EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000002260 (Gene tree)
Gene ID: -
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 67086 bases
Position: chrQEPC01015423.1:3850820-3917905
Accession: 24644
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000002909	EST1	PF10374.9	4.5e-24	1	1
ENSSPUP00000002901	EST1	PF10374.9	4.7e-24	1	1
ENSSPUP00000002909	EST1_DNA_bind	PF10373.9	3.7e-41	1	2
ENSSPUP00000002909	EST1_DNA_bind	PF10373.9	3.7e-41	2	2
ENSSPUP00000002901	EST1_DNA_bind	PF10373.9	4.3e-41	1	2
ENSSPUP00000002901	EST1_DNA_bind	PF10373.9	4.3e-41	2	2
ENSSPUP00000002901	PIN_4	PF13638.6	1.4e-06	1	1
ENSSPUP00000002909	PIN_4	PF13638.6	1.6e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000003084	SMG5-202	7762	-	ENSSPUP00000002909	962 (aa)	-	-
ENSSPUT00000003076	SMG5-201	7837	-	ENSSPUP00000002901	987 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000002260's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000002260's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000002260	SMG5	100	76.798	ENSG00000198952	SMG5	94	77.609	Homo_sapiens
ENSSPUG00000002260	SMG5	100	65.996	ENSAPOG00000019690	smg5	93	65.758	Acanthochromis_polyacanthus
ENSSPUG00000002260	SMG5	100	74.268	ENSAMEG00000014458	SMG5	96	74.975	Ailuropoda_melanoleuca
ENSSPUG00000002260	SMG5	100	64.329	ENSACIG00000001353	smg5	94	65.331	Amphilophus_citrinellus
ENSSPUG00000002260	SMG5	99	64.293	ENSAOCG00000019483	smg5	92	64.659	Amphiprion_ocellaris
ENSSPUG00000002260	SMG5	100	65.335	ENSAPEG00000022949	smg5	94	64.841	Amphiprion_percula
ENSSPUG00000002260	SMG5	100	64.641	ENSATEG00000005348	smg5	94	64.776	Anabas_testudineus
ENSSPUG00000002260	SMG5	100	88.360	ENSAPLG00000010263	SMG5	96	87.955	Anas_platyrhynchos
ENSSPUG00000002260	SMG5	53	75.296	ENSACAG00000009162	-	99	77.075	Anolis_carolinensis
ENSSPUG00000002260	SMG5	100	76.393	ENSANAG00000032899	SMG5	94	77.305	Aotus_nancymaae
ENSSPUG00000002260	SMG5	100	65.161	ENSACLG00000009311	smg5	93	65.496	Astatotilapia_calliptera
ENSSPUG00000002260	SMG5	100	60.728	ENSAMXG00000024616	smg5	94	61.700	Astyanax_mexicanus
ENSSPUG00000002260	SMG5	99	43.491	ENSBTAG00000021747	-	93	43.623	Bos_taurus
ENSSPUG00000002260	SMG5	100	77.305	ENSBTAG00000009435	SMG5	94	77.812	Bos_taurus
ENSSPUG00000002260	SMG5	100	76.596	ENSCJAG00000005684	SMG5	94	77.508	Callithrix_jacchus
ENSSPUG00000002260	SMG5	100	75.988	ENSCAFG00000016839	SMG5	93	76.393	Canis_familiaris
ENSSPUG00000002260	SMG5	100	75.988	ENSCAFG00020006061	SMG5	93	76.393	Canis_lupus_dingo
ENSSPUG00000002260	SMG5	100	76.596	ENSCHIG00000007709	SMG5	94	77.609	Capra_hircus
ENSSPUG00000002260	SMG5	99	43.826	ENSCHIG00000006323	-	94	43.649	Capra_hircus
ENSSPUG00000002260	SMG5	100	76.697	ENSTSYG00000004099	SMG5	94	77.429	Carlito_syrichta
ENSSPUG00000002260	SMG5	100	57.610	ENSCAPG00000003631	SMG5	99	58.494	Cavia_aperea
ENSSPUG00000002260	SMG5	100	76.441	ENSCPOG00000015696	SMG5	94	77.475	Cavia_porcellus
ENSSPUG00000002260	SMG5	100	76.364	ENSCCAG00000027409	SMG5	94	77.273	Cebus_capucinus
ENSSPUG00000002260	SMG5	100	76.263	ENSCATG00000030539	SMG5	94	77.553	Cercocebus_atys
ENSSPUG00000002260	SMG5	100	76.138	ENSCLAG00000003983	SMG5	94	77.755	Chinchilla_lanigera
ENSSPUG00000002260	SMG5	100	76.263	ENSCSAG00000002120	SMG5	94	77.172	Chlorocebus_sabaeus
ENSSPUG00000002260	SMG5	54	81.780	ENSCHOG00000008741	-	52	81.780	Choloepus_hoffmanni
ENSSPUG00000002260	SMG5	100	89.777	ENSCPBG00000025848	SMG5	100	89.372	Chrysemys_picta_bellii
ENSSPUG00000002260	SMG5	94	32.700	ENSCING00000008706	-	92	32.244	Ciona_intestinalis
ENSSPUG00000002260	SMG5	100	72.929	ENSCANG00000029208	SMG5	93	73.812	Colobus_angolensis_palliatus
ENSSPUG00000002260	SMG5	100	76.744	ENSCGRG00001006336	Smg5	94	77.048	Cricetulus_griseus_chok1gshd
ENSSPUG00000002260	SMG5	100	76.744	ENSCGRG00000005111	Smg5	96	77.048	Cricetulus_griseus_crigri
ENSSPUG00000002260	SMG5	100	63.847	ENSCSEG00000014220	smg5	93	63.964	Cynoglossus_semilaevis
ENSSPUG00000002260	SMG5	100	57.272	ENSCVAG00000000529	smg5	93	57.500	Cyprinodon_variegatus
ENSSPUG00000002260	SMG5	100	61.776	ENSDARG00000041481	smg5	94	62.559	Danio_rerio
ENSSPUG00000002260	SMG5	100	72.644	ENSDNOG00000000051	SMG5	93	73.759	Dasypus_novemcinctus
ENSSPUG00000002260	SMG5	96	35.766	ENSDNOG00000039862	-	97	35.245	Dasypus_novemcinctus
ENSSPUG00000002260	SMG5	100	76.186	ENSDORG00000010382	Smg5	94	76.791	Dipodomys_ordii
ENSSPUG00000002260	SMG5	58	41.935	FBgn0019890	Smg5	53	41.935	Drosophila_melanogaster
ENSSPUG00000002260	SMG5	77	88.350	ENSETEG00000010336	SMG5	77	88.350	Echinops_telfairi
ENSSPUG00000002260	SMG5	100	77.204	ENSEASG00005019122	SMG5	94	78.217	Equus_asinus_asinus
ENSSPUG00000002260	SMG5	100	77.102	ENSECAG00000001389	SMG5	94	78.116	Equus_caballus
ENSSPUG00000002260	SMG5	70	94.118	ENSEEUG00000012690	SMG5	70	94.118	Erinaceus_europaeus
ENSSPUG00000002260	SMG5	100	64.523	ENSELUG00000012585	smg5	93	64.523	Esox_lucius
ENSSPUG00000002260	SMG5	100	76.190	ENSFCAG00000011783	SMG5	93	76.494	Felis_catus
ENSSPUG00000002260	SMG5	61	88.795	ENSFALG00000001166	-	100	88.115	Ficedula_albicollis
ENSSPUG00000002260	SMG5	100	75.907	ENSFDAG00000017388	SMG5	96	76.210	Fukomys_damarensis
ENSSPUG00000002260	SMG5	100	58.380	ENSFHEG00000013939	smg5	93	67.732	Fundulus_heteroclitus
ENSSPUG00000002260	SMG5	100	60.187	ENSGMOG00000007310	smg5	94	60.890	Gadus_morhua
ENSSPUG00000002260	SMG5	100	83.907	ENSGALG00000029918	-	94	83.502	Gallus_gallus
ENSSPUG00000002260	SMG5	70	75.515	ENSGAFG00000021691	smg5	94	56.994	Gambusia_affinis
ENSSPUG00000002260	SMG5	100	61.674	ENSGACG00000013142	smg5	94	62.150	Gasterosteus_aculeatus
ENSSPUG00000002260	SMG5	100	89.777	ENSGAGG00000016131	SMG5	94	89.372	Gopherus_agassizii
ENSSPUG00000002260	SMG5	100	76.263	ENSGGOG00000010932	SMG5	94	77.553	Gorilla_gorilla
ENSSPUG00000002260	SMG5	100	65.300	ENSHBUG00000008654	smg5	94	64.392	Haplochromis_burtoni
ENSSPUG00000002260	SMG5	100	75.378	ENSHGLG00000019152	SMG5	94	75.684	Heterocephalus_glaber_female
ENSSPUG00000002260	SMG5	92	75.673	ENSHGLG00100015948	SMG5	93	76.014	Heterocephalus_glaber_male
ENSSPUG00000002260	SMG5	84	75.211	ENSHCOG00000010229	smg5	86	75.211	Hippocampus_comes
ENSSPUG00000002260	SMG5	100	61.333	ENSIPUG00000006624	Smg5	94	62.702	Ictalurus_punctatus
ENSSPUG00000002260	SMG5	100	77.508	ENSSTOG00000001780	SMG5	94	77.812	Ictidomys_tridecemlineatus
ENSSPUG00000002260	SMG5	100	76.215	ENSJJAG00000022763	Smg5	94	76.215	Jaculus_jaculus
ENSSPUG00000002260	SMG5	55	59.964	ENSKMAG00000014586	smg5	94	60.553	Kryptolebias_marmoratus
ENSSPUG00000002260	SMG5	100	63.654	ENSLBEG00000002145	smg5	93	63.690	Labrus_bergylta
ENSSPUG00000002260	SMG5	100	68.342	ENSLACG00000010521	SMG5	94	69.215	Latimeria_chalumnae
ENSSPUG00000002260	SMG5	100	76.900	ENSLAFG00000006241	SMG5	94	77.710	Loxodonta_africana
ENSSPUG00000002260	SMG5	100	76.263	ENSMFAG00000045357	SMG5	94	77.553	Macaca_fascicularis
ENSSPUG00000002260	SMG5	100	76.263	ENSMMUG00000000090	SMG5	94	77.553	Macaca_mulatta
ENSSPUG00000002260	SMG5	100	76.162	ENSMNEG00000044425	SMG5	94	77.452	Macaca_nemestrina
ENSSPUG00000002260	SMG5	99	71.777	ENSMLEG00000041192	SMG5	95	73.069	Mandrillus_leucophaeus
ENSSPUG00000002260	SMG5	100	61.495	ENSMAMG00000010683	smg5	100	61.963	Mastacembelus_armatus
ENSSPUG00000002260	SMG5	100	62.698	ENSMZEG00005015815	smg5	93	62.985	Maylandia_zebra
ENSSPUG00000002260	SMG5	68	58.565	ENSMZEG00005016543	smg5	100	58.443	Maylandia_zebra
ENSSPUG00000002260	SMG5	100	75.907	ENSMAUG00000010381	Smg5	94	76.210	Mesocricetus_auratus
ENSSPUG00000002260	SMG5	100	76.900	ENSMICG00000002257	SMG5	93	77.812	Microcebus_murinus
ENSSPUG00000002260	SMG5	100	76.008	ENSMOCG00000016590	Smg5	94	76.109	Microtus_ochrogaster
ENSSPUG00000002260	SMG5	100	59.477	ENSMMOG00000017199	smg5	94	59.142	Mola_mola
ENSSPUG00000002260	SMG5	89	79.162	ENSMODG00000016901	SMG5	91	79.627	Monodelphis_domestica
ENSSPUG00000002260	SMG5	86	34.921	ENSMODG00000004532	-	80	38.187	Monodelphis_domestica
ENSSPUG00000002260	SMG5	79	36.754	ENSMODG00000010675	-	82	37.629	Monodelphis_domestica
ENSSPUG00000002260	SMG5	75	37.867	ENSMODG00000004735	-	83	37.867	Monodelphis_domestica
ENSSPUG00000002260	SMG5	99	34.171	ENSMODG00000004511	-	96	34.171	Monodelphis_domestica
ENSSPUG00000002260	SMG5	100	60.688	ENSMALG00000010375	smg5	94	61.059	Monopterus_albus
ENSSPUG00000002260	SMG5	100	75.852	MGP_CAROLIEiJ_G0025163	Smg5	96	95.906	Mus_caroli
ENSSPUG00000002260	SMG5	100	75.852	ENSMUSG00000001415	Smg5	95	95.906	Mus_musculus
ENSSPUG00000002260	SMG5	100	76.542	MGP_PahariEiJ_G0026606	Smg5	96	95.906	Mus_pahari
ENSSPUG00000002260	SMG5	100	75.852	MGP_SPRETEiJ_G0026104	Smg5	96	95.906	Mus_spretus
ENSSPUG00000002260	SMG5	100	74.569	ENSMPUG00000004546	SMG5	100	75.076	Mustela_putorius_furo
ENSSPUG00000002260	SMG5	100	77.048	ENSMLUG00000008518	SMG5	94	77.800	Myotis_lucifugus
ENSSPUG00000002260	SMG5	87	57.025	ENSNGAG00000012101	-	93	43.548	Nannospalax_galili
ENSSPUG00000002260	SMG5	100	77.328	ENSNGAG00000020706	Smg5	94	78.036	Nannospalax_galili
ENSSPUG00000002260	SMG5	97	61.983	ENSNBRG00000004332	smg5	91	61.880	Neolamprologus_brichardi
ENSSPUG00000002260	SMG5	100	76.393	ENSNLEG00000012439	SMG5	94	77.305	Nomascus_leucogenys
ENSSPUG00000002260	SMG5	100	77.429	ENSMEUG00000012834	SMG5	94	77.834	Notamacropus_eugenii
ENSSPUG00000002260	SMG5	100	75.481	ENSOPRG00000009152	SMG5	94	76.089	Ochotona_princeps
ENSSPUG00000002260	SMG5	100	77.406	ENSODEG00000012237	SMG5	93	77.001	Octodon_degus
ENSSPUG00000002260	SMG5	100	61.317	ENSONIG00000008632	smg5	94	61.830	Oreochromis_niloticus
ENSSPUG00000002260	SMG5	93	38.410	ENSOCUG00000023338	-	92	38.212	Oryctolagus_cuniculus
ENSSPUG00000002260	SMG5	100	77.204	ENSOCUG00000012886	SMG5	96	77.710	Oryctolagus_cuniculus
ENSSPUG00000002260	SMG5	100	59.925	ENSORLG00000016239	smg5	94	61.704	Oryzias_latipes
ENSSPUG00000002260	SMG5	100	62.413	ENSORLG00020013127	smg5	93	64.072	Oryzias_latipes_hni
ENSSPUG00000002260	SMG5	100	62.326	ENSORLG00015019014	smg5	93	63.781	Oryzias_latipes_hsok
ENSSPUG00000002260	SMG5	84	59.502	ENSOMEG00000021330	smg5	86	59.977	Oryzias_melastigma
ENSSPUG00000002260	SMG5	100	75.785	ENSOGAG00000004966	SMG5	94	76.798	Otolemur_garnettii
ENSSPUG00000002260	SMG5	99	43.763	ENSOARG00000011963	-	93	43.907	Ovis_aries
ENSSPUG00000002260	SMG5	100	76.494	ENSOARG00000005778	SMG5	94	77.508	Ovis_aries
ENSSPUG00000002260	SMG5	100	76.596	ENSPPAG00000011996	SMG5	94	77.508	Pan_paniscus
ENSSPUG00000002260	SMG5	100	76.089	ENSPPRG00000011901	SMG5	96	76.190	Panthera_pardus
ENSSPUG00000002260	SMG5	99	71.370	ENSPTIG00000007892	SMG5	94	70.859	Panthera_tigris_altaica
ENSSPUG00000002260	SMG5	100	76.596	ENSPTRG00000023925	SMG5	94	77.508	Pan_troglodytes
ENSSPUG00000002260	SMG5	100	76.596	ENSPTRG00000049282	-	94	77.508	Pan_troglodytes
ENSSPUG00000002260	SMG5	100	76.263	ENSPANG00000011201	SMG5	94	77.553	Papio_anubis
ENSSPUG00000002260	SMG5	100	63.737	ENSPKIG00000009402	smg5	93	64.040	Paramormyrops_kingsleyae
ENSSPUG00000002260	SMG5	100	89.372	ENSPSIG00000015198	SMG5	96	87.576	Pelodiscus_sinensis
ENSSPUG00000002260	SMG5	100	60.095	ENSPMGG00000010465	smg5	94	59.544	Periophthalmus_magnuspinnatus
ENSSPUG00000002260	SMG5	100	76.215	ENSPEMG00000001819	Smg5	94	76.441	Peromyscus_maniculatus_bairdii
ENSSPUG00000002260	SMG5	100	46.238	ENSPMAG00000000410	smg5	94	47.886	Petromyzon_marinus
ENSSPUG00000002260	SMG5	100	78.441	ENSPCIG00000018938	SMG5	94	78.969	Phascolarctos_cinereus
ENSSPUG00000002260	SMG5	55	59.206	ENSPFOG00000010191	smg5	94	61.445	Poecilia_formosa
ENSSPUG00000002260	SMG5	55	58.770	ENSPLAG00000009332	smg5	94	61.330	Poecilia_latipinna
ENSSPUG00000002260	SMG5	100	63.554	ENSPMEG00000014105	smg5	94	64.565	Poecilia_mexicana
ENSSPUG00000002260	SMG5	100	76.900	ENSPPYG00000000723	SMG5	94	77.812	Pongo_abelii
ENSSPUG00000002260	SMG5	81	96.491	ENSPCAG00000008412	SMG5	74	96.491	Procavia_capensis
ENSSPUG00000002260	SMG5	100	77.305	ENSPCOG00000004741	SMG5	94	78.217	Propithecus_coquereli
ENSSPUG00000002260	SMG5	100	68.522	ENSPVAG00000016748	SMG5	94	69.200	Pteropus_vampyrus
ENSSPUG00000002260	SMG5	100	61.538	ENSPNYG00000013397	smg5	97	61.234	Pundamilia_nyererei
ENSSPUG00000002260	SMG5	100	62.631	ENSPNAG00000028363	smg5	94	62.440	Pygocentrus_nattereri
ENSSPUG00000002260	SMG5	100	76.052	ENSRNOG00000019590	Smg5	94	76.744	Rattus_norvegicus
ENSSPUG00000002260	SMG5	100	75.960	ENSRBIG00000027428	SMG5	94	77.250	Rhinopithecus_bieti
ENSSPUG00000002260	SMG5	100	75.859	ENSRROG00000030035	SMG5	94	77.149	Rhinopithecus_roxellana
ENSSPUG00000002260	SMG5	100	76.364	ENSSBOG00000033339	SMG5	94	77.273	Saimiri_boliviensis_boliviensis
ENSSPUG00000002260	SMG5	64	38.506	ENSSHAG00000000935	-	78	38.372	Sarcophilus_harrisii
ENSSPUG00000002260	SMG5	74	46.018	ENSSHAG00000009572	-	73	46.018	Sarcophilus_harrisii
ENSSPUG00000002260	SMG5	100	78.169	ENSSHAG00000014163	SMG5	96	78.571	Sarcophilus_harrisii
ENSSPUG00000002260	SMG5	74	39.053	ENSSHAG00000000561	-	80	39.053	Sarcophilus_harrisii
ENSSPUG00000002260	SMG5	100	65.161	ENSSFOG00015024175	smg5	93	64.854	Scleropages_formosus
ENSSPUG00000002260	SMG5	100	60.688	ENSSMAG00000013059	smg5	94	61.517	Scophthalmus_maximus
ENSSPUG00000002260	SMG5	100	61.127	ENSSDUG00000007122	smg5	94	61.397	Seriola_dumerili
ENSSPUG00000002260	SMG5	100	61.034	ENSSLDG00000011418	smg5	94	62.907	Seriola_lalandi_dorsalis
ENSSPUG00000002260	SMG5	92	65.766	ENSSARG00000012484	SMG5	88	78.058	Sorex_araneus
ENSSPUG00000002260	SMG5	100	64.363	ENSSPAG00000014266	smg5	93	63.952	Stegastes_partitus
ENSSPUG00000002260	SMG5	100	77.406	ENSSSCG00000006490	-	100	78.419	Sus_scrofa
ENSSPUG00000002260	SMG5	100	60.689	ENSSSCG00000039308	-	94	61.094	Sus_scrofa
ENSSPUG00000002260	SMG5	100	86.552	ENSTGUG00000003748	-	93	86.754	Taeniopygia_guttata
ENSSPUG00000002260	SMG5	100	63.809	ENSTRUG00000012580	smg5	94	63.519	Takifugu_rubripes
ENSSPUG00000002260	SMG5	100	64.012	ENSTNIG00000010303	smg5	94	63.518	Tetraodon_nigroviridis
ENSSPUG00000002260	SMG5	59	95.567	ENSTBEG00000002777	SMG5	58	95.567	Tupaia_belangeri
ENSSPUG00000002260	SMG5	100	75.887	ENSTTRG00000001401	SMG5	93	76.190	Tursiops_truncatus
ENSSPUG00000002260	SMG5	100	75.152	ENSUAMG00000013721	SMG5	93	75.657	Ursus_americanus
ENSSPUG00000002260	SMG5	100	71.400	ENSUMAG00000018041	SMG5	93	71.903	Ursus_maritimus
ENSSPUG00000002260	SMG5	97	71.803	ENSVPAG00000009446	SMG5	92	72.432	Vicugna_pacos
ENSSPUG00000002260	SMG5	100	76.190	ENSVVUG00000005887	SMG5	93	76.596	Vulpes_vulpes
ENSSPUG00000002260	SMG5	83	68.248	ENSXETG00000033791	SMG5	99	68.370	Xenopus_tropicalis
ENSSPUG00000002260	SMG5	75	68.108	ENSXCOG00000004379	smg5	88	68.681	Xiphophorus_couchianus
ENSSPUG00000002260	SMG5	100	62.675	ENSXMAG00000013499	smg5	93	63.383	Xiphophorus_maculatus