EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000003062 (Gene tree)
Gene ID: -
Gene Symbol: RIF1
Alias: FLJ10599|FLJ12870
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 137496 bases
Position: chrQEPC01012468.1:2090319-2227814
Accession: 23207
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000004696	Rif1_N	PF12231.8	4.2e-64	1	1
ENSSPUP00000004675	Rif1_N	PF12231.8	4.2e-64	1	1
ENSSPUP00000004667	Rif1_N	PF12231.8	4.3e-64	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000004985	RIF1-203	6486	-	ENSSPUP00000004696	2161 (aa)	-	-
ENSSPUT00000004962	RIF1-202	6540	-	ENSSPUP00000004675	2179 (aa)	-	-
ENSSPUT00000005001	RIF1-205	4775	-	ENSSPUP00000004712	1268 (aa)	-	-
ENSSPUT00000004954	RIF1-201	6627	-	ENSSPUP00000004667	2208 (aa)	-	-
ENSSPUT00000004999	RIF1-204	5000	-	ENSSPUP00000004710	1343 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000003062's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000003062's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000003062	RIF1	90	71.257	ENSG00000080345	RIF1	96	68.719	Homo_sapiens
ENSSPUG00000003062	RIF1	66	51.048	ENSAPOG00000011073	rif1	66	50.888	Acanthochromis_polyacanthus
ENSSPUG00000003062	RIF1	90	70.958	ENSAMEG00000008461	RIF1	83	70.958	Ailuropoda_melanoleuca
ENSSPUG00000003062	RIF1	52	52.013	ENSACIG00000017765	rif1	52	51.889	Amphilophus_citrinellus
ENSSPUG00000003062	RIF1	67	51.436	ENSAOCG00000017231	rif1	63	50.839	Amphiprion_ocellaris
ENSSPUG00000003062	RIF1	70	51.774	ENSATEG00000022887	rif1	62	56.190	Anabas_testudineus
ENSSPUG00000003062	RIF1	100	60.745	ENSAPLG00000007092	RIF1	95	76.520	Anas_platyrhynchos
ENSSPUG00000003062	RIF1	99	53.946	ENSACAG00000003714	RIF1	98	53.694	Anolis_carolinensis
ENSSPUG00000003062	RIF1	96	70.359	ENSANAG00000024840	RIF1	89	70.359	Aotus_nancymaae
ENSSPUG00000003062	RIF1	90	44.125	ENSAMXG00000010910	rif1	69	51.384	Astyanax_mexicanus
ENSSPUG00000003062	RIF1	89	69.192	ENSBTAG00000021020	RIF1	90	69.192	Bos_taurus
ENSSPUG00000003062	RIF1	95	70.030	ENSCJAG00000003138	RIF1	88	70.030	Callithrix_jacchus
ENSSPUG00000003062	RIF1	93	63.145	ENSCAFG00000005670	RIF1	83	63.145	Canis_familiaris
ENSSPUG00000003062	RIF1	90	71.257	ENSCAFG00020016401	RIF1	84	71.257	Canis_lupus_dingo
ENSSPUG00000003062	RIF1	99	60.291	ENSCHIG00000020327	RIF1	94	60.291	Capra_hircus
ENSSPUG00000003062	RIF1	94	71.171	ENSTSYG00000008861	RIF1	89	71.171	Carlito_syrichta
ENSSPUG00000003062	RIF1	81	58.793	ENSCAPG00000008957	RIF1	90	58.793	Cavia_aperea
ENSSPUG00000003062	RIF1	96	63.255	ENSCPOG00000037898	RIF1	89	63.255	Cavia_porcellus
ENSSPUG00000003062	RIF1	95	70.659	ENSCCAG00000024760	RIF1	88	70.659	Cebus_capucinus
ENSSPUG00000003062	RIF1	99	71.257	ENSCATG00000033353	RIF1	93	71.257	Cercocebus_atys
ENSSPUG00000003062	RIF1	88	67.961	ENSCLAG00000001517	RIF1	84	67.961	Chinchilla_lanigera
ENSSPUG00000003062	RIF1	99	70.958	ENSCSAG00000016089	RIF1	93	70.958	Chlorocebus_sabaeus
ENSSPUG00000003062	RIF1	96	72.189	ENSCHOG00000007187	RIF1	89	72.189	Choloepus_hoffmanni
ENSSPUG00000003062	RIF1	92	78.814	ENSCPBG00000025885	RIF1	96	78.579	Chrysemys_picta_bellii
ENSSPUG00000003062	RIF1	90	77.434	ENSCANG00000028962	RIF1	93	77.434	Colobus_angolensis_palliatus
ENSSPUG00000003062	RIF1	95	67.045	ENSCGRG00001024589	Rif1	88	67.045	Cricetulus_griseus_chok1gshd
ENSSPUG00000003062	RIF1	95	67.045	ENSCGRG00000010713	Rif1	90	67.045	Cricetulus_griseus_crigri
ENSSPUG00000003062	RIF1	51	51.385	ENSCSEG00000003945	rif1	51	51.134	Cynoglossus_semilaevis
ENSSPUG00000003062	RIF1	67	48.293	ENSCVAG00000022479	rif1	66	48.293	Cyprinodon_variegatus
ENSSPUG00000003062	RIF1	66	52.103	ENSDARG00000062650	rif1	64	51.340	Danio_rerio
ENSSPUG00000003062	RIF1	97	71.118	ENSDNOG00000011194	RIF1	86	71.118	Dasypus_novemcinctus
ENSSPUG00000003062	RIF1	81	58.819	ENSETEG00000012421	RIF1	73	59.435	Echinops_telfairi
ENSSPUG00000003062	RIF1	94	73.077	ENSEASG00005023434	RIF1	87	73.077	Equus_asinus_asinus
ENSSPUG00000003062	RIF1	95	67.147	ENSECAG00000012679	RIF1	86	67.147	Equus_caballus
ENSSPUG00000003062	RIF1	66	51.354	ENSELUG00000006826	rif1	54	51.069	Esox_lucius
ENSSPUG00000003062	RIF1	93	61.962	ENSFCAG00000029742	RIF1	85	61.962	Felis_catus
ENSSPUG00000003062	RIF1	94	55.168	ENSFALG00000013874	RIF1	99	55.338	Ficedula_albicollis
ENSSPUG00000003062	RIF1	99	68.678	ENSFDAG00000006538	RIF1	92	68.678	Fukomys_damarensis
ENSSPUG00000003062	RIF1	51	52.509	ENSFHEG00000013721	rif1	51	50.932	Fundulus_heteroclitus
ENSSPUG00000003062	RIF1	58	50.215	ENSGMOG00000003517	rif1	83	49.455	Gadus_morhua
ENSSPUG00000003062	RIF1	95	58.670	ENSGALG00000012484	RIF1	100	58.491	Gallus_gallus
ENSSPUG00000003062	RIF1	66	52.895	ENSGAFG00000017196	rif1	87	52.982	Gambusia_affinis
ENSSPUG00000003062	RIF1	63	56.612	ENSGACG00000008579	rif1	63	54.118	Gasterosteus_aculeatus
ENSSPUG00000003062	RIF1	99	78.049	ENSGAGG00000012595	RIF1	98	78.320	Gopherus_agassizii
ENSSPUG00000003062	RIF1	79	70.359	ENSGGOG00000040178	RIF1	81	70.455	Gorilla_gorilla
ENSSPUG00000003062	RIF1	69	52.286	ENSHBUG00000007125	rif1	62	54.393	Haplochromis_burtoni
ENSSPUG00000003062	RIF1	85	71.154	ENSHGLG00100009807	RIF1	82	71.154	Heterocephalus_glaber_male
ENSSPUG00000003062	RIF1	66	50.537	ENSHCOG00000015943	rif1	58	50.496	Hippocampus_comes
ENSSPUG00000003062	RIF1	68	53.135	ENSIPUG00000021703	rif1	82	52.887	Ictalurus_punctatus
ENSSPUG00000003062	RIF1	93	60.988	ENSSTOG00000020712	RIF1	85	60.988	Ictidomys_tridecemlineatus
ENSSPUG00000003062	RIF1	96	68.278	ENSJJAG00000023000	Rif1	96	68.278	Jaculus_jaculus
ENSSPUG00000003062	RIF1	71	50.501	ENSKMAG00000002852	rif1	64	52.087	Kryptolebias_marmoratus
ENSSPUG00000003062	RIF1	64	54.826	ENSLBEG00000023196	rif1	55	53.282	Labrus_bergylta
ENSSPUG00000003062	RIF1	99	50.733	ENSLACG00000005425	RIF1	98	50.524	Latimeria_chalumnae
ENSSPUG00000003062	RIF1	66	54.202	ENSLOCG00000002657	rif1	98	43.172	Lepisosteus_oculatus
ENSSPUG00000003062	RIF1	96	58.904	ENSLAFG00000009796	RIF1	89	57.763	Loxodonta_africana
ENSSPUG00000003062	RIF1	99	70.958	ENSMFAG00000032233	RIF1	93	70.958	Macaca_fascicularis
ENSSPUG00000003062	RIF1	99	70.659	ENSMMUG00000008611	RIF1	93	70.659	Macaca_mulatta
ENSSPUG00000003062	RIF1	99	70.958	ENSMNEG00000031616	RIF1	93	70.958	Macaca_nemestrina
ENSSPUG00000003062	RIF1	99	71.257	ENSMLEG00000042945	RIF1	93	71.257	Mandrillus_leucophaeus
ENSSPUG00000003062	RIF1	68	52.372	ENSMAMG00000001745	rif1	66	52.476	Mastacembelus_armatus
ENSSPUG00000003062	RIF1	73	52.189	ENSMZEG00005020920	rif1	75	52.062	Maylandia_zebra
ENSSPUG00000003062	RIF1	100	60.253	ENSMGAG00000012732	RIF1	99	59.887	Meleagris_gallopavo
ENSSPUG00000003062	RIF1	91	74.922	ENSMAUG00000013158	Rif1	87	74.922	Mesocricetus_auratus
ENSSPUG00000003062	RIF1	94	60.839	ENSMICG00000046127	RIF1	86	60.839	Microcebus_murinus
ENSSPUG00000003062	RIF1	95	66.856	ENSMOCG00000009381	Rif1	88	66.856	Microtus_ochrogaster
ENSSPUG00000003062	RIF1	66	50.299	ENSMMOG00000006519	rif1	63	49.620	Mola_mola
ENSSPUG00000003062	RIF1	96	72.156	ENSMODG00000003703	RIF1	91	71.856	Monodelphis_domestica
ENSSPUG00000003062	RIF1	63	52.498	ENSMALG00000016759	rif1	70	47.918	Monopterus_albus
ENSSPUG00000003062	RIF1	94	69.254	MGP_CAROLIEiJ_G0023555	Rif1	87	69.254	Mus_caroli
ENSSPUG00000003062	RIF1	94	69.643	ENSMUSG00000036202	Rif1	87	69.643	Mus_musculus
ENSSPUG00000003062	RIF1	99	61.728	MGP_PahariEiJ_G0025006	Rif1	90	61.728	Mus_pahari
ENSSPUG00000003062	RIF1	99	70.149	MGP_SPRETEiJ_G0024476	Rif1	95	70.149	Mus_spretus
ENSSPUG00000003062	RIF1	96	63.861	ENSMPUG00000000371	RIF1	88	63.861	Mustela_putorius_furo
ENSSPUG00000003062	RIF1	86	60.147	ENSMLUG00000003376	RIF1	88	60.147	Myotis_lucifugus
ENSSPUG00000003062	RIF1	97	68.376	ENSNGAG00000009268	Rif1	92	68.376	Nannospalax_galili
ENSSPUG00000003062	RIF1	73	50.256	ENSNBRG00000014257	rif1	63	52.762	Neolamprologus_brichardi
ENSSPUG00000003062	RIF1	97	56.025	ENSNLEG00000010955	RIF1	89	69.481	Nomascus_leucogenys
ENSSPUG00000003062	RIF1	81	70.721	ENSMEUG00000007601	-	83	70.721	Notamacropus_eugenii
ENSSPUG00000003062	RIF1	99	53.608	ENSODEG00000003950	RIF1	92	53.608	Octodon_degus
ENSSPUG00000003062	RIF1	74	52.393	ENSONIG00000013657	rif1	70	51.505	Oreochromis_niloticus
ENSSPUG00000003062	RIF1	81	71.770	ENSOANG00000006078	-	73	72.632	Ornithorhynchus_anatinus
ENSSPUG00000003062	RIF1	96	56.000	ENSOCUG00000017435	RIF1	89	55.959	Oryctolagus_cuniculus
ENSSPUG00000003062	RIF1	52	49.284	ENSORLG00020001302	rif1	52	49.832	Oryzias_latipes_hni
ENSSPUG00000003062	RIF1	69	49.705	ENSORLG00015000009	rif1	68	49.368	Oryzias_latipes_hsok
ENSSPUG00000003062	RIF1	65	50.338	ENSOMEG00000021513	rif1	66	49.873	Oryzias_melastigma
ENSSPUG00000003062	RIF1	93	60.794	ENSOGAG00000006141	RIF1	85	60.794	Otolemur_garnettii
ENSSPUG00000003062	RIF1	96	60.291	ENSOARG00000008930	RIF1	87	60.291	Ovis_aries
ENSSPUG00000003062	RIF1	90	71.257	ENSPPAG00000023754	RIF1	83	71.257	Pan_paniscus
ENSSPUG00000003062	RIF1	93	62.530	ENSPPRG00000003618	RIF1	85	62.530	Panthera_pardus
ENSSPUG00000003062	RIF1	93	62.530	ENSPTIG00000020652	RIF1	85	62.530	Panthera_tigris_altaica
ENSSPUG00000003062	RIF1	90	71.257	ENSPTRG00000012534	RIF1	83	71.257	Pan_troglodytes
ENSSPUG00000003062	RIF1	99	70.958	ENSPANG00000008525	RIF1	93	70.958	Papio_anubis
ENSSPUG00000003062	RIF1	66	54.569	ENSPKIG00000004267	rif1	71	53.776	Paramormyrops_kingsleyae
ENSSPUG00000003062	RIF1	69	49.088	ENSPMGG00000016141	rif1	77	49.088	Periophthalmus_magnuspinnatus
ENSSPUG00000003062	RIF1	96	68.182	ENSPEMG00000000446	Rif1	90	68.182	Peromyscus_maniculatus_bairdii
ENSSPUG00000003062	RIF1	99	54.937	ENSPCIG00000009185	RIF1	98	54.998	Phascolarctos_cinereus
ENSSPUG00000003062	RIF1	52	51.003	ENSPFOG00000017804	rif1	51	51.692	Poecilia_formosa
ENSSPUG00000003062	RIF1	67	49.100	ENSPLAG00000017945	rif1	67	49.872	Poecilia_latipinna
ENSSPUG00000003062	RIF1	68	51.050	ENSPREG00000018052	rif1	69	50.798	Poecilia_reticulata
ENSSPUG00000003062	RIF1	96	56.059	ENSPPYG00000012846	RIF1	89	56.343	Pongo_abelii
ENSSPUG00000003062	RIF1	94	60.599	ENSPCOG00000027888	RIF1	88	58.193	Propithecus_coquereli
ENSSPUG00000003062	RIF1	85	71.082	ENSPVAG00000014276	RIF1	79	71.082	Pteropus_vampyrus
ENSSPUG00000003062	RIF1	52	50.834	ENSPNYG00000012940	rif1	51	51.211	Pundamilia_nyererei
ENSSPUG00000003062	RIF1	66	53.688	ENSPNAG00000016685	rif1	63	53.688	Pygocentrus_nattereri
ENSSPUG00000003062	RIF1	94	61.614	ENSRNOG00000054901	Rif1	87	61.369	Rattus_norvegicus
ENSSPUG00000003062	RIF1	91	71.257	ENSRBIG00000003704	RIF1	88	71.257	Rhinopithecus_bieti
ENSSPUG00000003062	RIF1	91	71.257	ENSRROG00000028206	RIF1	88	71.257	Rhinopithecus_roxellana
ENSSPUG00000003062	RIF1	93	70.359	ENSSBOG00000029530	RIF1	88	70.359	Saimiri_boliviensis_boliviensis
ENSSPUG00000003062	RIF1	99	54.640	ENSSHAG00000018552	RIF1	100	53.621	Sarcophilus_harrisii
ENSSPUG00000003062	RIF1	69	52.304	ENSSFOG00015021539	rif1	72	51.506	Scleropages_formosus
ENSSPUG00000003062	RIF1	67	52.114	ENSSMAG00000011704	rif1	59	51.990	Scophthalmus_maximus
ENSSPUG00000003062	RIF1	51	52.885	ENSSDUG00000015632	rif1	65	52.682	Seriola_dumerili
ENSSPUG00000003062	RIF1	66	51.808	ENSSLDG00000019531	rif1	64	50.853	Seriola_lalandi_dorsalis
ENSSPUG00000003062	RIF1	51	61.072	ENSSPAG00000018359	rif1	73	61.072	Stegastes_partitus
ENSSPUG00000003062	RIF1	99	69.461	ENSSSCG00000016395	RIF1	92	69.461	Sus_scrofa
ENSSPUG00000003062	RIF1	67	50.967	ENSTRUG00000015808	rif1	62	53.434	Takifugu_rubripes
ENSSPUG00000003062	RIF1	67	49.851	ENSTNIG00000011538	rif1	66	49.251	Tetraodon_nigroviridis
ENSSPUG00000003062	RIF1	79	66.667	ENSTBEG00000016082	RIF1	72	66.667	Tupaia_belangeri
ENSSPUG00000003062	RIF1	99	67.318	ENSTTRG00000011190	RIF1	92	68.678	Tursiops_truncatus
ENSSPUG00000003062	RIF1	87	71.257	ENSUAMG00000026385	RIF1	88	71.257	Ursus_americanus
ENSSPUG00000003062	RIF1	96	71.257	ENSUMAG00000000337	RIF1	88	71.257	Ursus_maritimus
ENSSPUG00000003062	RIF1	90	68.563	ENSVPAG00000002162	RIF1	91	68.563	Vicugna_pacos
ENSSPUG00000003062	RIF1	90	70.674	ENSVVUG00000011293	RIF1	84	70.674	Vulpes_vulpes
ENSSPUG00000003062	RIF1	98	53.813	ENSXETG00000004530	rif1	90	53.813	Xenopus_tropicalis
ENSSPUG00000003062	RIF1	66	50.086	ENSXMAG00000000506	rif1	64	50.302	Xiphophorus_maculatus