EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPUG00000001028 (Gene tree)
Gene ID: -
Gene Symbol: SF3B4
Alias: Hsh49|SAP49|SF3b49
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 10055 bases
Position: chrQEPC01015423.1:2042298-2052352
Accession: 10771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000001288	RRM_1	PF00076.22	2.2e-39	1	2
ENSSPUP00000001288	RRM_1	PF00076.22	2.2e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000001365	SF3B4-201	1200	-	ENSSPUP00000001288	399 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000001028's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000001028's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPUG00000001028	SF3B4	52	35.484	ENSSPUG00000004233	PABPC1L	57	38.095

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000001028	SF3B4	57	98.684	ENSG00000143368	SF3B4	99	97.354	Homo_sapiens
ENSSPUG00000001028	SF3B4	57	98.684	ENSAMEG00000010073	SF3B4	72	95.102	Ailuropoda_melanoleuca
ENSSPUG00000001028	SF3B4	58	96.537	ENSACIG00000018455	sf3b4	63	99.065	Amphilophus_citrinellus
ENSSPUG00000001028	SF3B4	54	100.000	ENSACAG00000010019	SF3B4	100	83.568	Anolis_carolinensis
ENSSPUG00000001028	SF3B4	57	98.684	ENSANAG00000031025	SF3B4	72	95.102	Aotus_nancymaae
ENSSPUG00000001028	SF3B4	51	97.030	ENSBTAG00000012793	-	54	93.151	Bos_taurus
ENSSPUG00000001028	SF3B4	57	98.684	ENSBTAG00000012495	SF3B4	72	95.102	Bos_taurus
ENSSPUG00000001028	SF3B4	57	98.684	ENSCAFG00000011617	SF3B4	72	95.102	Canis_familiaris
ENSSPUG00000001028	SF3B4	57	98.684	ENSCAFG00020019775	SF3B4	72	95.102	Canis_lupus_dingo
ENSSPUG00000001028	SF3B4	57	98.684	ENSCHIG00000025663	-	72	95.102	Capra_hircus
ENSSPUG00000001028	SF3B4	57	98.684	ENSTSYG00000009295	SF3B4	72	95.102	Carlito_syrichta
ENSSPUG00000001028	SF3B4	88	80.259	ENSCAPG00000006451	SF3B4	96	76.791	Cavia_aperea
ENSSPUG00000001028	SF3B4	57	98.684	ENSCPOG00000008267	SF3B4	72	95.102	Cavia_porcellus
ENSSPUG00000001028	SF3B4	72	69.401	ENSCCAG00000019823	-	63	85.909	Cebus_capucinus
ENSSPUG00000001028	SF3B4	93	75.721	ENSCCAG00000021751	-	99	73.077	Cebus_capucinus
ENSSPUG00000001028	SF3B4	57	98.684	ENSCATG00000033114	SF3B4	72	95.102	Cercocebus_atys
ENSSPUG00000001028	SF3B4	57	98.684	ENSCLAG00000015851	SF3B4	72	95.102	Chinchilla_lanigera
ENSSPUG00000001028	SF3B4	57	98.684	ENSCSAG00000018129	SF3B4	72	95.102	Chlorocebus_sabaeus
ENSSPUG00000001028	SF3B4	54	90.654	ENSCING00000002337	-	58	90.654	Ciona_intestinalis
ENSSPUG00000001028	SF3B4	52	91.429	ENSCSAVG00000007809	-	89	89.881	Ciona_savignyi
ENSSPUG00000001028	SF3B4	57	98.684	ENSCANG00000035579	SF3B4	72	95.102	Colobus_angolensis_palliatus
ENSSPUG00000001028	SF3B4	57	98.684	ENSCGRG00001003590	Sf3b4	72	95.102	Cricetulus_griseus_chok1gshd
ENSSPUG00000001028	SF3B4	57	98.684	ENSCGRG00000016914	Sf3b4	72	95.102	Cricetulus_griseus_crigri
ENSSPUG00000001028	SF3B4	59	94.915	ENSCVAG00000005536	sf3b4	76	81.481	Cyprinodon_variegatus
ENSSPUG00000001028	SF3B4	58	98.261	ENSDARG00000018574	sf3b4	62	94.715	Danio_rerio
ENSSPUG00000001028	SF3B4	55	93.182	ENSDNOG00000048908	-	71	89.873	Dasypus_novemcinctus
ENSSPUG00000001028	SF3B4	57	98.684	ENSDORG00000016366	Sf3b4	72	95.102	Dipodomys_ordii
ENSSPUG00000001028	SF3B4	55	86.425	FBgn0015818	Spx	62	88.318	Drosophila_melanogaster
ENSSPUG00000001028	SF3B4	57	88.596	ENSETEG00000008963	SF3B4	70	85.714	Echinops_telfairi
ENSSPUG00000001028	SF3B4	57	98.684	ENSEASG00005001477	SF3B4	72	95.102	Equus_asinus_asinus
ENSSPUG00000001028	SF3B4	57	98.684	ENSECAG00000024737	SF3B4	72	95.102	Equus_caballus
ENSSPUG00000001028	SF3B4	57	98.684	ENSFCAG00000010106	SF3B4	72	95.102	Felis_catus
ENSSPUG00000001028	SF3B4	57	98.684	ENSFDAG00000009286	SF3B4	72	95.102	Fukomys_damarensis
ENSSPUG00000001028	SF3B4	58	97.391	ENSGMOG00000002519	sf3b4	63	99.533	Gadus_morhua
ENSSPUG00000001028	SF3B4	54	100.000	ENSGALG00000013352	SF3B4	100	82.394	Gallus_gallus
ENSSPUG00000001028	SF3B4	57	98.253	ENSGAFG00000010181	sf3b4	64	93.651	Gambusia_affinis
ENSSPUG00000001028	SF3B4	57	98.678	ENSGACG00000003819	sf3b4	61	95.436	Gasterosteus_aculeatus
ENSSPUG00000001028	SF3B4	57	98.684	ENSGGOG00000004761	SF3B4	72	95.102	Gorilla_gorilla
ENSSPUG00000001028	SF3B4	99	57.773	ENSGGOG00000038845	-	55	88.318	Gorilla_gorilla
ENSSPUG00000001028	SF3B4	57	98.684	ENSHGLG00000012360	SF3B4	72	95.102	Heterocephalus_glaber_female
ENSSPUG00000001028	SF3B4	58	98.261	ENSIPUG00000012242	Sf3b4	62	94.715	Ictalurus_punctatus
ENSSPUG00000001028	SF3B4	57	98.684	ENSSTOG00000000684	-	72	95.102	Ictidomys_tridecemlineatus
ENSSPUG00000001028	SF3B4	98	57.720	ENSSTOG00000029627	-	54	73.529	Ictidomys_tridecemlineatus
ENSSPUG00000001028	SF3B4	59	96.610	ENSKMAG00000008154	sf3b4	63	94.715	Kryptolebias_marmoratus
ENSSPUG00000001028	SF3B4	57	98.684	ENSLACG00000004436	SF3B4	67	95.510	Latimeria_chalumnae
ENSSPUG00000001028	SF3B4	90	65.517	ENSMFAG00000039067	-	60	79.279	Macaca_fascicularis
ENSSPUG00000001028	SF3B4	57	98.684	ENSMFAG00000042395	SF3B4	72	95.102	Macaca_fascicularis
ENSSPUG00000001028	SF3B4	57	98.684	ENSMMUG00000007256	SF3B4	72	95.102	Macaca_mulatta
ENSSPUG00000001028	SF3B4	57	98.684	ENSMNEG00000031839	SF3B4	72	95.102	Macaca_nemestrina
ENSSPUG00000001028	SF3B4	90	64.987	ENSMNEG00000031526	-	60	78.829	Macaca_nemestrina
ENSSPUG00000001028	SF3B4	57	98.684	ENSMLEG00000038667	SF3B4	72	95.102	Mandrillus_leucophaeus
ENSSPUG00000001028	SF3B4	57	98.684	ENSMAUG00000015266	Sf3b4	72	95.102	Mesocricetus_auratus
ENSSPUG00000001028	SF3B4	57	98.684	ENSMICG00000044961	SF3B4	72	95.102	Microcebus_murinus
ENSSPUG00000001028	SF3B4	51	98.049	ENSMOCG00000014155	-	76	92.797	Microtus_ochrogaster
ENSSPUG00000001028	SF3B4	57	99.127	ENSMMOG00000018032	sf3b4	61	96.266	Mola_mola
ENSSPUG00000001028	SF3B4	57	98.684	ENSMODG00000018767	SF3B4	72	95.102	Monodelphis_domestica
ENSSPUG00000001028	SF3B4	57	98.684	ENSMUSG00000068856	Sf3b4	72	95.102	Mus_musculus
ENSSPUG00000001028	SF3B4	57	98.684	MGP_PahariEiJ_G0026809	Sf3b4	72	95.102	Mus_pahari
ENSSPUG00000001028	SF3B4	57	98.684	MGP_SPRETEiJ_G0026309	Sf3b4	72	95.102	Mus_spretus
ENSSPUG00000001028	SF3B4	57	98.684	ENSMPUG00000005563	SF3B4	72	95.102	Mustela_putorius_furo
ENSSPUG00000001028	SF3B4	57	98.684	ENSMLUG00000010789	SF3B4	72	95.102	Myotis_lucifugus
ENSSPUG00000001028	SF3B4	99	64.988	ENSNLEG00000000537	-	62	86.420	Nomascus_leucogenys
ENSSPUG00000001028	SF3B4	57	94.298	ENSOPRG00000010808	SF3B4	72	91.020	Ochotona_princeps
ENSSPUG00000001028	SF3B4	57	81.659	ENSODEG00000003597	-	61	79.268	Octodon_degus
ENSSPUG00000001028	SF3B4	87	59.299	ENSODEG00000008916	-	63	70.248	Octodon_degus
ENSSPUG00000001028	SF3B4	56	79.556	ENSOANG00000004768	-	50	81.944	Ornithorhynchus_anatinus
ENSSPUG00000001028	SF3B4	57	98.684	ENSOCUG00000004614	SF3B4	72	95.102	Oryctolagus_cuniculus
ENSSPUG00000001028	SF3B4	58	97.845	ENSORLG00000003062	sf3b4	61	97.034	Oryzias_latipes
ENSSPUG00000001028	SF3B4	57	98.684	ENSOGAG00000006265	SF3B4	72	95.102	Otolemur_garnettii
ENSSPUG00000001028	SF3B4	57	98.684	ENSOARG00000020718	-	72	95.102	Ovis_aries
ENSSPUG00000001028	SF3B4	99	61.717	ENSPPAG00000030024	-	60	85.306	Pan_paniscus
ENSSPUG00000001028	SF3B4	57	98.684	ENSPPAG00000040904	SF3B4	72	95.102	Pan_paniscus
ENSSPUG00000001028	SF3B4	57	98.684	ENSPPRG00000007384	SF3B4	72	95.102	Panthera_pardus
ENSSPUG00000001028	SF3B4	57	98.684	ENSPTIG00000014530	SF3B4	71	95.102	Panthera_tigris_altaica
ENSSPUG00000001028	SF3B4	99	61.395	ENSPTRG00000049727	-	61	85.714	Pan_troglodytes
ENSSPUG00000001028	SF3B4	57	98.684	ENSPTRG00000001243	SF3B4	72	95.102	Pan_troglodytes
ENSSPUG00000001028	SF3B4	57	98.684	ENSPANG00000005126	SF3B4	72	95.102	Papio_anubis
ENSSPUG00000001028	SF3B4	58	97.845	ENSPKIG00000020669	sf3b4	65	95.122	Paramormyrops_kingsleyae
ENSSPUG00000001028	SF3B4	64	84.375	ENSPSIG00000009565	SF3B4	74	96.059	Pelodiscus_sinensis
ENSSPUG00000001028	SF3B4	57	98.684	ENSPEMG00000017568	Sf3b4	72	95.102	Peromyscus_maniculatus_bairdii
ENSSPUG00000001028	SF3B4	57	98.684	ENSPCIG00000008765	SF3B4	72	95.102	Phascolarctos_cinereus
ENSSPUG00000001028	SF3B4	59	95.763	ENSPFOG00000005754	sf3b4	62	93.902	Poecilia_formosa
ENSSPUG00000001028	SF3B4	52	96.635	ENSPCAG00000000392	SF3B4	60	96.635	Procavia_capensis
ENSSPUG00000001028	SF3B4	57	98.684	ENSPCOG00000015399	SF3B4	72	95.102	Propithecus_coquereli
ENSSPUG00000001028	SF3B4	57	98.684	ENSPVAG00000014171	SF3B4	72	95.102	Pteropus_vampyrus
ENSSPUG00000001028	SF3B4	58	97.826	ENSPNAG00000000686	sf3b4	63	94.309	Pygocentrus_nattereri
ENSSPUG00000001028	SF3B4	57	98.684	ENSRNOG00000021181	Sf3b4	72	95.102	Rattus_norvegicus
ENSSPUG00000001028	SF3B4	57	98.684	ENSRBIG00000043392	SF3B4	72	95.102	Rhinopithecus_bieti
ENSSPUG00000001028	SF3B4	91	61.214	ENSRROG00000028213	-	60	73.191	Rhinopithecus_roxellana
ENSSPUG00000001028	SF3B4	57	98.684	ENSRROG00000029366	SF3B4	72	95.102	Rhinopithecus_roxellana
ENSSPUG00000001028	SF3B4	88	63.228	ENSSBOG00000025174	-	53	74.286	Saimiri_boliviensis_boliviensis
ENSSPUG00000001028	SF3B4	57	98.246	ENSSBOG00000012310	-	72	94.694	Saimiri_boliviensis_boliviensis
ENSSPUG00000001028	SF3B4	57	93.860	ENSSHAG00000004043	SF3B4	72	90.612	Sarcophilus_harrisii
ENSSPUG00000001028	SF3B4	58	98.261	ENSSPAG00000019219	sf3b4	66	86.232	Stegastes_partitus
ENSSPUG00000001028	SF3B4	84	58.140	ENSSSCG00000039440	-	60	62.857	Sus_scrofa
ENSSPUG00000001028	SF3B4	69	86.861	ENSTGUG00000004470	SF3B4	97	86.861	Taeniopygia_guttata
ENSSPUG00000001028	SF3B4	57	97.817	ENSTNIG00000009156	sf3b4	100	72.195	Tetraodon_nigroviridis
ENSSPUG00000001028	SF3B4	57	98.684	ENSTTRG00000005217	SF3B4	72	95.102	Tursiops_truncatus
ENSSPUG00000001028	SF3B4	57	98.684	ENSUAMG00000022468	SF3B4	72	95.102	Ursus_americanus
ENSSPUG00000001028	SF3B4	57	98.684	ENSUMAG00000003802	SF3B4	77	95.102	Ursus_maritimus
ENSSPUG00000001028	SF3B4	54	98.611	ENSVPAG00000008152	SF3B4	71	94.850	Vicugna_pacos
ENSSPUG00000001028	SF3B4	57	98.684	ENSVVUG00000007732	-	74	95.102	Vulpes_vulpes
ENSSPUG00000001028	SF3B4	55	96.380	ENSXETG00000011038	sf3b4	54	100.000	Xenopus_tropicalis
ENSSPUG00000001028	SF3B4	57	98.253	ENSXCOG00000019895	sf3b4	63	94.309	Xiphophorus_couchianus
ENSSPUG00000001028	SF3B4	57	98.253	ENSXMAG00000003772	sf3b4	79	76.282	Xiphophorus_maculatus