EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPUG00000000590 (Gene tree)
Gene ID: -
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 136845 bases
Position: chrQEPC01006282.1:9505515-9642359
Accession: 11097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000000700	ResIII	PF04851.15	2.2e-11	1	1
ENSSPUP00000000700	DEAD	PF00270.29	6.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000000741	SMARCA1-201	3252	-	ENSSPUP00000000700	1033 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000000590's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000000590's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPUG00000000590	SMARCA1	94	86.763	ENSSPUG00000007604	SMARCA5	97	91.071
ENSSPUG00000000590	SMARCA1	53	45.091	ENSSPUG00000016865	CHD1L	61	45.091

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000000590	SMARCA1	94	92.103	ENSG00000102038	SMARCA1	95	90.572	Homo_sapiens
ENSSPUG00000000590	SMARCA1	92	85.445	ENSAPOG00000016035	smarca5	96	85.650	Acanthochromis_polyacanthus
ENSSPUG00000000590	SMARCA1	94	90.881	ENSAMEG00000015218	SMARCA1	92	90.900	Ailuropoda_melanoleuca
ENSSPUG00000000590	SMARCA1	85	85.714	ENSACIG00000016982	smarca5	97	85.829	Amphilophus_citrinellus
ENSSPUG00000000590	SMARCA1	92	85.445	ENSAOCG00000015578	smarca5	96	82.932	Amphiprion_ocellaris
ENSSPUG00000000590	SMARCA1	92	85.445	ENSAPEG00000011117	smarca5	97	85.732	Amphiprion_percula
ENSSPUG00000000590	SMARCA1	96	82.929	ENSATEG00000012894	smarca5	96	82.613	Anabas_testudineus
ENSSPUG00000000590	SMARCA1	93	97.185	ENSAPLG00000013149	SMARCA1	98	97.185	Anas_platyrhynchos
ENSSPUG00000000590	SMARCA1	98	95.945	ENSACAG00000011376	SMARCA1	94	97.457	Anolis_carolinensis
ENSSPUG00000000590	SMARCA1	94	86.872	ENSANAG00000023098	SMARCA1	92	86.899	Aotus_nancymaae
ENSSPUG00000000590	SMARCA1	98	82.510	ENSACLG00000025356	smarca5	95	83.789	Astatotilapia_calliptera
ENSSPUG00000000590	SMARCA1	89	91.658	ENSAMXG00000011227	smarca1	100	91.658	Astyanax_mexicanus
ENSSPUG00000000590	SMARCA1	98	81.782	ENSAMXG00000005709	smarca5	97	81.782	Astyanax_mexicanus
ENSSPUG00000000590	SMARCA1	94	91.795	ENSBTAG00000002292	SMARCA1	97	88.759	Bos_taurus
ENSSPUG00000000590	SMARCA1	92	64.087	WBGene00002169	isw-1	93	64.632	Caenorhabditis_elegans
ENSSPUG00000000590	SMARCA1	94	92.205	ENSCJAG00000002868	SMARCA1	92	92.221	Callithrix_jacchus
ENSSPUG00000000590	SMARCA1	94	81.855	ENSCAFG00000018673	SMARCA1	97	83.051	Canis_familiaris
ENSSPUG00000000590	SMARCA1	94	92.308	ENSCAFG00020001751	SMARCA1	92	92.323	Canis_lupus_dingo
ENSSPUG00000000590	SMARCA1	94	91.897	ENSCHIG00000009837	SMARCA1	97	88.533	Capra_hircus
ENSSPUG00000000590	SMARCA1	97	89.526	ENSTSYG00000004240	SMARCA1	99	91.001	Carlito_syrichta
ENSSPUG00000000590	SMARCA1	97	88.462	ENSCPOG00000013601	SMARCA1	95	89.769	Cavia_porcellus
ENSSPUG00000000590	SMARCA1	94	89.026	ENSCCAG00000030817	SMARCA1	92	89.048	Cebus_capucinus
ENSSPUG00000000590	SMARCA1	95	91.658	ENSCATG00000015921	SMARCA1	95	91.675	Cercocebus_atys
ENSSPUG00000000590	SMARCA1	94	91.385	ENSCLAG00000002171	SMARCA1	97	88.121	Chinchilla_lanigera
ENSSPUG00000000590	SMARCA1	94	92.103	ENSCSAG00000008460	SMARCA1	92	92.119	Chlorocebus_sabaeus
ENSSPUG00000000590	SMARCA1	95	97.546	ENSCPBG00000001146	SMARCA1	92	97.546	Chrysemys_picta_bellii
ENSSPUG00000000590	SMARCA1	95	73.030	ENSCING00000004110	swi/snf	94	74.686	Ciona_intestinalis
ENSSPUG00000000590	SMARCA1	92	74.608	ENSCSAVG00000004620	-	99	75.112	Ciona_savignyi
ENSSPUG00000000590	SMARCA1	94	92.000	ENSCANG00000007183	SMARCA1	92	92.016	Colobus_angolensis_palliatus
ENSSPUG00000000590	SMARCA1	94	90.741	ENSCGRG00001010776	Smarca1	95	88.967	Cricetulus_griseus_chok1gshd
ENSSPUG00000000590	SMARCA1	95	89.293	ENSCGRG00000015301	Smarca1	99	89.293	Cricetulus_griseus_crigri
ENSSPUG00000000590	SMARCA1	98	81.764	ENSCSEG00000000328	smarca5	96	82.915	Cynoglossus_semilaevis
ENSSPUG00000000590	SMARCA1	96	82.247	ENSCVAG00000008668	smarca5	97	85.024	Cyprinodon_variegatus
ENSSPUG00000000590	SMARCA1	97	82.189	ENSDARG00000052348	smarca5	96	81.548	Danio_rerio
ENSSPUG00000000590	SMARCA1	97	87.769	ENSDARG00000012776	smarca1	95	89.036	Danio_rerio
ENSSPUG00000000590	SMARCA1	97	89.772	ENSDNOG00000004315	SMARCA1	94	91.420	Dasypus_novemcinctus
ENSSPUG00000000590	SMARCA1	97	89.264	ENSDORG00000009270	Smarca1	95	90.660	Dipodomys_ordii
ENSSPUG00000000590	SMARCA1	94	73.143	FBgn0011604	Iswi	92	74.843	Drosophila_melanogaster
ENSSPUG00000000590	SMARCA1	79	90.909	ENSETEG00000017426	SMARCA1	86	90.909	Echinops_telfairi
ENSSPUG00000000590	SMARCA1	97	81.238	ENSEBUG00000001239	smarca5	97	82.551	Eptatretus_burgeri
ENSSPUG00000000590	SMARCA1	95	87.513	ENSEASG00005008218	SMARCA1	96	88.613	Equus_asinus_asinus
ENSSPUG00000000590	SMARCA1	95	91.472	ENSECAG00000012106	SMARCA1	95	90.188	Equus_caballus
ENSSPUG00000000590	SMARCA1	78	91.391	ENSEEUG00000014927	SMARCA1	83	91.391	Erinaceus_europaeus
ENSSPUG00000000590	SMARCA1	95	89.596	ENSELUG00000010515	smarca1	95	90.442	Esox_lucius
ENSSPUG00000000590	SMARCA1	95	91.922	ENSFCAG00000018496	SMARCA1	95	90.139	Felis_catus
ENSSPUG00000000590	SMARCA1	88	96.714	ENSFALG00000000209	SMARCA1	98	96.714	Ficedula_albicollis
ENSSPUG00000000590	SMARCA1	95	90.161	ENSFDAG00000009818	SMARCA1	98	90.161	Fukomys_damarensis
ENSSPUG00000000590	SMARCA1	98	81.097	ENSFHEG00000007687	smarca5	91	85.714	Fundulus_heteroclitus
ENSSPUG00000000590	SMARCA1	98	96.051	ENSGALG00000008431	SMARCA1	99	96.051	Gallus_gallus
ENSSPUG00000000590	SMARCA1	96	82.748	ENSGAFG00000017731	smarca5	96	82.814	Gambusia_affinis
ENSSPUG00000000590	SMARCA1	92	97.682	ENSGAGG00000023575	SMARCA1	98	97.682	Gopherus_agassizii
ENSSPUG00000000590	SMARCA1	72	86.582	ENSGGOG00000012841	-	95	86.582	Gorilla_gorilla
ENSSPUG00000000590	SMARCA1	94	91.077	ENSHGLG00000003080	SMARCA1	95	89.569	Heterocephalus_glaber_female
ENSSPUG00000000590	SMARCA1	94	90.686	ENSHGLG00100001102	SMARCA1	98	90.686	Heterocephalus_glaber_male
ENSSPUG00000000590	SMARCA1	93	85.162	ENSHCOG00000005458	smarca5	96	82.998	Hippocampus_comes
ENSSPUG00000000590	SMARCA1	95	83.418	ENSIPUG00000005229	SMARCA5	95	84.544	Ictalurus_punctatus
ENSSPUG00000000590	SMARCA1	95	88.516	ENSIPUG00000016905	Smarca1	96	90.381	Ictalurus_punctatus
ENSSPUG00000000590	SMARCA1	95	92.119	ENSSTOG00000014524	SMARCA1	95	90.735	Ictidomys_tridecemlineatus
ENSSPUG00000000590	SMARCA1	96	90.303	ENSJJAG00000002593	Smarca1	95	90.303	Jaculus_jaculus
ENSSPUG00000000590	SMARCA1	93	84.848	ENSKMAG00000003777	smarca5	93	84.369	Kryptolebias_marmoratus
ENSSPUG00000000590	SMARCA1	96	82.710	ENSLBEG00000018112	smarca5	95	82.843	Labrus_bergylta
ENSSPUG00000000590	SMARCA1	92	83.070	ENSLBEG00000013295	SMARCA1	100	85.335	Labrus_bergylta
ENSSPUG00000000590	SMARCA1	96	93.219	ENSLACG00000016697	SMARCA1	96	93.769	Latimeria_chalumnae
ENSSPUG00000000590	SMARCA1	93	93.132	ENSLOCG00000014591	smarca1	94	93.132	Lepisosteus_oculatus
ENSSPUG00000000590	SMARCA1	95	90.414	ENSLAFG00000000896	SMARCA1	100	90.414	Loxodonta_africana
ENSSPUG00000000590	SMARCA1	97	90.070	ENSMFAG00000002117	SMARCA1	98	91.388	Macaca_fascicularis
ENSSPUG00000000590	SMARCA1	95	91.658	ENSMMUG00000008818	SMARCA1	99	91.675	Macaca_mulatta
ENSSPUG00000000590	SMARCA1	97	90.070	ENSMNEG00000041768	SMARCA1	98	91.388	Macaca_nemestrina
ENSSPUG00000000590	SMARCA1	94	92.103	ENSMLEG00000043198	SMARCA1	92	92.119	Mandrillus_leucophaeus
ENSSPUG00000000590	SMARCA1	96	82.748	ENSMAMG00000014294	smarca5	93	84.783	Mastacembelus_armatus
ENSSPUG00000000590	SMARCA1	98	82.510	ENSMZEG00005009369	smarca5	95	83.789	Maylandia_zebra
ENSSPUG00000000590	SMARCA1	95	95.657	ENSMGAG00000007042	SMARCA1	98	95.657	Meleagris_gallopavo
ENSSPUG00000000590	SMARCA1	95	89.645	ENSMAUG00000008133	Smarca1	95	89.394	Mesocricetus_auratus
ENSSPUG00000000590	SMARCA1	95	92.331	ENSMICG00000015768	SMARCA1	95	90.637	Microcebus_murinus
ENSSPUG00000000590	SMARCA1	98	86.855	ENSMOCG00000009464	Smarca1	95	89.067	Microtus_ochrogaster
ENSSPUG00000000590	SMARCA1	94	83.058	ENSMMOG00000005547	smarca5	97	83.058	Mola_mola
ENSSPUG00000000590	SMARCA1	97	93.954	ENSMODG00000013187	-	94	96.012	Monodelphis_domestica
ENSSPUG00000000590	SMARCA1	93	85.057	ENSMALG00000002081	smarca5	98	83.282	Monopterus_albus
ENSSPUG00000000590	SMARCA1	95	90.132	MGP_CAROLIEiJ_G0033034	Smarca1	95	89.798	Mus_caroli
ENSSPUG00000000590	SMARCA1	95	90.234	ENSMUSG00000031099	Smarca1	95	89.899	Mus_musculus
ENSSPUG00000000590	SMARCA1	95	90.132	MGP_PahariEiJ_G0031579	Smarca1	95	89.798	Mus_pahari
ENSSPUG00000000590	SMARCA1	95	90.234	MGP_SPRETEiJ_G0034192	Smarca1	95	89.899	Mus_spretus
ENSSPUG00000000590	SMARCA1	94	90.983	ENSMPUG00000017423	SMARCA1	87	91.001	Mustela_putorius_furo
ENSSPUG00000000590	SMARCA1	95	89.415	ENSMLUG00000029614	SMARCA1	93	89.506	Myotis_lucifugus
ENSSPUG00000000590	SMARCA1	95	90.660	ENSNGAG00000006492	Smarca1	95	90.404	Nannospalax_galili
ENSSPUG00000000590	SMARCA1	93	85.432	ENSNBRG00000004463	smarca5	97	85.093	Neolamprologus_brichardi
ENSSPUG00000000590	SMARCA1	95	90.578	ENSNLEG00000015179	SMARCA1	99	90.578	Nomascus_leucogenys
ENSSPUG00000000590	SMARCA1	91	85.819	ENSMEUG00000008819	SMARCA1	100	85.819	Notamacropus_eugenii
ENSSPUG00000000590	SMARCA1	98	88.184	ENSODEG00000012163	SMARCA1	97	88.184	Octodon_degus
ENSSPUG00000000590	SMARCA1	98	82.510	ENSONIG00000009993	smarca5	95	83.789	Oreochromis_niloticus
ENSSPUG00000000590	SMARCA1	92	97.050	ENSOANG00000002862	SMARCA1	98	97.050	Ornithorhynchus_anatinus
ENSSPUG00000000590	SMARCA1	94	91.897	ENSOCUG00000001047	SMARCA1	95	90.348	Oryctolagus_cuniculus
ENSSPUG00000000590	SMARCA1	96	83.737	ENSORLG00000021998	smarca5	95	83.874	Oryzias_latipes
ENSSPUG00000000590	SMARCA1	93	85.789	ENSORLG00020017679	smarca5	93	85.300	Oryzias_latipes_hni
ENSSPUG00000000590	SMARCA1	93	85.684	ENSORLG00015017210	smarca5	95	83.773	Oryzias_latipes_hsok
ENSSPUG00000000590	SMARCA1	93	85.789	ENSOMEG00000000086	smarca5	95	83.874	Oryzias_melastigma
ENSSPUG00000000590	SMARCA1	95	90.854	ENSOGAG00000004399	SMARCA1	95	90.873	Otolemur_garnettii
ENSSPUG00000000590	SMARCA1	93	92.259	ENSOARG00000014638	SMARCA1	98	92.259	Ovis_aries
ENSSPUG00000000590	SMARCA1	94	92.103	ENSPPAG00000034647	SMARCA1	92	92.119	Pan_paniscus
ENSSPUG00000000590	SMARCA1	95	92.127	ENSPPRG00000008929	SMARCA1	95	90.339	Panthera_pardus
ENSSPUG00000000590	SMARCA1	94	90.232	ENSPTIG00000000915	SMARCA1	96	90.232	Panthera_tigris_altaica
ENSSPUG00000000590	SMARCA1	95	91.658	ENSPTRG00000049876	SMARCA1	95	91.675	Pan_troglodytes
ENSSPUG00000000590	SMARCA1	94	92.103	ENSPANG00000003871	SMARCA1	92	92.119	Papio_anubis
ENSSPUG00000000590	SMARCA1	95	86.904	ENSPKIG00000013411	smarca1	99	88.332	Paramormyrops_kingsleyae
ENSSPUG00000000590	SMARCA1	95	96.364	ENSPSIG00000010101	SMARCA1	98	97.787	Pelodiscus_sinensis
ENSSPUG00000000590	SMARCA1	95	90.254	ENSPEMG00000017503	Smarca1	95	90.000	Peromyscus_maniculatus_bairdii
ENSSPUG00000000590	SMARCA1	99	93.197	ENSPCIG00000015460	SMARCA1	99	95.000	Phascolarctos_cinereus
ENSSPUG00000000590	SMARCA1	93	84.953	ENSPFOG00000007649	smarca5	96	82.613	Poecilia_formosa
ENSSPUG00000000590	SMARCA1	93	84.953	ENSPLAG00000003363	smarca5	96	82.613	Poecilia_latipinna
ENSSPUG00000000590	SMARCA1	93	85.057	ENSPMEG00000019849	smarca5	96	82.714	Poecilia_mexicana
ENSSPUG00000000590	SMARCA1	93	85.057	ENSPREG00000023250	smarca5	98	81.379	Poecilia_reticulata
ENSSPUG00000000590	SMARCA1	94	89.231	ENSPPYG00000020703	SMARCA1	92	89.253	Pongo_abelii
ENSSPUG00000000590	SMARCA1	76	83.712	ENSPCOG00000020722	SMARCA1	94	87.959	Propithecus_coquereli
ENSSPUG00000000590	SMARCA1	90	90.434	ENSPVAG00000003805	SMARCA1	95	83.952	Pteropus_vampyrus
ENSSPUG00000000590	SMARCA1	57	86.849	ENSPNYG00000012299	smarca5	91	85.946	Pundamilia_nyererei
ENSSPUG00000000590	SMARCA1	95	90.593	ENSRNOG00000003762	Smarca1	92	90.686	Rattus_norvegicus
ENSSPUG00000000590	SMARCA1	94	92.000	ENSRROG00000034167	SMARCA1	92	92.016	Rhinopithecus_roxellana
ENSSPUG00000000590	SMARCA1	93	92.573	ENSSBOG00000020641	SMARCA1	98	92.573	Saimiri_boliviensis_boliviensis
ENSSPUG00000000590	SMARCA1	92	88.608	ENSSHAG00000013518	SMARCA1	97	88.608	Sarcophilus_harrisii
ENSSPUG00000000590	SMARCA1	95	83.825	ENSSFOG00015016794	smarca5	98	85.579	Scleropages_formosus
ENSSPUG00000000590	SMARCA1	95	89.767	ENSSFOG00015009043	smarca1	96	90.650	Scleropages_formosus
ENSSPUG00000000590	SMARCA1	96	82.146	ENSSMAG00000004801	smarca5	93	84.161	Scophthalmus_maximus
ENSSPUG00000000590	SMARCA1	93	84.703	ENSSDUG00000020690	smarca5	96	82.863	Seriola_dumerili
ENSSPUG00000000590	SMARCA1	93	84.703	ENSSLDG00000025190	smarca5	96	82.863	Seriola_lalandi_dorsalis
ENSSPUG00000000590	SMARCA1	88	83.514	ENSSARG00000000842	SMARCA1	92	83.514	Sorex_araneus
ENSSPUG00000000590	SMARCA1	96	83.249	ENSSPAG00000002894	smarca5	94	85.650	Stegastes_partitus
ENSSPUG00000000590	SMARCA1	95	91.914	ENSSSCG00000012649	SMARCA1	97	89.911	Sus_scrofa
ENSSPUG00000000590	SMARCA1	93	96.976	ENSTGUG00000003899	-	98	96.976	Taeniopygia_guttata
ENSSPUG00000000590	SMARCA1	96	82.447	ENSTRUG00000014094	smarca5	93	84.472	Takifugu_rubripes
ENSSPUG00000000590	SMARCA1	97	81.057	ENSTNIG00000017717	smarca5	92	83.230	Tetraodon_nigroviridis
ENSSPUG00000000590	SMARCA1	95	84.438	ENSTBEG00000014973	SMARCA1	100	84.438	Tupaia_belangeri
ENSSPUG00000000590	SMARCA1	95	87.475	ENSTTRG00000006168	SMARCA1	100	87.475	Tursiops_truncatus
ENSSPUG00000000590	SMARCA1	94	91.692	ENSUAMG00000020201	SMARCA1	92	91.709	Ursus_americanus
ENSSPUG00000000590	SMARCA1	95	87.080	ENSUMAG00000004073	SMARCA1	97	92.214	Ursus_maritimus
ENSSPUG00000000590	SMARCA1	75	92.512	ENSVPAG00000010492	-	80	92.512	Vicugna_pacos
ENSSPUG00000000590	SMARCA1	94	92.316	ENSVVUG00000008878	SMARCA1	100	92.589	Vulpes_vulpes
ENSSPUG00000000590	SMARCA1	93	93.952	ENSXETG00000001526	smarca1	96	93.952	Xenopus_tropicalis
ENSSPUG00000000590	SMARCA1	96	82.714	ENSXCOG00000011170	smarca5	96	84.472	Xiphophorus_couchianus
ENSSPUG00000000590	SMARCA1	96	82.648	ENSXMAG00000009678	smarca5	99	83.726	Xiphophorus_maculatus