EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000017137 (Gene tree)
Gene ID: 103373754
Gene Symbol: pabpc1l
Alias: fi20g03|wu:fi20g03|zgc:55855
Full Name: embryonic polyadenylate-binding protein-like
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Plus strand
Length: 9204 bases
Position: chrKK582128.1:24309-33512
Accession: 103373754
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000022707	PABP	PF00658.18	4.5e-28	1	1
ENSSPAP00000022707	RRM_5	PF13893.6	1.2e-09	1	3
ENSSPAP00000022707	RRM_5	PF13893.6	1.2e-09	2	3
ENSSPAP00000022707	RRM_5	PF13893.6	1.2e-09	3	3
ENSSPAP00000022707	RRM_1	PF00076.22	6.3e-88	1	4
ENSSPAP00000022707	RRM_1	PF00076.22	6.3e-88	2	4
ENSSPAP00000022707	RRM_1	PF00076.22	6.3e-88	3	4
ENSSPAP00000022707	RRM_1	PF00076.22	6.3e-88	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000023072	-	1674	XM_008303725	ENSSPAP00000022707	557 (aa)	XP_008301947	-

Gene Model

Click here to download ENSSPAG00000017137's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000017137's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000017137	pabpc1l	52	32.558	ENSSPAG00000009569	celf1	65	32.558
ENSSPAG00000017137	pabpc1l	55	35.616	ENSSPAG00000003615	celf3a	70	35.616
ENSSPAG00000017137	pabpc1l	66	34.444	ENSSPAG00000011250	-	97	34.444
ENSSPAG00000017137	pabpc1l	55	35.616	ENSSPAG00000019028	celf3b	58	35.616
ENSSPAG00000017137	pabpc1l	99	71.605	ENSSPAG00000019265	pabpc1b	98	71.605
ENSSPAG00000017137	pabpc1l	96	75.000	ENSSPAG00000014453	-	85	75.000
ENSSPAG00000017137	pabpc1l	100	68.806	ENSSPAG00000009252	pabpc4	98	68.806
ENSSPAG00000017137	pabpc1l	63	30.857	ENSSPAG00000002637	ncl	73	30.387

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000017137	pabpc1l	99	64.250	ENSG00000101104	PABPC1L	98	76.235	Homo_sapiens
ENSSPAG00000017137	pabpc1l	99	82.730	ENSAPOG00000010842	pabpc1l	99	83.031	Acanthochromis_polyacanthus
ENSSPAG00000017137	pabpc1l	90	75.000	ENSAMEG00000004099	PABPC1L	82	79.012	Ailuropoda_melanoleuca
ENSSPAG00000017137	pabpc1l	98	83.835	ENSACIG00000021004	-	100	83.835	Amphilophus_citrinellus
ENSSPAG00000017137	pabpc1l	98	91.000	ENSAOCG00000006167	-	87	94.144	Amphiprion_ocellaris
ENSSPAG00000017137	pabpc1l	100	89.474	ENSAPEG00000010558	-	99	92.202	Amphiprion_percula
ENSSPAG00000017137	pabpc1l	100	77.162	ENSATEG00000007428	pabpc1l	100	80.229	Anabas_testudineus
ENSSPAG00000017137	pabpc1l	98	64.065	ENSAPLG00000008415	PABPC1L	99	64.090	Anas_platyrhynchos
ENSSPAG00000017137	pabpc1l	99	63.593	ENSACAG00000011841	PABPC1L	99	63.593	Anolis_carolinensis
ENSSPAG00000017137	pabpc1l	99	65.620	ENSANAG00000026826	PABPC1L	99	65.620	Aotus_nancymaae
ENSSPAG00000017137	pabpc1l	100	76.198	ENSACLG00000024791	pabpc1l	100	76.198	Astatotilapia_calliptera
ENSSPAG00000017137	pabpc1l	98	81.166	ENSAMXG00000013552	pabpc1l	88	81.166	Astyanax_mexicanus
ENSSPAG00000017137	pabpc1l	65	86.905	ENSBTAG00000055300	-	100	86.905	Bos_taurus
ENSSPAG00000017137	pabpc1l	76	58.923	ENSBTAG00000016849	PABPC1L	90	58.923	Bos_taurus
ENSSPAG00000017137	pabpc1l	66	78.736	ENSCJAG00000038506	-	100	78.736	Callithrix_jacchus
ENSSPAG00000017137	pabpc1l	99	65.620	ENSCJAG00000017628	PABPC1L	99	65.620	Callithrix_jacchus
ENSSPAG00000017137	pabpc1l	95	74.468	ENSCAFG00000009573	PABPC1L	83	74.468	Canis_familiaris
ENSSPAG00000017137	pabpc1l	99	66.392	ENSCAFG00020013828	PABPC1L	99	66.392	Canis_lupus_dingo
ENSSPAG00000017137	pabpc1l	97	66.610	ENSCHIG00000025759	PABPC1L	91	66.610	Capra_hircus
ENSSPAG00000017137	pabpc1l	99	63.756	ENSTSYG00000006645	PABPC1L	98	63.756	Carlito_syrichta
ENSSPAG00000017137	pabpc1l	97	59.623	ENSCAPG00000014519	PABPC1L	98	59.623	Cavia_aperea
ENSSPAG00000017137	pabpc1l	99	62.357	ENSCPOG00000013633	PABPC1L	99	62.357	Cavia_porcellus
ENSSPAG00000017137	pabpc1l	99	64.415	ENSCCAG00000023338	PABPC1L	99	65.239	Cebus_capucinus
ENSSPAG00000017137	pabpc1l	99	64.745	ENSCATG00000034065	PABPC1L	99	65.898	Cercocebus_atys
ENSSPAG00000017137	pabpc1l	99	61.741	ENSCLAG00000005298	PABPC1L	99	62.726	Chinchilla_lanigera
ENSSPAG00000017137	pabpc1l	99	64.745	ENSCSAG00000014242	PABPC1L	99	65.733	Chlorocebus_sabaeus
ENSSPAG00000017137	pabpc1l	79	76.629	ENSCPBG00000017755	-	100	76.629	Chrysemys_picta_bellii
ENSSPAG00000017137	pabpc1l	59	82.443	ENSCPBG00000007810	-	81	82.443	Chrysemys_picta_bellii
ENSSPAG00000017137	pabpc1l	78	69.565	ENSCING00000002796	-	76	69.565	Ciona_intestinalis
ENSSPAG00000017137	pabpc1l	95	71.591	ENSCSAVG00000003102	-	100	83.221	Ciona_savignyi
ENSSPAG00000017137	pabpc1l	99	77.108	ENSCSAVG00000004246	-	91	77.108	Ciona_savignyi
ENSSPAG00000017137	pabpc1l	99	64.356	ENSCANG00000037530	PABPC1L	99	64.191	Colobus_angolensis_palliatus
ENSSPAG00000017137	pabpc1l	99	60.000	ENSCGRG00001021938	Pabpc1l	98	60.000	Cricetulus_griseus_chok1gshd
ENSSPAG00000017137	pabpc1l	99	60.000	ENSCGRG00000007946	Pabpc1l	98	60.000	Cricetulus_griseus_crigri
ENSSPAG00000017137	pabpc1l	99	79.823	ENSCSEG00000021295	pabpc1l	99	79.823	Cynoglossus_semilaevis
ENSSPAG00000017137	pabpc1l	100	82.437	ENSCVAG00000015943	-	99	96.183	Cyprinodon_variegatus
ENSSPAG00000017137	pabpc1l	97	80.435	ENSDARG00000002597	pabpc1l	88	93.077	Danio_rerio
ENSSPAG00000017137	pabpc1l	99	65.954	ENSDNOG00000048450	PABPC1L	99	65.950	Dasypus_novemcinctus
ENSSPAG00000017137	pabpc1l	99	63.907	ENSDORG00000001067	Pabpc1l	99	63.907	Dipodomys_ordii
ENSSPAG00000017137	pabpc1l	94	76.829	ENSETEG00000009969	PABPC1L	72	76.829	Echinops_telfairi
ENSSPAG00000017137	pabpc1l	56	70.701	ENSEASG00005023407	-	63	70.701	Equus_asinus_asinus
ENSSPAG00000017137	pabpc1l	64	84.524	ENSEASG00005023408	-	100	84.524	Equus_asinus_asinus
ENSSPAG00000017137	pabpc1l	75	65.401	ENSECAG00000040139	-	85	65.401	Equus_caballus
ENSSPAG00000017137	pabpc1l	99	62.957	ENSEEUG00000005978	PABPC1L	99	62.957	Erinaceus_europaeus
ENSSPAG00000017137	pabpc1l	100	81.614	ENSELUG00000001811	pabpc1l	100	81.614	Esox_lucius
ENSSPAG00000017137	pabpc1l	99	65.733	ENSFCAG00000011692	PABPC1L	99	65.733	Felis_catus
ENSSPAG00000017137	pabpc1l	79	76.244	ENSFALG00000005372	PABPC1L	74	76.244	Ficedula_albicollis
ENSSPAG00000017137	pabpc1l	99	65.128	ENSFDAG00000008291	PABPC1L	98	65.128	Fukomys_damarensis
ENSSPAG00000017137	pabpc1l	100	78.699	ENSFHEG00000003398	pabpc1l	100	78.699	Fundulus_heteroclitus
ENSSPAG00000017137	pabpc1l	94	83.090	ENSGMOG00000004437	pabpc1l	98	73.039	Gadus_morhua
ENSSPAG00000017137	pabpc1l	95	70.787	ENSGALG00000004123	PABPC1L	99	77.143	Gallus_gallus
ENSSPAG00000017137	pabpc1l	100	73.118	ENSGAFG00000021057	pabpc1l	100	71.582	Gambusia_affinis
ENSSPAG00000017137	pabpc1l	99	72.947	ENSGACG00000002792	pabpc1l	100	72.947	Gasterosteus_aculeatus
ENSSPAG00000017137	pabpc1l	99	71.836	ENSGAGG00000000589	PABPC1L	98	71.836	Gopherus_agassizii
ENSSPAG00000017137	pabpc1l	99	64.250	ENSGGOG00000004584	PABPC1L	99	65.404	Gorilla_gorilla
ENSSPAG00000017137	pabpc1l	100	82.124	ENSHBUG00000006134	pabpc1l	100	82.124	Haplochromis_burtoni
ENSSPAG00000017137	pabpc1l	99	63.742	ENSHGLG00000008434	PABPC1L	99	63.576	Heterocephalus_glaber_female
ENSSPAG00000017137	pabpc1l	67	85.393	ENSHGLG00100019506	-	100	85.393	Heterocephalus_glaber_male
ENSSPAG00000017137	pabpc1l	99	63.742	ENSHGLG00100012151	PABPC1L	99	63.576	Heterocephalus_glaber_male
ENSSPAG00000017137	pabpc1l	100	80.105	ENSHCOG00000009270	pabpc1l	100	80.105	Hippocampus_comes
ENSSPAG00000017137	pabpc1l	100	74.742	ENSIPUG00000012602	pabpc1l	100	74.742	Ictalurus_punctatus
ENSSPAG00000017137	pabpc1l	66	62.069	ENSIPUG00000006780	-	85	62.069	Ictalurus_punctatus
ENSSPAG00000017137	pabpc1l	66	62.069	ENSIPUG00000006760	-	88	62.069	Ictalurus_punctatus
ENSSPAG00000017137	pabpc1l	99	65.620	ENSSTOG00000003739	PABPC1L	99	65.620	Ictidomys_tridecemlineatus
ENSSPAG00000017137	pabpc1l	99	49.543	ENSJJAG00000022406	Pabpc1l	99	47.961	Jaculus_jaculus
ENSSPAG00000017137	pabpc1l	99	76.998	ENSKMAG00000016847	pabpc1l	100	76.998	Kryptolebias_marmoratus
ENSSPAG00000017137	pabpc1l	100	77.500	ENSLBEG00000010084	pabpc1l	100	73.258	Labrus_bergylta
ENSSPAG00000017137	pabpc1l	96	77.027	ENSLACG00000005762	PABPC1L	85	77.027	Latimeria_chalumnae
ENSSPAG00000017137	pabpc1l	97	81.195	ENSLOCG00000007519	pabpc1l	86	81.195	Lepisosteus_oculatus
ENSSPAG00000017137	pabpc1l	99	77.922	ENSLAFG00000003553	PABPC1L	87	77.922	Loxodonta_africana
ENSSPAG00000017137	pabpc1l	99	64.959	ENSMFAG00000040365	PABPC1L	99	65.950	Macaca_fascicularis
ENSSPAG00000017137	pabpc1l	99	64.086	ENSMNEG00000032298	PABPC1L	99	65.239	Macaca_nemestrina
ENSSPAG00000017137	pabpc1l	99	64.745	ENSMLEG00000043139	PABPC1L	99	65.898	Mandrillus_leucophaeus
ENSSPAG00000017137	pabpc1l	97	78.727	ENSMAMG00000011854	pabpc1l	97	78.727	Mastacembelus_armatus
ENSSPAG00000017137	pabpc1l	100	76.198	ENSMZEG00005023713	pabpc1l	100	76.198	Maylandia_zebra
ENSSPAG00000017137	pabpc1l	99	65.806	ENSMGAG00000003674	PABPC1L	99	66.074	Meleagris_gallopavo
ENSSPAG00000017137	pabpc1l	99	59.934	ENSMOCG00000013186	Pabpc1l	98	59.934	Microtus_ochrogaster
ENSSPAG00000017137	pabpc1l	99	82.867	ENSMMOG00000020574	-	90	95.385	Mola_mola
ENSSPAG00000017137	pabpc1l	94	66.783	ENSMODG00000016198	PABPC1L	99	66.893	Monodelphis_domestica
ENSSPAG00000017137	pabpc1l	97	75.828	ENSMALG00000021622	pabpc1l	100	75.828	Monopterus_albus
ENSSPAG00000017137	pabpc1l	99	59.217	MGP_CAROLIEiJ_G0024627	Pabpc1l	99	59.217	Mus_caroli
ENSSPAG00000017137	pabpc1l	99	59.217	ENSMUSG00000054582	Pabpc1l	99	59.217	Mus_musculus
ENSSPAG00000017137	pabpc1l	100	59.675	MGP_PahariEiJ_G0026071	Pabpc1l	100	59.675	Mus_pahari
ENSSPAG00000017137	pabpc1l	99	59.217	MGP_SPRETEiJ_G0025549	Pabpc1l	99	59.217	Mus_spretus
ENSSPAG00000017137	pabpc1l	99	63.813	ENSMPUG00000017646	PABPC1L	99	63.813	Mustela_putorius_furo
ENSSPAG00000017137	pabpc1l	94	72.093	ENSMLUG00000006324	PABPC1L	84	72.093	Myotis_lucifugus
ENSSPAG00000017137	pabpc1l	99	61.056	ENSNGAG00000010458	Pabpc1l	99	61.056	Nannospalax_galili
ENSSPAG00000017137	pabpc1l	98	83.835	ENSNBRG00000016633	pabpc1l	100	83.835	Neolamprologus_brichardi
ENSSPAG00000017137	pabpc1l	89	63.187	ENSMEUG00000007905	-	89	63.187	Notamacropus_eugenii
ENSSPAG00000017137	pabpc1l	99	64.686	ENSOPRG00000011846	PABPC1L	99	64.686	Ochotona_princeps
ENSSPAG00000017137	pabpc1l	99	63.251	ENSODEG00000015482	PABPC1L	98	63.251	Octodon_degus
ENSSPAG00000017137	pabpc1l	64	79.375	ENSODEG00000002920	-	97	79.375	Octodon_degus
ENSSPAG00000017137	pabpc1l	100	76.038	ENSONIG00000017314	pabpc1l	100	76.038	Oreochromis_niloticus
ENSSPAG00000017137	pabpc1l	89	58.047	ENSOANG00000015793	-	100	58.047	Ornithorhynchus_anatinus
ENSSPAG00000017137	pabpc1l	96	72.826	ENSOCUG00000003005	PABPC1L	83	72.826	Oryctolagus_cuniculus
ENSSPAG00000017137	pabpc1l	100	81.109	ENSORLG00000010322	pabpc1l	100	81.109	Oryzias_latipes
ENSSPAG00000017137	pabpc1l	98	80.639	ENSORLG00020021193	pabpc1l	100	80.639	Oryzias_latipes_hni
ENSSPAG00000017137	pabpc1l	98	80.451	ENSORLG00015017018	pabpc1l	100	80.451	Oryzias_latipes_hsok
ENSSPAG00000017137	pabpc1l	100	70.076	ENSOMEG00000010789	pabpc1l	100	70.076	Oryzias_melastigma
ENSSPAG00000017137	pabpc1l	99	62.921	ENSOGAG00000032999	PABPC1L	99	62.921	Otolemur_garnettii
ENSSPAG00000017137	pabpc1l	99	65.954	ENSOARG00000004578	PABPC1L	99	65.954	Ovis_aries
ENSSPAG00000017137	pabpc1l	99	63.921	ENSPPAG00000039677	PABPC1L	99	65.239	Pan_paniscus
ENSSPAG00000017137	pabpc1l	69	67.284	ENSPPRG00000019327	-	98	67.284	Panthera_pardus
ENSSPAG00000017137	pabpc1l	98	65.667	ENSPTIG00000006524	PABPC1L	99	65.667	Panthera_tigris_altaica
ENSSPAG00000017137	pabpc1l	69	75.926	ENSPTRG00000013531	PABPC1L	98	75.926	Pan_troglodytes
ENSSPAG00000017137	pabpc1l	99	64.745	ENSPANG00000018788	PABPC1L	99	65.898	Papio_anubis
ENSSPAG00000017137	pabpc1l	97	83.158	ENSPKIG00000007322	pabpc1l	87	83.158	Paramormyrops_kingsleyae
ENSSPAG00000017137	pabpc1l	59	82.443	ENSPKIG00000016810	-	93	82.443	Paramormyrops_kingsleyae
ENSSPAG00000017137	pabpc1l	75	77.938	ENSPSIG00000013289	PABPC1L	99	77.938	Pelodiscus_sinensis
ENSSPAG00000017137	pabpc1l	67	92.093	ENSPMGG00000023117	pabpc1l	97	92.093	Periophthalmus_magnuspinnatus
ENSSPAG00000017137	pabpc1l	78	80.000	ENSPMGG00000023121	-	91	80.000	Periophthalmus_magnuspinnatus
ENSSPAG00000017137	pabpc1l	99	59.432	ENSPEMG00000020671	Pabpc1l	98	59.098	Peromyscus_maniculatus_bairdii
ENSSPAG00000017137	pabpc1l	100	79.276	ENSPFOG00000013241	pabpc1l	99	78.947	Poecilia_formosa
ENSSPAG00000017137	pabpc1l	58	96.154	ENSPLAG00000023686	-	92	96.154	Poecilia_latipinna
ENSSPAG00000017137	pabpc1l	100	85.205	ENSPLAG00000017490	-	100	85.205	Poecilia_latipinna
ENSSPAG00000017137	pabpc1l	100	77.634	ENSPMEG00000007677	pabpc1l	100	77.147	Poecilia_mexicana
ENSSPAG00000017137	pabpc1l	58	96.154	ENSPMEG00000009185	-	88	96.154	Poecilia_mexicana
ENSSPAG00000017137	pabpc1l	74	89.294	ENSPREG00000015886	pabpc1l	99	89.294	Poecilia_reticulata
ENSSPAG00000017137	pabpc1l	99	64.250	ENSPPYG00000011042	PABPC1L	99	65.568	Pongo_abelii
ENSSPAG00000017137	pabpc1l	68	85.938	ENSPCAG00000011787	-	75	85.938	Procavia_capensis
ENSSPAG00000017137	pabpc1l	99	64.463	ENSPCOG00000020630	PABPC1L	99	64.793	Propithecus_coquereli
ENSSPAG00000017137	pabpc1l	99	64.145	ENSPVAG00000012663	PABPC1L	99	64.145	Pteropus_vampyrus
ENSSPAG00000017137	pabpc1l	98	84.023	ENSPNYG00000004101	pabpc1l	100	84.023	Pundamilia_nyererei
ENSSPAG00000017137	pabpc1l	100	78.000	ENSPNAG00000021248	pabpc1l	93	78.000	Pygocentrus_nattereri
ENSSPAG00000017137	pabpc1l	99	59.603	ENSRNOG00000012750	Pabpc1l	99	59.344	Rattus_norvegicus
ENSSPAG00000017137	pabpc1l	99	64.580	ENSRBIG00000035381	PABPC1L	99	65.733	Rhinopithecus_bieti
ENSSPAG00000017137	pabpc1l	99	64.415	ENSRROG00000044498	PABPC1L	99	65.568	Rhinopithecus_roxellana
ENSSPAG00000017137	pabpc1l	99	65.455	ENSSBOG00000009532	-	99	65.455	Saimiri_boliviensis_boliviensis
ENSSPAG00000017137	pabpc1l	97	56.522	ENSSHAG00000011446	PABPC1L	99	56.522	Sarcophilus_harrisii
ENSSPAG00000017137	pabpc1l	97	81.166	ENSSFOG00015017304	pabpc1l	87	81.166	Scleropages_formosus
ENSSPAG00000017137	pabpc1l	99	86.545	ENSSMAG00000010516	pabpc1l	98	96.124	Scophthalmus_maximus
ENSSPAG00000017137	pabpc1l	100	77.832	ENSSDUG00000014743	pabpc1l	100	77.832	Seriola_dumerili
ENSSPAG00000017137	pabpc1l	98	83.523	ENSSLDG00000006981	pabpc1l	98	89.041	Seriola_lalandi_dorsalis
ENSSPAG00000017137	pabpc1l	99	64.139	ENSSPUG00000004233	PABPC1L	99	64.139	Sphenodon_punctatus
ENSSPAG00000017137	pabpc1l	99	66.667	ENSSSCG00000007382	PABPC1L	99	66.667	Sus_scrofa
ENSSPAG00000017137	pabpc1l	99	63.665	ENSTGUG00000005114	PABPC1L	100	63.665	Taeniopygia_guttata
ENSSPAG00000017137	pabpc1l	97	74.585	ENSTRUG00000011085	pabpc1l	97	74.585	Takifugu_rubripes
ENSSPAG00000017137	pabpc1l	99	73.377	ENSTNIG00000017903	pabpc1l	98	73.377	Tetraodon_nigroviridis
ENSSPAG00000017137	pabpc1l	93	76.027	ENSTBEG00000002851	PABPC1L	78	76.027	Tupaia_belangeri
ENSSPAG00000017137	pabpc1l	94	63.826	ENSTTRG00000007618	PABPC1L	100	63.959	Tursiops_truncatus
ENSSPAG00000017137	pabpc1l	99	68.439	ENSUAMG00000017682	PABPC1L	99	68.439	Ursus_americanus
ENSSPAG00000017137	pabpc1l	73	72.145	ENSUMAG00000025436	PABPC1L	92	72.145	Ursus_maritimus
ENSSPAG00000017137	pabpc1l	97	80.000	ENSVVUG00000018939	PABPC1L	96	80.000	Vulpes_vulpes
ENSSPAG00000017137	pabpc1l	99	64.263	ENSXETG00000022831	pabpc1l	99	64.263	Xenopus_tropicalis
ENSSPAG00000017137	pabpc1l	98	82.987	ENSXCOG00000005459	pabpc1l	99	91.489	Xiphophorus_couchianus
ENSSPAG00000017137	pabpc1l	100	85.205	ENSXMAG00000017135	pabpc1l	100	85.205	Xiphophorus_maculatus