EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPAG00000020548 (Gene tree)
Gene ID: 103367615
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Stegastes_partitus
Status: putative
Strand: Minus strand
Length: 3227 bases
Position: chrKK581143.1:42455-45681
Accession: 103367615
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPAP00000027247	LSM	PF01423.22	2.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPAT00000027691	-	638	XM_008295699	ENSSPAP00000027247	133 (aa)	XP_008293921	UPI000495CFBD

Gene Model

Click here to download ENSSPAG00000020548's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPAG00000020548's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPAG00000020548	lsm1	100	84.962	ENSG00000175324	LSM1	100	84.962	Homo_sapiens
ENSSPAG00000020548	lsm1	100	99.248	ENSAPOG00000010833	lsm1	100	99.248	Acanthochromis_polyacanthus
ENSSPAG00000020548	lsm1	100	84.962	ENSAMEG00000011141	LSM1	100	84.962	Ailuropoda_melanoleuca
ENSSPAG00000020548	lsm1	58	100.000	ENSACIG00000019593	lsm1	64	100.000	Amphilophus_citrinellus
ENSSPAG00000020548	lsm1	100	99.248	ENSAOCG00000017997	-	100	99.248	Amphiprion_ocellaris
ENSSPAG00000020548	lsm1	100	99.248	ENSAOCG00000017096	lsm1	100	99.248	Amphiprion_ocellaris
ENSSPAG00000020548	lsm1	100	99.248	ENSAPEG00000011669	lsm1	100	99.248	Amphiprion_percula
ENSSPAG00000020548	lsm1	100	99.248	ENSATEG00000022266	lsm1	100	99.248	Anabas_testudineus
ENSSPAG00000020548	lsm1	100	84.962	ENSANAG00000027785	LSM1	100	84.962	Aotus_nancymaae
ENSSPAG00000020548	lsm1	100	98.496	ENSACLG00000011400	lsm1	100	98.496	Astatotilapia_calliptera
ENSSPAG00000020548	lsm1	100	82.707	ENSAMXG00000005441	lsm1	100	82.707	Astyanax_mexicanus
ENSSPAG00000020548	lsm1	100	84.211	ENSBTAG00000001612	LSM1	100	84.211	Bos_taurus
ENSSPAG00000020548	lsm1	70	55.914	WBGene00003076	lsm-1	73	55.914	Caenorhabditis_elegans
ENSSPAG00000020548	lsm1	100	84.211	ENSCJAG00000048015	LSM1	100	84.211	Callithrix_jacchus
ENSSPAG00000020548	lsm1	100	84.962	ENSCAFG00000006113	LSM1	100	84.962	Canis_familiaris
ENSSPAG00000020548	lsm1	100	84.962	ENSCAFG00020001822	LSM1	100	84.962	Canis_lupus_dingo
ENSSPAG00000020548	lsm1	100	84.962	ENSCHIG00000013194	LSM1	100	84.962	Capra_hircus
ENSSPAG00000020548	lsm1	100	84.962	ENSTSYG00000010394	LSM1	100	84.962	Carlito_syrichta
ENSSPAG00000020548	lsm1	100	84.962	ENSCPOG00000032671	LSM1	100	84.962	Cavia_porcellus
ENSSPAG00000020548	lsm1	100	84.962	ENSCCAG00000037171	LSM1	100	84.962	Cebus_capucinus
ENSSPAG00000020548	lsm1	100	84.962	ENSCATG00000020377	LSM1	100	84.962	Cercocebus_atys
ENSSPAG00000020548	lsm1	100	83.459	ENSCLAG00000001137	LSM1	100	83.459	Chinchilla_lanigera
ENSSPAG00000020548	lsm1	100	84.962	ENSCSAG00000015485	LSM1	100	84.962	Chlorocebus_sabaeus
ENSSPAG00000020548	lsm1	100	84.211	ENSCHOG00000006030	LSM1	100	84.211	Choloepus_hoffmanni
ENSSPAG00000020548	lsm1	95	78.740	ENSCPBG00000006569	LSM1	86	78.740	Chrysemys_picta_bellii
ENSSPAG00000020548	lsm1	99	62.879	ENSCING00000013536	-	100	62.121	Ciona_intestinalis
ENSSPAG00000020548	lsm1	100	84.962	ENSCANG00000019173	LSM1	100	84.962	Colobus_angolensis_palliatus
ENSSPAG00000020548	lsm1	100	84.211	ENSCGRG00001024560	-	100	84.211	Cricetulus_griseus_chok1gshd
ENSSPAG00000020548	lsm1	80	72.072	ENSCGRG00001002259	-	97	72.072	Cricetulus_griseus_chok1gshd
ENSSPAG00000020548	lsm1	80	72.072	ENSCGRG00000013603	-	97	72.072	Cricetulus_griseus_crigri
ENSSPAG00000020548	lsm1	100	84.211	ENSCGRG00000006554	-	100	84.211	Cricetulus_griseus_crigri
ENSSPAG00000020548	lsm1	100	96.241	ENSCSEG00000008319	lsm1	92	96.241	Cynoglossus_semilaevis
ENSSPAG00000020548	lsm1	100	98.496	ENSCSEG00000010570	lsm1	92	98.496	Cynoglossus_semilaevis
ENSSPAG00000020548	lsm1	100	97.744	ENSCVAG00000003871	lsm1	100	97.744	Cyprinodon_variegatus
ENSSPAG00000020548	lsm1	100	81.955	ENSDARG00000043177	lsm1	100	81.955	Danio_rerio
ENSSPAG00000020548	lsm1	89	66.387	ENSDNOG00000046620	-	100	66.387	Dasypus_novemcinctus
ENSSPAG00000020548	lsm1	100	84.211	ENSDNOG00000032911	-	100	84.211	Dasypus_novemcinctus
ENSSPAG00000020548	lsm1	99	80.303	ENSDNOG00000030989	-	99	80.303	Dasypus_novemcinctus
ENSSPAG00000020548	lsm1	100	84.962	ENSDNOG00000046387	-	100	84.962	Dasypus_novemcinctus
ENSSPAG00000020548	lsm1	100	84.962	ENSDORG00000028172	Lsm1	100	84.962	Dipodomys_ordii
ENSSPAG00000020548	lsm1	93	58.871	FBgn0261067	LSm1	91	58.871	Drosophila_melanogaster
ENSSPAG00000020548	lsm1	100	83.459	ENSEASG00005016677	LSM1	100	83.459	Equus_asinus_asinus
ENSSPAG00000020548	lsm1	100	83.459	ENSECAG00000010461	LSM1	100	83.459	Equus_caballus
ENSSPAG00000020548	lsm1	100	63.158	ENSEEUG00000015181	LSM1	100	63.158	Erinaceus_europaeus
ENSSPAG00000020548	lsm1	100	78.195	ENSELUG00000023374	lsm1	100	78.195	Esox_lucius
ENSSPAG00000020548	lsm1	100	93.985	ENSELUG00000002322	lsm1	100	93.985	Esox_lucius
ENSSPAG00000020548	lsm1	100	84.962	ENSFCAG00000039335	LSM1	100	84.962	Felis_catus
ENSSPAG00000020548	lsm1	89	82.203	ENSFALG00000006723	LSM1	100	82.203	Ficedula_albicollis
ENSSPAG00000020548	lsm1	100	84.962	ENSFDAG00000007658	LSM1	100	84.962	Fukomys_damarensis
ENSSPAG00000020548	lsm1	100	97.744	ENSFHEG00000009556	lsm1	100	97.744	Fundulus_heteroclitus
ENSSPAG00000020548	lsm1	100	96.241	ENSGMOG00000016651	lsm1	98	96.241	Gadus_morhua
ENSSPAG00000020548	lsm1	100	81.955	ENSGALG00000003245	LSM1	100	81.955	Gallus_gallus
ENSSPAG00000020548	lsm1	100	97.744	ENSGAFG00000011355	lsm1	100	97.744	Gambusia_affinis
ENSSPAG00000020548	lsm1	100	96.992	ENSGACG00000011763	lsm1	98	96.992	Gasterosteus_aculeatus
ENSSPAG00000020548	lsm1	100	84.962	ENSGAGG00000024065	LSM1	100	84.962	Gopherus_agassizii
ENSSPAG00000020548	lsm1	100	84.962	ENSGGOG00000022658	LSM1	100	84.962	Gorilla_gorilla
ENSSPAG00000020548	lsm1	100	98.496	ENSHBUG00000010897	lsm1	100	98.496	Haplochromis_burtoni
ENSSPAG00000020548	lsm1	100	84.962	ENSHGLG00000005711	LSM1	100	84.962	Heterocephalus_glaber_female
ENSSPAG00000020548	lsm1	100	69.173	ENSHGLG00000017574	-	100	69.173	Heterocephalus_glaber_female
ENSSPAG00000020548	lsm1	100	84.962	ENSHGLG00100017660	LSM1	100	84.962	Heterocephalus_glaber_male
ENSSPAG00000020548	lsm1	100	69.173	ENSHGLG00100012152	-	100	69.173	Heterocephalus_glaber_male
ENSSPAG00000020548	lsm1	100	98.496	ENSHCOG00000017233	lsm1	100	98.496	Hippocampus_comes
ENSSPAG00000020548	lsm1	100	81.203	ENSIPUG00000002312	LSM1	100	81.203	Ictalurus_punctatus
ENSSPAG00000020548	lsm1	62	87.952	ENSSTOG00000026870	LSM1	100	87.952	Ictidomys_tridecemlineatus
ENSSPAG00000020548	lsm1	100	84.211	ENSJJAG00000014605	-	100	84.211	Jaculus_jaculus
ENSSPAG00000020548	lsm1	100	99.248	ENSKMAG00000003016	lsm1	100	99.248	Kryptolebias_marmoratus
ENSSPAG00000020548	lsm1	100	98.496	ENSLBEG00000022352	lsm1	100	98.496	Labrus_bergylta
ENSSPAG00000020548	lsm1	90	80.833	ENSLACG00000010947	LSM1	99	80.833	Latimeria_chalumnae
ENSSPAG00000020548	lsm1	100	85.714	ENSLOCG00000015149	lsm1	100	85.714	Lepisosteus_oculatus
ENSSPAG00000020548	lsm1	100	84.962	ENSLAFG00000003534	LSM1	100	84.962	Loxodonta_africana
ENSSPAG00000020548	lsm1	100	84.962	ENSMFAG00000032661	LSM1	100	84.962	Macaca_fascicularis
ENSSPAG00000020548	lsm1	100	84.962	ENSMLEG00000034535	LSM1	100	84.962	Mandrillus_leucophaeus
ENSSPAG00000020548	lsm1	100	98.496	ENSMAMG00000007464	lsm1	100	98.496	Mastacembelus_armatus
ENSSPAG00000020548	lsm1	100	98.496	ENSMZEG00005010321	lsm1	100	98.496	Maylandia_zebra
ENSSPAG00000020548	lsm1	100	81.955	ENSMGAG00000002125	LSM1	100	81.955	Meleagris_gallopavo
ENSSPAG00000020548	lsm1	100	84.962	ENSMICG00000030726	LSM1	100	84.962	Microcebus_murinus
ENSSPAG00000020548	lsm1	100	84.211	ENSMOCG00000022817	Lsm1	100	84.211	Microtus_ochrogaster
ENSSPAG00000020548	lsm1	100	97.744	ENSMMOG00000015466	lsm1	100	97.744	Mola_mola
ENSSPAG00000020548	lsm1	100	85.714	ENSMODG00000010732	-	100	85.714	Monodelphis_domestica
ENSSPAG00000020548	lsm1	58	100.000	ENSMALG00000001478	lsm1	82	100.000	Monopterus_albus
ENSSPAG00000020548	lsm1	100	84.962	MGP_CAROLIEiJ_G0030930	Lsm1	100	84.962	Mus_caroli
ENSSPAG00000020548	lsm1	100	84.962	ENSMUSG00000037296	Lsm1	100	84.962	Mus_musculus
ENSSPAG00000020548	lsm1	100	84.962	MGP_PahariEiJ_G0021400	Lsm1	100	84.962	Mus_pahari
ENSSPAG00000020548	lsm1	100	84.962	MGP_SPRETEiJ_G0032049	Lsm1	100	84.962	Mus_spretus
ENSSPAG00000020548	lsm1	100	85.714	ENSMPUG00000009883	LSM1	100	85.714	Mustela_putorius_furo
ENSSPAG00000020548	lsm1	100	84.962	ENSMLUG00000003734	LSM1	100	84.962	Myotis_lucifugus
ENSSPAG00000020548	lsm1	100	84.211	ENSNGAG00000003753	Lsm1	100	84.211	Nannospalax_galili
ENSSPAG00000020548	lsm1	58	100.000	ENSNBRG00000017370	lsm1	66	100.000	Neolamprologus_brichardi
ENSSPAG00000020548	lsm1	100	84.962	ENSNLEG00000029390	LSM1	100	84.962	Nomascus_leucogenys
ENSSPAG00000020548	lsm1	100	85.714	ENSMEUG00000014077	LSM1	100	85.714	Notamacropus_eugenii
ENSSPAG00000020548	lsm1	88	78.632	ENSOPRG00000000333	LSM1	100	78.632	Ochotona_princeps
ENSSPAG00000020548	lsm1	100	84.962	ENSODEG00000004834	LSM1	100	84.962	Octodon_degus
ENSSPAG00000020548	lsm1	100	98.496	ENSONIG00000010782	lsm1	100	98.496	Oreochromis_niloticus
ENSSPAG00000020548	lsm1	100	85.714	ENSOANG00000003256	LSM1	100	85.714	Ornithorhynchus_anatinus
ENSSPAG00000020548	lsm1	100	84.962	ENSOCUG00000015399	LSM1	100	84.962	Oryctolagus_cuniculus
ENSSPAG00000020548	lsm1	100	97.744	ENSORLG00000030288	lsm1	100	97.744	Oryzias_latipes
ENSSPAG00000020548	lsm1	100	97.744	ENSORLG00020003941	lsm1	100	97.744	Oryzias_latipes_hni
ENSSPAG00000020548	lsm1	100	96.241	ENSORLG00020006213	-	86	96.241	Oryzias_latipes_hni
ENSSPAG00000020548	lsm1	100	97.744	ENSORLG00015018350	lsm1	100	97.744	Oryzias_latipes_hsok
ENSSPAG00000020548	lsm1	100	97.744	ENSOMEG00000012454	lsm1	100	97.744	Oryzias_melastigma
ENSSPAG00000020548	lsm1	100	84.962	ENSOGAG00000015161	LSM1	100	84.962	Otolemur_garnettii
ENSSPAG00000020548	lsm1	100	84.962	ENSOARG00000001317	LSM1	100	84.962	Ovis_aries
ENSSPAG00000020548	lsm1	100	84.962	ENSPPAG00000032279	LSM1	100	84.962	Pan_paniscus
ENSSPAG00000020548	lsm1	100	84.962	ENSPPRG00000014172	-	100	84.962	Panthera_pardus
ENSSPAG00000020548	lsm1	100	84.962	ENSPTIG00000010289	LSM1	100	84.962	Panthera_tigris_altaica
ENSSPAG00000020548	lsm1	100	84.962	ENSPTRG00000020169	LSM1	100	84.962	Pan_troglodytes
ENSSPAG00000020548	lsm1	100	84.962	ENSPANG00000008814	LSM1	100	84.962	Papio_anubis
ENSSPAG00000020548	lsm1	100	78.195	ENSPKIG00000019409	LSM1	99	78.195	Paramormyrops_kingsleyae
ENSSPAG00000020548	lsm1	100	86.466	ENSPKIG00000001839	lsm1	100	86.466	Paramormyrops_kingsleyae
ENSSPAG00000020548	lsm1	98	79.231	ENSPSIG00000012563	LSM1	99	79.231	Pelodiscus_sinensis
ENSSPAG00000020548	lsm1	58	100.000	ENSPMGG00000022999	lsm1	73	100.000	Periophthalmus_magnuspinnatus
ENSSPAG00000020548	lsm1	85	72.566	ENSPMAG00000002671	lsm1	100	72.566	Petromyzon_marinus
ENSSPAG00000020548	lsm1	100	84.211	ENSPCIG00000008880	LSM1	100	84.211	Phascolarctos_cinereus
ENSSPAG00000020548	lsm1	100	97.744	ENSPFOG00000016029	lsm1	100	97.744	Poecilia_formosa
ENSSPAG00000020548	lsm1	100	97.744	ENSPLAG00000007879	lsm1	100	97.744	Poecilia_latipinna
ENSSPAG00000020548	lsm1	100	97.744	ENSPMEG00000023550	lsm1	100	97.744	Poecilia_mexicana
ENSSPAG00000020548	lsm1	100	97.744	ENSPREG00000009574	lsm1	100	97.744	Poecilia_reticulata
ENSSPAG00000020548	lsm1	100	84.962	ENSPPYG00000018521	LSM1	100	84.962	Pongo_abelii
ENSSPAG00000020548	lsm1	100	84.962	ENSPCOG00000020901	-	100	84.962	Propithecus_coquereli
ENSSPAG00000020548	lsm1	100	84.962	ENSPVAG00000006016	LSM1	100	84.962	Pteropus_vampyrus
ENSSPAG00000020548	lsm1	100	98.496	ENSPNYG00000018067	lsm1	100	98.496	Pundamilia_nyererei
ENSSPAG00000020548	lsm1	100	81.955	ENSPNAG00000013707	lsm1	100	81.955	Pygocentrus_nattereri
ENSSPAG00000020548	lsm1	100	82.707	ENSRNOG00000015375	Lsm1	100	82.707	Rattus_norvegicus
ENSSPAG00000020548	lsm1	100	84.962	ENSRBIG00000027449	LSM1	100	84.962	Rhinopithecus_bieti
ENSSPAG00000020548	lsm1	100	84.962	ENSRROG00000036074	LSM1	100	84.962	Rhinopithecus_roxellana
ENSSPAG00000020548	lsm1	80	44.248	YJL124C	LSM1	66	44.248	Saccharomyces_cerevisiae
ENSSPAG00000020548	lsm1	100	85.714	ENSSHAG00000017260	LSM1	100	85.714	Sarcophilus_harrisii
ENSSPAG00000020548	lsm1	100	85.714	ENSSFOG00015019528	lsm1	100	85.714	Scleropages_formosus
ENSSPAG00000020548	lsm1	100	99.248	ENSSMAG00000004930	lsm1	100	99.248	Scophthalmus_maximus
ENSSPAG00000020548	lsm1	100	97.744	ENSSDUG00000021823	lsm1	100	97.744	Seriola_dumerili
ENSSPAG00000020548	lsm1	100	97.744	ENSSLDG00000012154	lsm1	100	97.744	Seriola_lalandi_dorsalis
ENSSPAG00000020548	lsm1	100	84.962	ENSSPUG00000014878	LSM1	100	84.962	Sphenodon_punctatus
ENSSPAG00000020548	lsm1	100	83.459	ENSSSCG00000039058	LSM1	100	83.459	Sus_scrofa
ENSSPAG00000020548	lsm1	100	84.211	ENSTGUG00000004793	LSM1	100	84.211	Taeniopygia_guttata
ENSSPAG00000020548	lsm1	100	94.737	ENSTRUG00000025239	lsm1	100	94.737	Takifugu_rubripes
ENSSPAG00000020548	lsm1	100	91.729	ENSTNIG00000004055	lsm1	100	91.729	Tetraodon_nigroviridis
ENSSPAG00000020548	lsm1	88	82.906	ENSTBEG00000015884	LSM1	100	82.906	Tupaia_belangeri
ENSSPAG00000020548	lsm1	100	84.962	ENSTTRG00000004482	LSM1	100	84.962	Tursiops_truncatus
ENSSPAG00000020548	lsm1	100	84.962	ENSUAMG00000004103	LSM1	100	84.962	Ursus_americanus
ENSSPAG00000020548	lsm1	100	84.962	ENSUMAG00000009132	LSM1	100	84.962	Ursus_maritimus
ENSSPAG00000020548	lsm1	58	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSSPAG00000020548	lsm1	100	84.962	ENSVVUG00000020191	LSM1	100	84.962	Vulpes_vulpes
ENSSPAG00000020548	lsm1	61	64.198	ENSVVUG00000014880	-	86	64.198	Vulpes_vulpes
ENSSPAG00000020548	lsm1	100	80.292	ENSXETG00000009004	lsm1	100	80.292	Xenopus_tropicalis
ENSSPAG00000020548	lsm1	100	96.241	ENSXCOG00000015631	lsm1	100	96.241	Xiphophorus_couchianus
ENSSPAG00000020548	lsm1	100	96.241	ENSXMAG00000026637	lsm1	100	96.241	Xiphophorus_maculatus