EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000016741 (Gene tree)
Gene ID: 103358041
Gene Symbol: polr2a
Alias: im:7136071
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Minus strand
Length: 10985 bases
Position: chrKK580358.1:275019-286003
Accession: 103358041
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000022220	RNA_pol_Rpb1_5	PF04998.17	2.4e-101	1	1
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	1	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	2	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	3	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	4	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	5	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	6	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	7	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	8	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	9	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	10	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	11	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	12	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	13	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	14	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	15	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	16	17
ENSSPAP00000022220	RNA_pol_Rpb1_R	PF05001.13	9.9e-11	17	17
ENSSPAP00000022220	RNA_pol_Rpb1_4	PF05000.17	1.2e-37	1	1
ENSSPAP00000022220	RNA_pol_Rpb1_2	PF00623.20	5.7e-75	1	1
ENSSPAP00000022220	RNA_pol_Rpb1_3	PF04983.18	2.8e-50	1	1
ENSSPAP00000022220	RNA_pol_Rpb1_1	PF04997.12	1.3e-108	1	1
ENSSPAP00000022220	RNA_pol_Rpb1_7	PF04990.12	6e-55	1	1
ENSSPAP00000022220	RNA_pol_Rpb1_6	PF04992.14	4.1e-67	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000022572	-	5868	XM_008282846	ENSSPAP00000022220	1955 (aa)	XP_008281068	-

Gene Model

Click here to download ENSSPAG00000016741's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000016741's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000016741	polr2a	67	38.079	ENSSPAG00000017712	polr3a	91	38.079

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000016741	polr2a	94	99.642	ENSAPOG00000006552	polr2a	94	99.642	Acanthochromis_polyacanthus
ENSSPAG00000016741	polr2a	94	94.114	ENSAMEG00000016265	-	100	94.121	Ailuropoda_melanoleuca
ENSSPAG00000016741	polr2a	95	100.000	ENSACIG00000015982	polr2a	100	100.000	Amphilophus_citrinellus
ENSSPAG00000016741	polr2a	94	99.762	ENSAOCG00000004255	polr2a	100	97.437	Amphiprion_ocellaris
ENSSPAG00000016741	polr2a	95	100.000	ENSAPEG00000012623	polr2a	100	100.000	Amphiprion_percula
ENSSPAG00000016741	polr2a	95	100.000	ENSATEG00000019644	polr2a	100	100.000	Anabas_testudineus
ENSSPAG00000016741	polr2a	94	94.969	ENSACAG00000014561	POLR2A	100	94.975	Anolis_carolinensis
ENSSPAG00000016741	polr2a	94	94.475	ENSANAG00000020093	-	100	94.482	Aotus_nancymaae
ENSSPAG00000016741	polr2a	95	100.000	ENSACLG00000006735	polr2a	100	100.000	Astatotilapia_calliptera
ENSSPAG00000016741	polr2a	95	100.000	ENSAMXG00000020046	polr2a	100	100.000	Astyanax_mexicanus
ENSSPAG00000016741	polr2a	94	94.475	ENSBTAG00000046765	POLR2A	100	94.482	Bos_taurus
ENSSPAG00000016741	polr2a	94	70.123	WBGene00000123	ama-1	99	79.612	Caenorhabditis_elegans
ENSSPAG00000016741	polr2a	95	94.413	ENSCAFG00000016532	POLR2A	100	94.420	Canis_familiaris
ENSSPAG00000016741	polr2a	94	93.548	ENSCAFG00020007929	-	100	93.556	Canis_lupus_dingo
ENSSPAG00000016741	polr2a	94	94.475	ENSCHIG00000027173	-	100	94.482	Capra_hircus
ENSSPAG00000016741	polr2a	94	93.798	ENSTSYG00000012803	-	100	92.374	Carlito_syrichta
ENSSPAG00000016741	polr2a	92	94.394	ENSCAPG00000001882	-	100	93.429	Cavia_aperea
ENSSPAG00000016741	polr2a	94	94.249	ENSCPOG00000014812	-	100	93.304	Cavia_porcellus
ENSSPAG00000016741	polr2a	94	94.475	ENSCCAG00000020938	-	100	94.482	Cebus_capucinus
ENSSPAG00000016741	polr2a	94	94.475	ENSCATG00000013680	-	100	94.482	Cercocebus_atys
ENSSPAG00000016741	polr2a	94	94.351	ENSCLAG00000012196	-	100	94.358	Chinchilla_lanigera
ENSSPAG00000016741	polr2a	94	85.688	ENSCSAG00000011644	-	100	85.705	Chlorocebus_sabaeus
ENSSPAG00000016741	polr2a	94	91.118	ENSCPBG00000012697	POLR2A	100	91.005	Chrysemys_picta_bellii
ENSSPAG00000016741	polr2a	94	71.523	ENSCING00000007884	-	99	77.475	Ciona_intestinalis
ENSSPAG00000016741	polr2a	94	76.427	ENSCSAVG00000008334	-	99	81.731	Ciona_savignyi
ENSSPAG00000016741	polr2a	94	93.793	ENSCANG00000010622	-	100	93.800	Colobus_angolensis_palliatus
ENSSPAG00000016741	polr2a	94	88.076	ENSCGRG00001003538	Polr2a	100	88.210	Cricetulus_griseus_chok1gshd
ENSSPAG00000016741	polr2a	82	90.736	ENSCGRG00000012105	Polr2a	97	90.462	Cricetulus_griseus_crigri
ENSSPAG00000016741	polr2a	95	100.000	ENSCSEG00000002635	polr2a	100	100.000	Cynoglossus_semilaevis
ENSSPAG00000016741	polr2a	95	100.000	ENSCVAG00000005156	polr2a	100	100.000	Cyprinodon_variegatus
ENSSPAG00000016741	polr2a	95	100.000	ENSDARG00000099966	polr2a	100	100.000	Danio_rerio
ENSSPAG00000016741	polr2a	94	91.106	ENSDNOG00000016482	-	100	91.117	Dasypus_novemcinctus
ENSSPAG00000016741	polr2a	94	94.475	ENSDORG00000008667	Polr2a	100	94.482	Dipodomys_ordii
ENSSPAG00000016741	polr2a	94	71.234	FBgn0003277	RpII215	99	75.280	Drosophila_melanogaster
ENSSPAG00000016741	polr2a	89	90.163	ENSETEG00000002540	-	87	91.267	Echinops_telfairi
ENSSPAG00000016741	polr2a	92	87.461	ENSEBUG00000013967	polr2a	99	87.446	Eptatretus_burgeri
ENSSPAG00000016741	polr2a	94	92.427	ENSEASG00005019114	-	100	92.436	Equus_asinus_asinus
ENSSPAG00000016741	polr2a	94	94.475	ENSECAG00000018485	POLR2A	100	94.482	Equus_caballus
ENSSPAG00000016741	polr2a	79	94.393	ENSEEUG00000001154	-	95	94.393	Erinaceus_europaeus
ENSSPAG00000016741	polr2a	93	92.602	ENSELUG00000014284	polr2a	100	93.280	Esox_lucius
ENSSPAG00000016741	polr2a	94	94.538	ENSFDAG00000008287	-	100	94.544	Fukomys_damarensis
ENSSPAG00000016741	polr2a	94	98.451	ENSFHEG00000001768	polr2a	100	98.451	Fundulus_heteroclitus
ENSSPAG00000016741	polr2a	92	93.313	ENSGMOG00000007725	polr2a	100	93.313	Gadus_morhua
ENSSPAG00000016741	polr2a	95	98.570	ENSGAFG00000005389	polr2a	100	98.570	Gambusia_affinis
ENSSPAG00000016741	polr2a	92	94.800	ENSGACG00000019366	polr2a	100	94.583	Gasterosteus_aculeatus
ENSSPAG00000016741	polr2a	94	92.384	ENSGGOG00000014800	-	100	92.393	Gorilla_gorilla
ENSSPAG00000016741	polr2a	94	98.570	ENSHBUG00000018937	polr2a	100	98.570	Haplochromis_burtoni
ENSSPAG00000016741	polr2a	94	94.538	ENSHGLG00000012381	POLR2A	100	94.544	Heterocephalus_glaber_female
ENSSPAG00000016741	polr2a	94	94.538	ENSHGLG00100014843	POLR2A	100	94.544	Heterocephalus_glaber_male
ENSSPAG00000016741	polr2a	95	99.429	ENSHCOG00000011874	polr2a	100	99.429	Hippocampus_comes
ENSSPAG00000016741	polr2a	95	100.000	ENSIPUG00000002613	Polr2a	100	100.000	Ictalurus_punctatus
ENSSPAG00000016741	polr2a	94	94.475	ENSSTOG00000001304	-	100	94.482	Ictidomys_tridecemlineatus
ENSSPAG00000016741	polr2a	94	94.475	ENSJJAG00000013049	Polr2a	100	94.482	Jaculus_jaculus
ENSSPAG00000016741	polr2a	82	100.000	ENSKMAG00000016343	polr2a	86	100.000	Kryptolebias_marmoratus
ENSSPAG00000016741	polr2a	95	100.000	ENSLBEG00000027652	polr2a	100	100.000	Labrus_bergylta
ENSSPAG00000016741	polr2a	93	93.600	ENSLACG00000012071	POLR2A	100	94.958	Latimeria_chalumnae
ENSSPAG00000016741	polr2a	95	96.782	ENSLOCG00000013863	polr2a	100	96.782	Lepisosteus_oculatus
ENSSPAG00000016741	polr2a	95	94.475	ENSLAFG00000008626	-	100	94.482	Loxodonta_africana
ENSSPAG00000016741	polr2a	50	93.156	ENSMFAG00000007042	-	99	93.156	Macaca_fascicularis
ENSSPAG00000016741	polr2a	94	94.475	ENSMMUG00000023620	-	100	94.482	Macaca_mulatta
ENSSPAG00000016741	polr2a	94	94.041	ENSMNEG00000040407	-	100	94.048	Macaca_nemestrina
ENSSPAG00000016741	polr2a	92	90.063	ENSMLEG00000030263	-	99	93.156	Mandrillus_leucophaeus
ENSSPAG00000016741	polr2a	95	100.000	ENSMAMG00000003351	polr2a	100	100.000	Mastacembelus_armatus
ENSSPAG00000016741	polr2a	95	100.000	ENSMZEG00005021429	polr2a	100	100.000	Maylandia_zebra
ENSSPAG00000016741	polr2a	50	94.088	ENSMAUG00000021055	-	99	94.088	Mesocricetus_auratus
ENSSPAG00000016741	polr2a	94	94.413	ENSMICG00000013372	-	100	94.420	Microcebus_murinus
ENSSPAG00000016741	polr2a	94	90.154	ENSMOCG00000018279	Polr2a	100	90.173	Microtus_ochrogaster
ENSSPAG00000016741	polr2a	94	98.391	ENSMMOG00000012515	polr2a	96	98.391	Mola_mola
ENSSPAG00000016741	polr2a	94	94.289	ENSMODG00000007009	-	100	94.296	Monodelphis_domestica
ENSSPAG00000016741	polr2a	94	98.689	ENSMALG00000008716	polr2a	100	96.365	Monopterus_albus
ENSSPAG00000016741	polr2a	94	94.475	MGP_CAROLIEiJ_G0016587	Polr2a	100	94.482	Mus_caroli
ENSSPAG00000016741	polr2a	94	94.475	ENSMUSG00000005198	Polr2a	100	94.482	Mus_musculus
ENSSPAG00000016741	polr2a	94	92.336	MGP_PahariEiJ_G0017718	Polr2a	100	92.346	Mus_pahari
ENSSPAG00000016741	polr2a	94	94.475	MGP_SPRETEiJ_G0017423	Polr2a	100	94.482	Mus_spretus
ENSSPAG00000016741	polr2a	94	94.475	ENSMPUG00000009648	-	100	94.482	Mustela_putorius_furo
ENSSPAG00000016741	polr2a	94	93.862	ENSMLUG00000009088	-	100	93.870	Myotis_lucifugus
ENSSPAG00000016741	polr2a	94	94.475	ENSNGAG00000002543	Polr2a	100	94.482	Nannospalax_galili
ENSSPAG00000016741	polr2a	95	100.000	ENSNBRG00000002005	polr2a	100	100.000	Neolamprologus_brichardi
ENSSPAG00000016741	polr2a	94	93.003	ENSNLEG00000009460	-	100	93.012	Nomascus_leucogenys
ENSSPAG00000016741	polr2a	88	95.316	ENSMEUG00000008611	-	96	86.775	Notamacropus_eugenii
ENSSPAG00000016741	polr2a	81	94.188	ENSOPRG00000015116	-	99	94.188	Ochotona_princeps
ENSSPAG00000016741	polr2a	92	94.389	ENSODEG00000017674	-	100	89.835	Octodon_degus
ENSSPAG00000016741	polr2a	95	100.000	ENSONIG00000009231	polr2a	100	100.000	Oreochromis_niloticus
ENSSPAG00000016741	polr2a	94	93.256	ENSOCUG00000017929	-	100	94.358	Oryctolagus_cuniculus
ENSSPAG00000016741	polr2a	95	100.000	ENSORLG00000006431	polr2a	100	100.000	Oryzias_latipes
ENSSPAG00000016741	polr2a	95	100.000	ENSORLG00020010235	polr2a	100	100.000	Oryzias_latipes_hni
ENSSPAG00000016741	polr2a	95	100.000	ENSORLG00015007075	polr2a	100	100.000	Oryzias_latipes_hsok
ENSSPAG00000016741	polr2a	92	98.320	ENSOMEG00000010713	polr2a	100	98.320	Oryzias_melastigma
ENSSPAG00000016741	polr2a	94	94.475	ENSOGAG00000033608	-	100	94.482	Otolemur_garnettii
ENSSPAG00000016741	polr2a	93	94.475	ENSOARG00000013874	-	100	94.482	Ovis_aries
ENSSPAG00000016741	polr2a	94	91.880	ENSPPAG00000043734	-	100	91.878	Pan_paniscus
ENSSPAG00000016741	polr2a	94	93.003	ENSPTRG00000008691	POLR2A	100	93.012	Pan_troglodytes
ENSSPAG00000016741	polr2a	94	93.793	ENSPANG00000024099	-	100	93.800	Papio_anubis
ENSSPAG00000016741	polr2a	82	96.026	ENSPKIG00000005727	polr2a	85	96.026	Paramormyrops_kingsleyae
ENSSPAG00000016741	polr2a	92	92.953	ENSPSIG00000014006	POLR2A	100	92.875	Pelodiscus_sinensis
ENSSPAG00000016741	polr2a	93	97.932	ENSPMGG00000019734	polr2a	100	97.932	Periophthalmus_magnuspinnatus
ENSSPAG00000016741	polr2a	94	94.475	ENSPEMG00000012521	Polr2a	100	94.482	Peromyscus_maniculatus_bairdii
ENSSPAG00000016741	polr2a	86	94.293	ENSPCIG00000028851	-	82	94.293	Phascolarctos_cinereus
ENSSPAG00000016741	polr2a	95	98.629	ENSPFOG00000007890	polr2a	100	98.629	Poecilia_formosa
ENSSPAG00000016741	polr2a	95	98.629	ENSPLAG00000007399	polr2a	100	98.629	Poecilia_latipinna
ENSSPAG00000016741	polr2a	95	98.629	ENSPMEG00000002071	polr2a	100	98.629	Poecilia_mexicana
ENSSPAG00000016741	polr2a	95	100.000	ENSPREG00000013122	polr2a	100	100.000	Poecilia_reticulata
ENSSPAG00000016741	polr2a	94	94.475	ENSPPYG00000007924	-	100	94.482	Pongo_abelii
ENSSPAG00000016741	polr2a	86	95.132	ENSPCAG00000006951	-	92	95.132	Procavia_capensis
ENSSPAG00000016741	polr2a	94	93.173	ENSPCOG00000025260	-	100	93.182	Propithecus_coquereli
ENSSPAG00000016741	polr2a	94	94.165	ENSPVAG00000005069	-	100	94.172	Pteropus_vampyrus
ENSSPAG00000016741	polr2a	95	100.000	ENSPNYG00000022340	polr2a	100	100.000	Pundamilia_nyererei
ENSSPAG00000016741	polr2a	95	100.000	ENSPNAG00000011237	polr2a	100	100.000	Pygocentrus_nattereri
ENSSPAG00000016741	polr2a	94	94.413	ENSRNOG00000028834	Polr2a	100	94.420	Rattus_norvegicus
ENSSPAG00000016741	polr2a	94	92.346	ENSRBIG00000002471	-	100	92.374	Rhinopithecus_bieti
ENSSPAG00000016741	polr2a	94	94.475	ENSRROG00000029583	-	100	94.482	Rhinopithecus_roxellana
ENSSPAG00000016741	polr2a	83	50.092	YDL140C	RPO21	99	80.769	Saccharomyces_cerevisiae
ENSSPAG00000016741	polr2a	94	94.475	ENSSBOG00000000808	-	100	94.482	Saimiri_boliviensis_boliviensis
ENSSPAG00000016741	polr2a	94	94.289	ENSSHAG00000002858	-	100	94.296	Sarcophilus_harrisii
ENSSPAG00000016741	polr2a	95	97.378	ENSSFOG00015023275	polr2a	100	97.378	Scleropages_formosus
ENSSPAG00000016741	polr2a	95	100.000	ENSSMAG00000009137	polr2a	100	100.000	Scophthalmus_maximus
ENSSPAG00000016741	polr2a	95	100.000	ENSSDUG00000020466	polr2a	100	100.000	Seriola_dumerili
ENSSPAG00000016741	polr2a	95	100.000	ENSSLDG00000020613	polr2a	100	100.000	Seriola_lalandi_dorsalis
ENSSPAG00000016741	polr2a	85	90.072	ENSSARG00000005875	-	99	90.892	Sorex_araneus
ENSSPAG00000016741	polr2a	94	93.544	ENSSSCG00000028278	-	100	93.552	Sus_scrofa
ENSSPAG00000016741	polr2a	92	88.010	ENSTRUG00000012320	polr2a	81	91.734	Takifugu_rubripes
ENSSPAG00000016741	polr2a	89	96.971	ENSTNIG00000010136	polr2a	100	96.971	Tetraodon_nigroviridis
ENSSPAG00000016741	polr2a	69	94.898	ENSTBEG00000013294	-	58	94.898	Tupaia_belangeri
ENSSPAG00000016741	polr2a	94	92.800	ENSTTRG00000014273	-	100	92.808	Tursiops_truncatus
ENSSPAG00000016741	polr2a	90	94.056	ENSUAMG00000014866	-	100	94.063	Ursus_americanus
ENSSPAG00000016741	polr2a	86	91.757	ENSUMAG00000015732	-	99	91.770	Ursus_maritimus
ENSSPAG00000016741	polr2a	56	98.370	ENSVPAG00000008842	-	75	98.370	Vicugna_pacos
ENSSPAG00000016741	polr2a	94	94.413	ENSVVUG00000027878	-	100	94.420	Vulpes_vulpes
ENSSPAG00000016741	polr2a	93	96.273	ENSXETG00000012465	polr2a	100	96.273	Xenopus_tropicalis
ENSSPAG00000016741	polr2a	95	95.769	ENSXCOG00000001804	polr2a	100	96.365	Xiphophorus_couchianus
ENSSPAG00000016741	polr2a	95	100.000	ENSXMAG00000015687	polr2a	100	100.000	Xiphophorus_maculatus