EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000001642 (Gene tree)
Gene ID: -
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 64845 bases
Position: chrQEPC01008364.1:131165-196009
Accession: 16060
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000002108	TruB_N	PF01509.18	1.2e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000002227	TRUB1-201	1265	-	ENSSPUP00000002108	290 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000001642's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000001642's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000001642	TRUB1	96	77.143	ENSG00000165832	TRUB1	85	74.747	Homo_sapiens
ENSSPUG00000001642	TRUB1	84	70.902	ENSAPOG00000020565	trub1	95	68.061	Acanthochromis_polyacanthus
ENSSPUG00000001642	TRUB1	96	76.950	ENSAMEG00000014931	TRUB1	80	76.950	Ailuropoda_melanoleuca
ENSSPUG00000001642	TRUB1	90	61.977	ENSACIG00000003060	trub1	87	61.977	Amphilophus_citrinellus
ENSSPUG00000001642	TRUB1	84	70.902	ENSAOCG00000017188	trub1	95	68.061	Amphiprion_ocellaris
ENSSPUG00000001642	TRUB1	90	67.681	ENSAPEG00000015209	trub1	95	67.681	Amphiprion_percula
ENSSPUG00000001642	TRUB1	85	70.445	ENSATEG00000023291	trub1	88	70.445	Anabas_testudineus
ENSSPUG00000001642	TRUB1	96	81.004	ENSAPLG00000006808	TRUB1	100	81.004	Anas_platyrhynchos
ENSSPUG00000001642	TRUB1	92	75.373	ENSACAG00000009282	TRUB1	97	75.373	Anolis_carolinensis
ENSSPUG00000001642	TRUB1	96	77.500	ENSANAG00000022870	TRUB1	80	77.500	Aotus_nancymaae
ENSSPUG00000001642	TRUB1	96	65.357	ENSACLG00000000823	trub1	100	65.357	Astatotilapia_calliptera
ENSSPUG00000001642	TRUB1	90	67.816	ENSAMXG00000015845	trub1	87	67.816	Astyanax_mexicanus
ENSSPUG00000001642	TRUB1	96	77.500	ENSBTAG00000012955	TRUB1	80	77.500	Bos_taurus
ENSSPUG00000001642	TRUB1	96	77.500	ENSCJAG00000047815	TRUB1	80	77.500	Callithrix_jacchus
ENSSPUG00000001642	TRUB1	96	77.500	ENSCAFG00000011688	TRUB1	80	77.500	Canis_familiaris
ENSSPUG00000001642	TRUB1	96	77.500	ENSCAFG00020013237	TRUB1	80	77.500	Canis_lupus_dingo
ENSSPUG00000001642	TRUB1	96	77.857	ENSCHIG00000020884	TRUB1	84	77.857	Capra_hircus
ENSSPUG00000001642	TRUB1	96	77.500	ENSTSYG00000000446	TRUB1	80	77.500	Carlito_syrichta
ENSSPUG00000001642	TRUB1	81	68.776	ENSCAPG00000017088	TRUB1	93	68.776	Cavia_aperea
ENSSPUG00000001642	TRUB1	64	78.610	ENSCPOG00000030129	-	73	78.610	Cavia_porcellus
ENSSPUG00000001642	TRUB1	63	78.804	ENSCPOG00000040236	-	75	78.804	Cavia_porcellus
ENSSPUG00000001642	TRUB1	96	77.143	ENSCCAG00000028842	TRUB1	80	77.143	Cebus_capucinus
ENSSPUG00000001642	TRUB1	96	76.786	ENSCATG00000033431	TRUB1	85	74.411	Cercocebus_atys
ENSSPUG00000001642	TRUB1	66	74.869	ENSCLAG00000008664	TRUB1	78	74.869	Chinchilla_lanigera
ENSSPUG00000001642	TRUB1	96	77.143	ENSCSAG00000004891	TRUB1	85	74.747	Chlorocebus_sabaeus
ENSSPUG00000001642	TRUB1	96	67.025	ENSCHOG00000011931	TRUB1	80	67.025	Choloepus_hoffmanni
ENSSPUG00000001642	TRUB1	100	83.448	ENSCPBG00000003051	TRUB1	100	83.448	Chrysemys_picta_bellii
ENSSPUG00000001642	TRUB1	96	77.143	ENSCANG00000029445	TRUB1	85	74.747	Colobus_angolensis_palliatus
ENSSPUG00000001642	TRUB1	82	74.790	ENSCGRG00001016772	-	80	74.583	Cricetulus_griseus_chok1gshd
ENSSPUG00000001642	TRUB1	91	67.424	ENSCGRG00001010322	-	73	67.647	Cricetulus_griseus_chok1gshd
ENSSPUG00000001642	TRUB1	91	76.136	ENSCGRG00000010806	Trub1	86	74.643	Cricetulus_griseus_crigri
ENSSPUG00000001642	TRUB1	87	64.427	ENSCSEG00000011261	trub1	88	61.314	Cynoglossus_semilaevis
ENSSPUG00000001642	TRUB1	86	69.200	ENSCVAG00000008791	trub1	77	69.200	Cyprinodon_variegatus
ENSSPUG00000001642	TRUB1	91	66.160	ENSDARG00000053805	trub1	91	66.160	Danio_rerio
ENSSPUG00000001642	TRUB1	93	77.206	ENSDNOG00000001069	TRUB1	78	77.206	Dasypus_novemcinctus
ENSSPUG00000001642	TRUB1	94	74.648	ENSDORG00000010431	Trub1	85	74.237	Dipodomys_ordii
ENSSPUG00000001642	TRUB1	71	76.087	ENSETEG00000009183	TRUB1	58	76.087	Echinops_telfairi
ENSSPUG00000001642	TRUB1	96	77.143	ENSEASG00005014739	TRUB1	80	77.143	Equus_asinus_asinus
ENSSPUG00000001642	TRUB1	96	77.143	ENSECAG00000007177	TRUB1	80	77.143	Equus_caballus
ENSSPUG00000001642	TRUB1	93	70.221	ENSEEUG00000013993	TRUB1	80	68.750	Erinaceus_europaeus
ENSSPUG00000001642	TRUB1	85	71.255	ENSELUG00000000502	trub1	86	71.255	Esox_lucius
ENSSPUG00000001642	TRUB1	93	80.147	ENSFCAG00000031927	TRUB1	78	80.147	Felis_catus
ENSSPUG00000001642	TRUB1	83	82.231	ENSFALG00000002232	TRUB1	93	82.231	Ficedula_albicollis
ENSSPUG00000001642	TRUB1	66	76.440	ENSFDAG00000008140	TRUB1	78	76.440	Fukomys_damarensis
ENSSPUG00000001642	TRUB1	91	65.152	ENSFHEG00000004016	trub1	90	65.152	Fundulus_heteroclitus
ENSSPUG00000001642	TRUB1	94	80.292	ENSGALG00000009091	TRUB1	97	80.292	Gallus_gallus
ENSSPUG00000001642	TRUB1	90	64.122	ENSGAFG00000009193	trub1	91	64.122	Gambusia_affinis
ENSSPUG00000001642	TRUB1	67	70.103	ENSGACG00000015387	trub1	95	70.103	Gasterosteus_aculeatus
ENSSPUG00000001642	TRUB1	97	84.397	ENSGAGG00000009758	TRUB1	80	83.929	Gopherus_agassizii
ENSSPUG00000001642	TRUB1	96	77.500	ENSGGOG00000004583	TRUB1	85	75.084	Gorilla_gorilla
ENSSPUG00000001642	TRUB1	96	65.357	ENSHBUG00000016787	trub1	100	65.357	Haplochromis_burtoni
ENSSPUG00000001642	TRUB1	97	74.021	ENSHGLG00000015314	TRUB1	81	74.021	Heterocephalus_glaber_female
ENSSPUG00000001642	TRUB1	66	76.440	ENSHGLG00100009183	TRUB1	81	76.440	Heterocephalus_glaber_male
ENSSPUG00000001642	TRUB1	86	70.683	ENSHCOG00000017877	trub1	90	70.683	Hippocampus_comes
ENSSPUG00000001642	TRUB1	91	66.415	ENSIPUG00000017559	trub1	93	66.415	Ictalurus_punctatus
ENSSPUG00000001642	TRUB1	96	76.429	ENSSTOG00000003641	TRUB1	84	76.429	Ictidomys_tridecemlineatus
ENSSPUG00000001642	TRUB1	96	77.061	ENSJJAG00000011800	Trub1	82	77.061	Jaculus_jaculus
ENSSPUG00000001642	TRUB1	90	66.160	ENSKMAG00000006232	trub1	94	66.160	Kryptolebias_marmoratus
ENSSPUG00000001642	TRUB1	90	66.920	ENSLBEG00000026722	trub1	91	66.920	Labrus_bergylta
ENSSPUG00000001642	TRUB1	96	73.498	ENSLACG00000014885	TRUB1	95	73.498	Latimeria_chalumnae
ENSSPUG00000001642	TRUB1	96	70.863	ENSLOCG00000012979	trub1	94	70.863	Lepisosteus_oculatus
ENSSPUG00000001642	TRUB1	88	78.906	ENSLAFG00000015452	TRUB1	80	75.627	Loxodonta_africana
ENSSPUG00000001642	TRUB1	96	77.143	ENSMFAG00000031767	TRUB1	85	74.747	Macaca_fascicularis
ENSSPUG00000001642	TRUB1	96	77.143	ENSMMUG00000001902	TRUB1	85	74.747	Macaca_mulatta
ENSSPUG00000001642	TRUB1	96	72.143	ENSMNEG00000044646	TRUB1	84	70.034	Macaca_nemestrina
ENSSPUG00000001642	TRUB1	96	77.143	ENSMLEG00000042655	TRUB1	85	74.747	Mandrillus_leucophaeus
ENSSPUG00000001642	TRUB1	96	65.357	ENSMZEG00005024095	trub1	100	65.357	Maylandia_zebra
ENSSPUG00000001642	TRUB1	94	80.147	ENSMGAG00000011135	TRUB1	94	80.147	Meleagris_gallopavo
ENSSPUG00000001642	TRUB1	91	74.621	ENSMAUG00000011101	Trub1	83	73.571	Mesocricetus_auratus
ENSSPUG00000001642	TRUB1	96	77.500	ENSMICG00000016324	TRUB1	80	77.500	Microcebus_murinus
ENSSPUG00000001642	TRUB1	91	75.758	ENSMOCG00000017759	Trub1	85	74.643	Microtus_ochrogaster
ENSSPUG00000001642	TRUB1	93	81.250	ENSMODG00000009676	TRUB1	77	80.287	Monodelphis_domestica
ENSSPUG00000001642	TRUB1	92	76.404	MGP_CAROLIEiJ_G0023100	Trub1	80	76.384	Mus_caroli
ENSSPUG00000001642	TRUB1	92	75.655	ENSMUSG00000025086	Trub1	80	75.646	Mus_musculus
ENSSPUG00000001642	TRUB1	97	73.852	MGP_PahariEiJ_G0014588	Trub1	84	73.852	Mus_pahari
ENSSPUG00000001642	TRUB1	92	75.655	MGP_SPRETEiJ_G0024021	Trub1	80	75.646	Mus_spretus
ENSSPUG00000001642	TRUB1	96	77.857	ENSMPUG00000003556	TRUB1	80	77.857	Mustela_putorius_furo
ENSSPUG00000001642	TRUB1	96	77.061	ENSMLUG00000017686	TRUB1	82	77.061	Myotis_lucifugus
ENSSPUG00000001642	TRUB1	96	75.714	ENSNGAG00000018682	Trub1	86	72.819	Nannospalax_galili
ENSSPUG00000001642	TRUB1	87	69.048	ENSNBRG00000023393	trub1	90	69.048	Neolamprologus_brichardi
ENSSPUG00000001642	TRUB1	96	77.500	ENSNLEG00000016345	TRUB1	85	75.084	Nomascus_leucogenys
ENSSPUG00000001642	TRUB1	69	83.085	ENSMEUG00000006603	TRUB1	77	81.340	Notamacropus_eugenii
ENSSPUG00000001642	TRUB1	96	76.429	ENSOPRG00000009371	TRUB1	87	73.579	Ochotona_princeps
ENSSPUG00000001642	TRUB1	96	73.477	ENSODEG00000010854	TRUB1	80	73.477	Octodon_degus
ENSSPUG00000001642	TRUB1	90	67.681	ENSONIG00000007249	trub1	95	67.681	Oreochromis_niloticus
ENSSPUG00000001642	TRUB1	95	79.061	ENSOANG00000001556	TRUB1	92	78.853	Ornithorhynchus_anatinus
ENSSPUG00000001642	TRUB1	93	78.309	ENSOCUG00000009456	TRUB1	79	78.309	Oryctolagus_cuniculus
ENSSPUG00000001642	TRUB1	84	69.672	ENSORLG00000029719	trub1	94	66.920	Oryzias_latipes
ENSSPUG00000001642	TRUB1	84	70.082	ENSORLG00020016767	trub1	92	67.300	Oryzias_latipes_hni
ENSSPUG00000001642	TRUB1	84	70.082	ENSORLG00015014728	trub1	94	67.300	Oryzias_latipes_hsok
ENSSPUG00000001642	TRUB1	90	65.779	ENSOMEG00000014556	trub1	92	65.779	Oryzias_melastigma
ENSSPUG00000001642	TRUB1	96	77.500	ENSOGAG00000015895	TRUB1	80	77.500	Otolemur_garnettii
ENSSPUG00000001642	TRUB1	96	75.874	ENSOARG00000015591	TRUB1	83	74.915	Ovis_aries
ENSSPUG00000001642	TRUB1	96	77.500	ENSPPAG00000043645	TRUB1	85	75.084	Pan_paniscus
ENSSPUG00000001642	TRUB1	93	79.412	ENSPPRG00000007096	TRUB1	78	79.412	Panthera_pardus
ENSSPUG00000001642	TRUB1	93	79.779	ENSPTIG00000006378	TRUB1	78	79.779	Panthera_tigris_altaica
ENSSPUG00000001642	TRUB1	96	77.500	ENSPTRG00000002964	TRUB1	85	75.084	Pan_troglodytes
ENSSPUG00000001642	TRUB1	96	77.143	ENSPANG00000020712	TRUB1	85	74.747	Papio_anubis
ENSSPUG00000001642	TRUB1	58	70.659	ENSPKIG00000003852	trub1	72	70.659	Paramormyrops_kingsleyae
ENSSPUG00000001642	TRUB1	100	81.034	ENSPSIG00000012877	TRUB1	100	81.034	Pelodiscus_sinensis
ENSSPUG00000001642	TRUB1	90	64.639	ENSPMGG00000000075	trub1	92	64.639	Periophthalmus_magnuspinnatus
ENSSPUG00000001642	TRUB1	99	74.306	ENSPEMG00000011156	Trub1	84	74.306	Peromyscus_maniculatus_bairdii
ENSSPUG00000001642	TRUB1	93	80.882	ENSPCIG00000009729	TRUB1	75	80.144	Phascolarctos_cinereus
ENSSPUG00000001642	TRUB1	88	66.406	ENSPFOG00000009950	trub1	94	66.406	Poecilia_formosa
ENSSPUG00000001642	TRUB1	90	66.160	ENSPLAG00000013855	trub1	91	66.160	Poecilia_latipinna
ENSSPUG00000001642	TRUB1	90	66.160	ENSPMEG00000009064	trub1	94	66.160	Poecilia_mexicana
ENSSPUG00000001642	TRUB1	90	67.681	ENSPREG00000003343	trub1	94	67.681	Poecilia_reticulata
ENSSPUG00000001642	TRUB1	96	77.143	ENSPPYG00000002676	TRUB1	85	74.747	Pongo_abelii
ENSSPUG00000001642	TRUB1	93	70.221	ENSPCAG00000008427	TRUB1	77	70.221	Procavia_capensis
ENSSPUG00000001642	TRUB1	96	71.429	ENSPCOG00000024360	TRUB1	79	71.429	Propithecus_coquereli
ENSSPUG00000001642	TRUB1	70	82.266	ENSPVAG00000007575	TRUB1	83	79.452	Pteropus_vampyrus
ENSSPUG00000001642	TRUB1	96	65.357	ENSPNYG00000018614	trub1	100	65.357	Pundamilia_nyererei
ENSSPUG00000001642	TRUB1	84	62.140	ENSPNAG00000006881	trub1	78	62.140	Pygocentrus_nattereri
ENSSPUG00000001642	TRUB1	96	73.477	ENSRNOG00000017321	Trub1	82	73.477	Rattus_norvegicus
ENSSPUG00000001642	TRUB1	96	69.534	ENSRBIG00000033423	TRUB1	84	67.340	Rhinopithecus_bieti
ENSSPUG00000001642	TRUB1	96	77.143	ENSRROG00000033902	TRUB1	85	74.747	Rhinopithecus_roxellana
ENSSPUG00000001642	TRUB1	96	77.500	ENSSBOG00000024237	TRUB1	80	77.500	Saimiri_boliviensis_boliviensis
ENSSPUG00000001642	TRUB1	82	79.752	ENSSHAG00000009346	TRUB1	81	79.752	Sarcophilus_harrisii
ENSSPUG00000001642	TRUB1	93	68.266	ENSSFOG00015022124	trub1	90	68.266	Scleropages_formosus
ENSSPUG00000001642	TRUB1	90	67.300	ENSSMAG00000001020	trub1	93	67.300	Scophthalmus_maximus
ENSSPUG00000001642	TRUB1	90	66.160	ENSSDUG00000016414	trub1	94	66.540	Seriola_dumerili
ENSSPUG00000001642	TRUB1	90	66.540	ENSSLDG00000015486	trub1	94	66.920	Seriola_lalandi_dorsalis
ENSSPUG00000001642	TRUB1	90	68.821	ENSSPAG00000001217	trub1	94	68.821	Stegastes_partitus
ENSSPUG00000001642	TRUB1	93	78.309	ENSSSCG00000010653	TRUB1	86	73.898	Sus_scrofa
ENSSPUG00000001642	TRUB1	93	81.784	ENSTGUG00000010971	TRUB1	99	81.227	Taeniopygia_guttata
ENSSPUG00000001642	TRUB1	81	63.713	ENSTBEG00000002880	TRUB1	93	63.713	Tupaia_belangeri
ENSSPUG00000001642	TRUB1	72	79.048	ENSTTRG00000005767	TRUB1	77	81.281	Tursiops_truncatus
ENSSPUG00000001642	TRUB1	96	77.857	ENSUAMG00000024876	TRUB1	80	77.857	Ursus_americanus
ENSSPUG00000001642	TRUB1	96	78.136	ENSUMAG00000002411	TRUB1	83	77.857	Ursus_maritimus
ENSSPUG00000001642	TRUB1	96	77.778	ENSVPAG00000005507	TRUB1	78	79.412	Vicugna_pacos
ENSSPUG00000001642	TRUB1	96	77.500	ENSVVUG00000010085	TRUB1	67	77.500	Vulpes_vulpes
ENSSPUG00000001642	TRUB1	95	68.000	ENSXETG00000023828	trub1	99	68.000	Xenopus_tropicalis
ENSSPUG00000001642	TRUB1	87	64.822	ENSXCOG00000017847	trub1	89	64.822	Xiphophorus_couchianus
ENSSPUG00000001642	TRUB1	90	65.399	ENSXMAG00000014701	trub1	94	65.399	Xiphophorus_maculatus