EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPAG00000019105 (Gene tree)
Gene ID: 103358707
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Plus strand
Length: 12418 bases
Position: chrKK580398.1:238333-250750
Accession: 103358707
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000025270	MMR_HSR1	PF01926.23	1.6e-08	1	1
ENSSPAP00000025280	MMR_HSR1	PF01926.23	1.6e-08	1	1
ENSSPAP00000025290	MMR_HSR1	PF01926.23	1.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000025686	-	2015	XM_008283779	ENSSPAP00000025270	484 (aa)	XP_008282001	UPI0004969AFE
ENSSPAT00000025695	-	1979	XM_008283780	ENSSPAP00000025280	472 (aa)	XP_008282002	UPI000497B299
ENSSPAT00000025707	-	1527	-	ENSSPAP00000025290	508 (aa)	-	-

Gene Model

Click here to download ENSSPAG00000019105's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000019105's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPAG00000019105	srl	82	32.216	ENSSPAG00000008682	ehd1a	70	32.216
ENSSPAG00000019105	srl	93	78.458	ENSSPAG00000014254	SRL	98	78.458
ENSSPAG00000019105	srl	79	33.780	ENSSPAG00000013275	ehd3	69	34.026
ENSSPAG00000019105	srl	53	38.645	ENSSPAG00000006737	-	77	31.944
ENSSPAG00000019105	srl	63	36.013	ENSSPAG00000005490	ehd4	57	36.789
ENSSPAG00000019105	srl	87	32.629	ENSSPAG00000018164	ehd2b	74	33.092

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000019105	srl	96	82.301	ENSG00000185739	SRL	99	83.953	Homo_sapiens
ENSSPAG00000019105	srl	100	98.729	ENSAPOG00000018093	srl	100	98.729	Acanthochromis_polyacanthus
ENSSPAG00000019105	srl	94	77.376	ENSAPOG00000012432	SRL	99	77.201	Acanthochromis_polyacanthus
ENSSPAG00000019105	srl	98	81.250	ENSAMEG00000010862	SRL	50	83.484	Ailuropoda_melanoleuca
ENSSPAG00000019105	srl	95	75.000	ENSACIG00000015419	SRL	99	75.000	Amphilophus_citrinellus
ENSSPAG00000019105	srl	96	97.561	ENSACIG00000015799	srl	100	97.561	Amphilophus_citrinellus
ENSSPAG00000019105	srl	97	75.541	ENSAOCG00000017049	SRL	100	75.758	Amphiprion_ocellaris
ENSSPAG00000019105	srl	92	99.539	ENSAOCG00000007574	srl	100	99.539	Amphiprion_ocellaris
ENSSPAG00000019105	srl	100	98.967	ENSAPEG00000006911	srl	100	98.967	Amphiprion_percula
ENSSPAG00000019105	srl	98	70.613	ENSAPEG00000006533	SRL	100	72.727	Amphiprion_percula
ENSSPAG00000019105	srl	100	97.727	ENSATEG00000024315	srl	100	97.727	Anabas_testudineus
ENSSPAG00000019105	srl	94	76.096	ENSATEG00000009643	SRL	52	76.316	Anabas_testudineus
ENSSPAG00000019105	srl	94	84.989	ENSACAG00000016380	SRL	89	81.557	Anolis_carolinensis
ENSSPAG00000019105	srl	100	97.314	ENSACLG00000027685	srl	100	97.314	Astatotilapia_calliptera
ENSSPAG00000019105	srl	95	73.866	ENSACLG00000024674	SRL	58	73.866	Astatotilapia_calliptera
ENSSPAG00000019105	srl	99	91.925	ENSAMXG00000018789	srl	92	91.925	Astyanax_mexicanus
ENSSPAG00000019105	srl	93	75.171	ENSAMXG00000038693	SRL	100	74.614	Astyanax_mexicanus
ENSSPAG00000019105	srl	96	83.223	ENSBTAG00000001078	SRL	56	84.580	Bos_taurus
ENSSPAG00000019105	srl	94	83.710	ENSCJAG00000019750	SRL	100	80.550	Callithrix_jacchus
ENSSPAG00000019105	srl	98	81.128	ENSCAFG00000019233	SRL	90	78.468	Canis_familiaris
ENSSPAG00000019105	srl	96	82.119	ENSCAFG00020025024	SRL	54	83.484	Canis_lupus_dingo
ENSSPAG00000019105	srl	97	82.609	ENSCHIG00000017927	SRL	55	84.580	Capra_hircus
ENSSPAG00000019105	srl	100	80.550	ENSTSYG00000007919	SRL	99	84.651	Carlito_syrichta
ENSSPAG00000019105	srl	96	82.561	ENSCPOG00000012643	SRL	100	80.932	Cavia_porcellus
ENSSPAG00000019105	srl	94	78.054	ENSCCAG00000032646	SRL	100	84.960	Cebus_capucinus
ENSSPAG00000019105	srl	96	82.301	ENSCATG00000032227	-	100	80.550	Cercocebus_atys
ENSSPAG00000019105	srl	96	82.781	ENSCLAG00000016242	SRL	100	81.144	Chinchilla_lanigera
ENSSPAG00000019105	srl	82	86.494	ENSCHOG00000001618	SRL	52	86.494	Choloepus_hoffmanni
ENSSPAG00000019105	srl	96	86.010	ENSCPBG00000026371	SRL	99	80.952	Chrysemys_picta_bellii
ENSSPAG00000019105	srl	88	60.671	ENSCING00000005231	-	93	60.671	Ciona_intestinalis
ENSSPAG00000019105	srl	96	82.301	ENSCANG00000035872	SRL	99	83.953	Colobus_angolensis_palliatus
ENSSPAG00000019105	srl	96	83.480	ENSCGRG00001016630	Srl	100	81.568	Cricetulus_griseus_chok1gshd
ENSSPAG00000019105	srl	96	83.480	ENSCGRG00000005458	Srl	100	81.568	Cricetulus_griseus_crigri
ENSSPAG00000019105	srl	100	95.551	ENSCSEG00000016151	srl	100	95.551	Cynoglossus_semilaevis
ENSSPAG00000019105	srl	99	72.708	ENSCSEG00000011866	SRL	94	72.921	Cynoglossus_semilaevis
ENSSPAG00000019105	srl	95	76.087	ENSCVAG00000022465	SRL	60	76.991	Cyprinodon_variegatus
ENSSPAG00000019105	srl	100	94.835	ENSCVAG00000003513	srl	100	94.835	Cyprinodon_variegatus
ENSSPAG00000019105	srl	80	78.125	ENSDARG00000112959	CABZ01072309.1	100	78.125	Danio_rerio
ENSSPAG00000019105	srl	100	91.529	ENSDARG00000104587	srl	100	91.529	Danio_rerio
ENSSPAG00000019105	srl	95	83.111	ENSDNOG00000011643	SRL	54	82.819	Dasypus_novemcinctus
ENSSPAG00000019105	srl	97	83.114	ENSDORG00000014807	Srl	100	81.568	Dipodomys_ordii
ENSSPAG00000019105	srl	79	66.043	ENSEBUG00000015937	srl	94	66.043	Eptatretus_burgeri
ENSSPAG00000019105	srl	93	84.127	ENSEASG00005000942	SRL	55	82.781	Equus_asinus_asinus
ENSSPAG00000019105	srl	99	81.144	ENSECAG00000024219	SRL	99	81.144	Equus_caballus
ENSSPAG00000019105	srl	100	87.526	ENSELUG00000015616	srl	100	87.526	Esox_lucius
ENSSPAG00000019105	srl	95	73.568	ENSELUG00000022266	SRL	50	73.276	Esox_lucius
ENSSPAG00000019105	srl	100	80.338	ENSFCAG00000022075	SRL	100	80.338	Felis_catus
ENSSPAG00000019105	srl	96	82.262	ENSFALG00000004328	SRL	63	83.636	Ficedula_albicollis
ENSSPAG00000019105	srl	96	83.444	ENSFDAG00000006199	SRL	100	81.992	Fukomys_damarensis
ENSSPAG00000019105	srl	100	94.628	ENSFHEG00000011239	srl	100	94.628	Fundulus_heteroclitus
ENSSPAG00000019105	srl	100	72.634	ENSFHEG00000011854	SRL	98	77.149	Fundulus_heteroclitus
ENSSPAG00000019105	srl	94	92.731	ENSGMOG00000014954	srl	100	92.731	Gadus_morhua
ENSSPAG00000019105	srl	99	80.892	ENSGALG00000038884	SRL	99	80.892	Gallus_gallus
ENSSPAG00000019105	srl	94	78.281	ENSGAFG00000016984	SRL	98	78.281	Gambusia_affinis
ENSSPAG00000019105	srl	100	94.835	ENSGAFG00000000010	srl	100	94.835	Gambusia_affinis
ENSSPAG00000019105	srl	94	97.577	ENSGACG00000011332	srl	99	97.577	Gasterosteus_aculeatus
ENSSPAG00000019105	srl	96	82.301	ENSGGOG00000011312	-	100	80.338	Gorilla_gorilla
ENSSPAG00000019105	srl	95	74.298	ENSHBUG00000015710	SRL	58	74.298	Haplochromis_burtoni
ENSSPAG00000019105	srl	100	97.314	ENSHBUG00000007581	srl	100	97.314	Haplochromis_burtoni
ENSSPAG00000019105	srl	96	83.223	ENSHGLG00000015271	SRL	100	81.568	Heterocephalus_glaber_female
ENSSPAG00000019105	srl	96	83.223	ENSHGLG00100019378	SRL	100	81.568	Heterocephalus_glaber_male
ENSSPAG00000019105	srl	100	95.772	ENSHCOG00000008687	srl	100	96.009	Hippocampus_comes
ENSSPAG00000019105	srl	94	74.725	ENSHCOG00000001012	SRL	50	74.725	Hippocampus_comes
ENSSPAG00000019105	srl	92	70.183	ENSIPUG00000011609	SRL	95	70.183	Ictalurus_punctatus
ENSSPAG00000019105	srl	100	91.529	ENSIPUG00000012513	srl	100	91.529	Ictalurus_punctatus
ENSSPAG00000019105	srl	96	83.040	ENSSTOG00000021151	-	100	81.144	Ictidomys_tridecemlineatus
ENSSPAG00000019105	srl	100	82.203	ENSJJAG00000016400	Srl	100	82.203	Jaculus_jaculus
ENSSPAG00000019105	srl	93	76.871	ENSKMAG00000019537	SRL	100	76.871	Kryptolebias_marmoratus
ENSSPAG00000019105	srl	98	94.726	ENSKMAG00000014115	srl	95	94.726	Kryptolebias_marmoratus
ENSSPAG00000019105	srl	97	73.970	ENSLBEG00000013811	SRL	99	74.187	Labrus_bergylta
ENSSPAG00000019105	srl	100	95.763	ENSLBEG00000026643	srl	100	95.763	Labrus_bergylta
ENSSPAG00000019105	srl	100	82.851	ENSLACG00000002825	SRL	100	84.071	Latimeria_chalumnae
ENSSPAG00000019105	srl	99	87.821	ENSLOCG00000002644	srl	99	87.821	Lepisosteus_oculatus
ENSSPAG00000019105	srl	94	83.484	ENSLAFG00000006329	SRL	50	83.484	Loxodonta_africana
ENSSPAG00000019105	srl	91	83.953	ENSMFAG00000037383	SRL	99	83.953	Macaca_fascicularis
ENSSPAG00000019105	srl	97	81.659	ENSMNEG00000019236	-	97	81.659	Macaca_nemestrina
ENSSPAG00000019105	srl	96	75.221	ENSMLEG00000032156	SRL	100	73.784	Mandrillus_leucophaeus
ENSSPAG00000019105	srl	99	95.085	ENSMAMG00000023322	srl	99	95.513	Mastacembelus_armatus
ENSSPAG00000019105	srl	93	75.551	ENSMAMG00000013756	SRL	53	75.551	Mastacembelus_armatus
ENSSPAG00000019105	srl	95	74.082	ENSMZEG00005004010	SRL	58	74.082	Maylandia_zebra
ENSSPAG00000019105	srl	100	97.314	ENSMZEG00005004548	srl	100	97.314	Maylandia_zebra
ENSSPAG00000019105	srl	96	82.159	ENSMGAG00000009342	SRL	97	83.029	Meleagris_gallopavo
ENSSPAG00000019105	srl	96	82.781	ENSMICG00000032307	SRL	100	81.184	Microcebus_murinus
ENSSPAG00000019105	srl	100	80.720	ENSMOCG00000008208	Srl	100	80.720	Microtus_ochrogaster
ENSSPAG00000019105	srl	95	96.667	ENSMMOG00000013970	srl	100	96.667	Mola_mola
ENSSPAG00000019105	srl	94	74.725	ENSMMOG00000021572	SRL	99	74.725	Mola_mola
ENSSPAG00000019105	srl	96	83.628	ENSMODG00000016380	-	50	84.807	Monodelphis_domestica
ENSSPAG00000019105	srl	89	77.088	ENSMALG00000000670	SRL	98	77.088	Monopterus_albus
ENSSPAG00000019105	srl	100	95.339	ENSMALG00000005039	srl	99	96.429	Monopterus_albus
ENSSPAG00000019105	srl	97	83.772	MGP_CAROLIEiJ_G0020400	Srl	100	82.627	Mus_caroli
ENSSPAG00000019105	srl	97	83.772	ENSMUSG00000022519	Srl	100	82.627	Mus_musculus
ENSSPAG00000019105	srl	97	83.772	MGP_SPRETEiJ_G0021294	Srl	100	82.627	Mus_spretus
ENSSPAG00000019105	srl	96	82.340	ENSMPUG00000015025	SRL	54	83.484	Mustela_putorius_furo
ENSSPAG00000019105	srl	96	83.223	ENSMLUG00000030733	SRL	56	84.389	Myotis_lucifugus
ENSSPAG00000019105	srl	97	83.553	ENSNGAG00000019741	Srl	100	82.203	Nannospalax_galili
ENSSPAG00000019105	srl	100	96.822	ENSNBRG00000023775	srl	100	96.822	Neolamprologus_brichardi
ENSSPAG00000019105	srl	95	74.082	ENSNBRG00000002422	SRL	56	76.157	Neolamprologus_brichardi
ENSSPAG00000019105	srl	96	76.211	ENSNLEG00000029051	SRL	100	74.630	Nomascus_leucogenys
ENSSPAG00000019105	srl	96	76.652	ENSOPRG00000000477	-	52	77.828	Ochotona_princeps
ENSSPAG00000019105	srl	97	82.895	ENSODEG00000013256	SRL	100	81.356	Octodon_degus
ENSSPAG00000019105	srl	100	97.314	ENSONIG00000005192	srl	100	97.314	Oreochromis_niloticus
ENSSPAG00000019105	srl	96	82.159	ENSOCUG00000025140	SRL	50	82.159	Oryctolagus_cuniculus
ENSSPAG00000019105	srl	94	74.887	ENSORLG00000015064	SRL	97	74.887	Oryzias_latipes
ENSSPAG00000019105	srl	100	95.868	ENSORLG00000008291	srl	97	95.868	Oryzias_latipes
ENSSPAG00000019105	srl	94	75.113	ENSORLG00020018173	SRL	97	75.113	Oryzias_latipes_hni
ENSSPAG00000019105	srl	100	96.281	ENSORLG00020019784	srl	85	96.281	Oryzias_latipes_hni
ENSSPAG00000019105	srl	100	96.281	ENSORLG00015009342	srl	97	96.281	Oryzias_latipes_hsok
ENSSPAG00000019105	srl	94	75.113	ENSORLG00015019063	SRL	97	75.113	Oryzias_latipes_hsok
ENSSPAG00000019105	srl	94	73.626	ENSOMEG00000005682	SRL	53	73.742	Oryzias_melastigma
ENSSPAG00000019105	srl	100	95.661	ENSOMEG00000010006	srl	100	95.661	Oryzias_melastigma
ENSSPAG00000019105	srl	96	82.159	ENSOGAG00000029266	SRL	54	83.296	Otolemur_garnettii
ENSSPAG00000019105	srl	99	81.624	ENSOARG00000003074	SRL	58	81.624	Ovis_aries
ENSSPAG00000019105	srl	96	82.418	ENSPPAG00000024919	-	99	83.953	Pan_paniscus
ENSSPAG00000019105	srl	100	80.338	ENSPPRG00000010274	SRL	99	83.721	Panthera_pardus
ENSSPAG00000019105	srl	100	80.338	ENSPTIG00000015162	SRL	99	83.721	Panthera_tigris_altaica
ENSSPAG00000019105	srl	96	82.418	ENSPTRG00000007712	SRL	99	83.953	Pan_troglodytes
ENSSPAG00000019105	srl	97	81.878	ENSPANG00000013804	SRL	98	81.878	Papio_anubis
ENSSPAG00000019105	srl	100	79.025	ENSPKIG00000024974	SRL	94	79.025	Paramormyrops_kingsleyae
ENSSPAG00000019105	srl	100	91.358	ENSPKIG00000006405	srl	100	91.358	Paramormyrops_kingsleyae
ENSSPAG00000019105	srl	94	75.566	ENSPMGG00000023505	-	99	75.566	Periophthalmus_magnuspinnatus
ENSSPAG00000019105	srl	96	94.457	ENSPMGG00000021081	srl	97	94.457	Periophthalmus_magnuspinnatus
ENSSPAG00000019105	srl	96	83.002	ENSPEMG00000015842	Srl	100	81.356	Peromyscus_maniculatus_bairdii
ENSSPAG00000019105	srl	89	68.879	ENSPMAG00000004786	srl	99	68.879	Petromyzon_marinus
ENSSPAG00000019105	srl	95	83.370	ENSPCIG00000012128	SRL	99	83.370	Phascolarctos_cinereus
ENSSPAG00000019105	srl	100	95.041	ENSPFOG00000011408	srl	98	92.902	Poecilia_formosa
ENSSPAG00000019105	srl	97	94.118	ENSPLAG00000008017	srl	99	94.118	Poecilia_latipinna
ENSSPAG00000019105	srl	94	76.923	ENSPLAG00000002932	SRL	98	76.923	Poecilia_latipinna
ENSSPAG00000019105	srl	95	74.514	ENSPMEG00000005890	SRL	61	74.082	Poecilia_mexicana
ENSSPAG00000019105	srl	100	94.915	ENSPMEG00000006745	srl	99	94.118	Poecilia_mexicana
ENSSPAG00000019105	srl	97	75.267	ENSPREG00000000315	SRL	100	77.060	Poecilia_reticulata
ENSSPAG00000019105	srl	100	95.041	ENSPREG00000007751	srl	99	95.778	Poecilia_reticulata
ENSSPAG00000019105	srl	89	85.442	ENSPPYG00000007053	SRL	98	85.442	Pongo_abelii
ENSSPAG00000019105	srl	96	82.781	ENSPCAG00000003378	-	50	84.127	Procavia_capensis
ENSSPAG00000019105	srl	96	82.781	ENSPCOG00000023135	SRL	99	84.419	Propithecus_coquereli
ENSSPAG00000019105	srl	96	83.002	ENSPVAG00000006586	SRL	56	83.002	Pteropus_vampyrus
ENSSPAG00000019105	srl	95	74.082	ENSPNYG00000003423	SRL	58	74.082	Pundamilia_nyererei
ENSSPAG00000019105	srl	100	97.107	ENSPNYG00000001200	srl	100	97.107	Pundamilia_nyererei
ENSSPAG00000019105	srl	100	91.529	ENSPNAG00000023106	srl	100	91.529	Pygocentrus_nattereri
ENSSPAG00000019105	srl	93	75.737	ENSPNAG00000007361	-	91	75.737	Pygocentrus_nattereri
ENSSPAG00000019105	srl	96	83.480	ENSRNOG00000005269	Srl	50	83.480	Rattus_norvegicus
ENSSPAG00000019105	srl	96	82.237	ENSRBIG00000042358	SRL	51	82.237	Rhinopithecus_bieti
ENSSPAG00000019105	srl	94	83.710	ENSSBOG00000029273	SRL	100	80.550	Saimiri_boliviensis_boliviensis
ENSSPAG00000019105	srl	100	91.942	ENSSFOG00015009773	srl	100	91.942	Scleropages_formosus
ENSSPAG00000019105	srl	94	78.281	ENSSFOG00015021327	SRL	51	76.139	Scleropages_formosus
ENSSPAG00000019105	srl	93	74.945	ENSSMAG00000002232	SRL	50	74.945	Scophthalmus_maximus
ENSSPAG00000019105	srl	100	95.127	ENSSMAG00000016274	srl	100	95.975	Scophthalmus_maximus
ENSSPAG00000019105	srl	94	97.968	ENSSDUG00000010808	srl	98	97.968	Seriola_dumerili
ENSSPAG00000019105	srl	94	76.889	ENSSDUG00000009161	SRL	99	76.889	Seriola_dumerili
ENSSPAG00000019105	srl	94	76.638	ENSSLDG00000014601	SRL	100	77.193	Seriola_lalandi_dorsalis
ENSSPAG00000019105	srl	100	96.694	ENSSLDG00000022024	srl	100	96.694	Seriola_lalandi_dorsalis
ENSSPAG00000019105	srl	96	82.561	ENSSPUG00000016859	SRL	99	82.561	Sphenodon_punctatus
ENSSPAG00000019105	srl	96	82.561	ENSSSCG00000007949	SRL	98	83.900	Sus_scrofa
ENSSPAG00000019105	srl	77	86.188	ENSTGUG00000016121	-	100	86.188	Taeniopygia_guttata
ENSSPAG00000019105	srl	96	82.483	ENSTGUG00000003951	-	99	82.483	Taeniopygia_guttata
ENSSPAG00000019105	srl	89	78.520	ENSTRUG00000013310	SRL	55	78.520	Takifugu_rubripes
ENSSPAG00000019105	srl	100	96.398	ENSTRUG00000006005	srl	100	96.398	Takifugu_rubripes
ENSSPAG00000019105	srl	100	95.763	ENSTNIG00000009739	srl	100	95.763	Tetraodon_nigroviridis
ENSSPAG00000019105	srl	94	83.484	ENSUAMG00000005701	SRL	55	83.484	Ursus_americanus
ENSSPAG00000019105	srl	94	83.484	ENSUMAG00000002574	SRL	55	83.484	Ursus_maritimus
ENSSPAG00000019105	srl	96	81.938	ENSVVUG00000016331	-	50	81.938	Vulpes_vulpes
ENSSPAG00000019105	srl	99	79.406	ENSXETG00000017313	srl	99	81.818	Xenopus_tropicalis
ENSSPAG00000019105	srl	89	95.962	ENSXCOG00000010424	srl	97	95.962	Xiphophorus_couchianus
ENSSPAG00000019105	srl	95	77.111	ENSXCOG00000014584	SRL	99	77.111	Xiphophorus_couchianus
ENSSPAG00000019105	srl	97	74.414	ENSXMAG00000027598	SRL	63	74.730	Xiphophorus_maculatus
ENSSPAG00000019105	srl	100	94.835	ENSXMAG00000004625	srl	95	94.835	Xiphophorus_maculatus