EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPUG00000003549 (Gene tree)
Gene ID: -
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 11173 bases
Position: chrQEPC01010859.1:13168665-13179837
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000004594	zf-CCCH	PF00642.24	2.1e-20	1	2
ENSSPUP00000004594	zf-CCCH	PF00642.24	2.1e-20	2	2
ENSSPUP00000004594	zf-CCHC	PF00098.23	3.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000004874	CPSF4-201	1768	-	ENSSPUP00000004594	269 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000003549's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000003549's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPUG00000003549	CPSF4	50	32.168	ENSSPUG00000005878	-	76	32.168
ENSSPUG00000003549	CPSF4	96	60.853	ENSSPUG00000014803	-	97	60.853

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000003549	CPSF4	100	94.424	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSSPUG00000003549	CPSF4	67	72.527	ENSAPOG00000004921	cpsf4	100	72.527	Acanthochromis_polyacanthus
ENSSPUG00000003549	CPSF4	100	94.052	ENSAMEG00000006252	CPSF4	100	94.052	Ailuropoda_melanoleuca
ENSSPUG00000003549	CPSF4	100	78.810	ENSACIG00000009248	cpsf4	100	78.810	Amphilophus_citrinellus
ENSSPUG00000003549	CPSF4	100	83.333	ENSAOCG00000019616	cpsf4	100	83.333	Amphiprion_ocellaris
ENSSPUG00000003549	CPSF4	100	83.333	ENSAPEG00000011679	cpsf4	100	83.333	Amphiprion_percula
ENSSPUG00000003549	CPSF4	100	81.852	ENSATEG00000007010	cpsf4	100	81.852	Anabas_testudineus
ENSSPUG00000003549	CPSF4	100	94.424	ENSACAG00000012941	CPSF4	89	94.424	Anolis_carolinensis
ENSSPUG00000003549	CPSF4	100	94.424	ENSANAG00000021360	CPSF4	100	94.424	Aotus_nancymaae
ENSSPUG00000003549	CPSF4	100	82.593	ENSACLG00000010374	cpsf4	100	82.593	Astatotilapia_calliptera
ENSSPUG00000003549	CPSF4	100	84.871	ENSAMXG00000031647	cpsf4	100	86.347	Astyanax_mexicanus
ENSSPUG00000003549	CPSF4	100	83.271	ENSBTAG00000002090	CPSF4	100	85.130	Bos_taurus
ENSSPUG00000003549	CPSF4	100	94.424	ENSCJAG00000015826	CPSF4	100	94.424	Callithrix_jacchus
ENSSPUG00000003549	CPSF4	100	94.052	ENSCAFG00000015036	CPSF4	100	94.052	Canis_familiaris
ENSSPUG00000003549	CPSF4	100	87.732	ENSCAFG00020014462	CPSF4	100	87.732	Canis_lupus_dingo
ENSSPUG00000003549	CPSF4	100	94.052	ENSCHIG00000014313	CPSF4	100	94.052	Capra_hircus
ENSSPUG00000003549	CPSF4	100	78.148	ENSTSYG00000014604	-	100	78.148	Carlito_syrichta
ENSSPUG00000003549	CPSF4	100	84.758	ENSTSYG00000005712	-	100	86.245	Carlito_syrichta
ENSSPUG00000003549	CPSF4	89	78.838	ENSTSYG00000008195	-	99	78.800	Carlito_syrichta
ENSSPUG00000003549	CPSF4	81	94.037	ENSCAPG00000013881	CPSF4	87	94.037	Cavia_aperea
ENSSPUG00000003549	CPSF4	100	84.015	ENSCPOG00000001783	CPSF4	100	85.502	Cavia_porcellus
ENSSPUG00000003549	CPSF4	100	94.424	ENSCCAG00000028291	CPSF4	100	94.424	Cebus_capucinus
ENSSPUG00000003549	CPSF4	100	94.424	ENSCATG00000038440	CPSF4	100	94.424	Cercocebus_atys
ENSSPUG00000003549	CPSF4	100	94.052	ENSCLAG00000007050	CPSF4	100	94.052	Chinchilla_lanigera
ENSSPUG00000003549	CPSF4	100	94.424	ENSCSAG00000017795	CPSF4	100	94.424	Chlorocebus_sabaeus
ENSSPUG00000003549	CPSF4	61	81.818	ENSCPBG00000010269	-	99	81.818	Chrysemys_picta_bellii
ENSSPUG00000003549	CPSF4	80	96.296	ENSCPBG00000020869	CPSF4	100	96.296	Chrysemys_picta_bellii
ENSSPUG00000003549	CPSF4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSSPUG00000003549	CPSF4	96	53.381	ENSCSAVG00000011469	-	97	53.381	Ciona_savignyi
ENSSPUG00000003549	CPSF4	100	94.424	ENSCANG00000019384	CPSF4	100	94.424	Colobus_angolensis_palliatus
ENSSPUG00000003549	CPSF4	100	84.015	ENSCGRG00001024184	Cpsf4	100	85.502	Cricetulus_griseus_chok1gshd
ENSSPUG00000003549	CPSF4	100	94.052	ENSCGRG00000013892	Cpsf4	100	94.052	Cricetulus_griseus_crigri
ENSSPUG00000003549	CPSF4	100	82.963	ENSCSEG00000019055	cpsf4	100	82.963	Cynoglossus_semilaevis
ENSSPUG00000003549	CPSF4	100	82.963	ENSCVAG00000016528	cpsf4	100	82.963	Cyprinodon_variegatus
ENSSPUG00000003549	CPSF4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSSPUG00000003549	CPSF4	100	94.424	ENSDNOG00000006344	CPSF4	100	94.424	Dasypus_novemcinctus
ENSSPUG00000003549	CPSF4	81	94.009	ENSDORG00000000742	Cpsf4	100	94.009	Dipodomys_ordii
ENSSPUG00000003549	CPSF4	100	54.082	FBgn0015621	Clp	99	54.082	Drosophila_melanogaster
ENSSPUG00000003549	CPSF4	70	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSSPUG00000003549	CPSF4	99	65.918	ENSEBUG00000012552	cpsf4	98	65.918	Eptatretus_burgeri
ENSSPUG00000003549	CPSF4	100	84.015	ENSEASG00005002487	CPSF4	100	85.502	Equus_asinus_asinus
ENSSPUG00000003549	CPSF4	100	94.052	ENSECAG00000007525	CPSF4	100	94.052	Equus_caballus
ENSSPUG00000003549	CPSF4	63	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSSPUG00000003549	CPSF4	100	83.577	ENSELUG00000011481	cpsf4	100	83.577	Esox_lucius
ENSSPUG00000003549	CPSF4	100	94.052	ENSFCAG00000015070	CPSF4	100	94.052	Felis_catus
ENSSPUG00000003549	CPSF4	61	57.558	ENSFALG00000012906	-	100	57.558	Ficedula_albicollis
ENSSPUG00000003549	CPSF4	100	86.617	ENSFALG00000013799	CPSF4	100	86.617	Ficedula_albicollis
ENSSPUG00000003549	CPSF4	90	93.827	ENSFDAG00000014092	CPSF4	100	93.827	Fukomys_damarensis
ENSSPUG00000003549	CPSF4	100	81.852	ENSFHEG00000010880	cpsf4	100	81.852	Fundulus_heteroclitus
ENSSPUG00000003549	CPSF4	100	77.860	ENSGMOG00000002330	cpsf4	100	77.860	Gadus_morhua
ENSSPUG00000003549	CPSF4	100	87.361	ENSGALG00000004714	CPSF4	100	87.361	Gallus_gallus
ENSSPUG00000003549	CPSF4	99	38.021	ENSGALG00000004441	-	92	38.021	Gallus_gallus
ENSSPUG00000003549	CPSF4	100	82.222	ENSGAFG00000010580	cpsf4	100	82.222	Gambusia_affinis
ENSSPUG00000003549	CPSF4	100	76.015	ENSGACG00000007792	cpsf4	100	76.015	Gasterosteus_aculeatus
ENSSPUG00000003549	CPSF4	68	77.473	ENSGAGG00000020579	-	100	77.473	Gopherus_agassizii
ENSSPUG00000003549	CPSF4	100	95.911	ENSGAGG00000021835	CPSF4	100	95.911	Gopherus_agassizii
ENSSPUG00000003549	CPSF4	100	94.424	ENSGGOG00000015131	CPSF4	100	94.424	Gorilla_gorilla
ENSSPUG00000003549	CPSF4	100	82.593	ENSHBUG00000013699	cpsf4	100	82.593	Haplochromis_burtoni
ENSSPUG00000003549	CPSF4	100	92.251	ENSHGLG00000017150	CPSF4	100	92.251	Heterocephalus_glaber_female
ENSSPUG00000003549	CPSF4	66	67.232	ENSHGLG00100017302	-	91	66.839	Heterocephalus_glaber_male
ENSSPUG00000003549	CPSF4	87	90.678	ENSHGLG00100009215	-	100	90.678	Heterocephalus_glaber_male
ENSSPUG00000003549	CPSF4	100	79.259	ENSHCOG00000004397	cpsf4	100	79.259	Hippocampus_comes
ENSSPUG00000003549	CPSF4	100	83.764	ENSIPUG00000017147	cpsf4	100	83.764	Ictalurus_punctatus
ENSSPUG00000003549	CPSF4	100	94.052	ENSSTOG00000001688	CPSF4	100	94.052	Ictidomys_tridecemlineatus
ENSSPUG00000003549	CPSF4	100	94.052	ENSJJAG00000019426	Cpsf4	100	94.052	Jaculus_jaculus
ENSSPUG00000003549	CPSF4	100	80.741	ENSKMAG00000015642	cpsf4	100	80.741	Kryptolebias_marmoratus
ENSSPUG00000003549	CPSF4	100	88.519	ENSLACG00000010938	CPSF4	100	88.519	Latimeria_chalumnae
ENSSPUG00000003549	CPSF4	100	59.854	ENSLACG00000018470	-	100	59.854	Latimeria_chalumnae
ENSSPUG00000003549	CPSF4	100	89.591	ENSLOCG00000004814	cpsf4	100	89.591	Lepisosteus_oculatus
ENSSPUG00000003549	CPSF4	100	93.680	ENSLAFG00000000159	CPSF4	100	93.680	Loxodonta_africana
ENSSPUG00000003549	CPSF4	100	94.424	ENSMFAG00000001462	CPSF4	100	94.424	Macaca_fascicularis
ENSSPUG00000003549	CPSF4	100	94.424	ENSMMUG00000019191	CPSF4	100	94.424	Macaca_mulatta
ENSSPUG00000003549	CPSF4	100	94.424	ENSMNEG00000032306	CPSF4	100	94.424	Macaca_nemestrina
ENSSPUG00000003549	CPSF4	100	94.424	ENSMLEG00000034721	CPSF4	100	94.424	Mandrillus_leucophaeus
ENSSPUG00000003549	CPSF4	100	82.418	ENSMAMG00000006244	cpsf4	100	82.418	Mastacembelus_armatus
ENSSPUG00000003549	CPSF4	100	82.593	ENSMZEG00005007515	cpsf4	100	82.593	Maylandia_zebra
ENSSPUG00000003549	CPSF4	87	86.383	ENSMGAG00000004235	CPSF4	100	86.383	Meleagris_gallopavo
ENSSPUG00000003549	CPSF4	100	94.052	ENSMAUG00000021253	Cpsf4	100	94.052	Mesocricetus_auratus
ENSSPUG00000003549	CPSF4	100	94.052	ENSMICG00000017429	CPSF4	100	94.052	Microcebus_murinus
ENSSPUG00000003549	CPSF4	100	94.052	ENSMOCG00000014901	Cpsf4	100	94.052	Microtus_ochrogaster
ENSSPUG00000003549	CPSF4	100	82.222	ENSMMOG00000001813	cpsf4	100	82.222	Mola_mola
ENSSPUG00000003549	CPSF4	100	95.911	ENSMODG00000001367	CPSF4	100	95.911	Monodelphis_domestica
ENSSPUG00000003549	CPSF4	100	82.222	ENSMALG00000012611	cpsf4	100	82.222	Monopterus_albus
ENSSPUG00000003549	CPSF4	100	94.052	MGP_CAROLIEiJ_G0028012	Cpsf4	100	94.052	Mus_caroli
ENSSPUG00000003549	CPSF4	100	94.052	ENSMUSG00000029625	Cpsf4	100	94.052	Mus_musculus
ENSSPUG00000003549	CPSF4	100	94.052	MGP_PahariEiJ_G0024581	Cpsf4	100	94.052	Mus_pahari
ENSSPUG00000003549	CPSF4	100	94.052	MGP_SPRETEiJ_G0029013	Cpsf4	100	94.052	Mus_spretus
ENSSPUG00000003549	CPSF4	100	94.052	ENSMPUG00000016508	CPSF4	100	94.052	Mustela_putorius_furo
ENSSPUG00000003549	CPSF4	87	81.702	ENSMLUG00000010980	CPSF4	100	83.830	Myotis_lucifugus
ENSSPUG00000003549	CPSF4	100	94.052	ENSNGAG00000001567	Cpsf4	100	94.052	Nannospalax_galili
ENSSPUG00000003549	CPSF4	91	82.114	ENSNBRG00000003943	cpsf4	98	82.114	Neolamprologus_brichardi
ENSSPUG00000003549	CPSF4	100	91.450	ENSNLEG00000011074	CPSF4	100	91.450	Nomascus_leucogenys
ENSSPUG00000003549	CPSF4	100	95.911	ENSMEUG00000006955	CPSF4	100	95.911	Notamacropus_eugenii
ENSSPUG00000003549	CPSF4	100	93.680	ENSOPRG00000013663	CPSF4	100	93.680	Ochotona_princeps
ENSSPUG00000003549	CPSF4	99	70.943	ENSODEG00000018283	-	91	72.453	Octodon_degus
ENSSPUG00000003549	CPSF4	100	71.062	ENSODEG00000009779	-	100	71.062	Octodon_degus
ENSSPUG00000003549	CPSF4	100	94.052	ENSODEG00000011181	-	100	94.052	Octodon_degus
ENSSPUG00000003549	CPSF4	100	82.593	ENSONIG00000008495	cpsf4	100	82.593	Oreochromis_niloticus
ENSSPUG00000003549	CPSF4	87	94.894	ENSOANG00000007729	CPSF4	100	94.894	Ornithorhynchus_anatinus
ENSSPUG00000003549	CPSF4	100	53.763	ENSOANG00000009568	-	100	53.763	Ornithorhynchus_anatinus
ENSSPUG00000003549	CPSF4	100	93.680	ENSOCUG00000002437	CPSF4	70	93.680	Oryctolagus_cuniculus
ENSSPUG00000003549	CPSF4	100	82.963	ENSORLG00000022798	cpsf4	100	82.963	Oryzias_latipes
ENSSPUG00000003549	CPSF4	100	82.963	ENSORLG00020008548	cpsf4	100	82.963	Oryzias_latipes_hni
ENSSPUG00000003549	CPSF4	100	82.593	ENSORLG00015019575	cpsf4	100	82.593	Oryzias_latipes_hsok
ENSSPUG00000003549	CPSF4	100	80.952	ENSOMEG00000005176	cpsf4	100	80.952	Oryzias_melastigma
ENSSPUG00000003549	CPSF4	100	94.052	ENSOGAG00000010884	CPSF4	100	94.052	Otolemur_garnettii
ENSSPUG00000003549	CPSF4	100	83.883	ENSOARG00000018668	CPSF4	100	83.883	Ovis_aries
ENSSPUG00000003549	CPSF4	100	94.424	ENSPPAG00000043355	CPSF4	100	94.424	Pan_paniscus
ENSSPUG00000003549	CPSF4	100	94.052	ENSPPRG00000003134	CPSF4	100	94.052	Panthera_pardus
ENSSPUG00000003549	CPSF4	90	94.628	ENSPTIG00000005604	CPSF4	90	94.628	Panthera_tigris_altaica
ENSSPUG00000003549	CPSF4	100	94.424	ENSPTRG00000019453	CPSF4	100	94.424	Pan_troglodytes
ENSSPUG00000003549	CPSF4	100	94.424	ENSPANG00000023123	CPSF4	100	94.424	Papio_anubis
ENSSPUG00000003549	CPSF4	100	85.036	ENSPKIG00000014278	cpsf4	100	85.036	Paramormyrops_kingsleyae
ENSSPUG00000003549	CPSF4	81	57.798	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSSPUG00000003549	CPSF4	80	95.833	ENSPSIG00000011229	CPSF4	100	95.833	Pelodiscus_sinensis
ENSSPUG00000003549	CPSF4	100	73.606	ENSPMGG00000017735	cpsf4	100	73.606	Periophthalmus_magnuspinnatus
ENSSPUG00000003549	CPSF4	100	94.052	ENSPEMG00000004508	Cpsf4	100	94.052	Peromyscus_maniculatus_bairdii
ENSSPUG00000003549	CPSF4	100	95.911	ENSPCIG00000024776	CPSF4	100	95.911	Phascolarctos_cinereus
ENSSPUG00000003549	CPSF4	100	82.222	ENSPFOG00000014912	cpsf4	100	82.222	Poecilia_formosa
ENSSPUG00000003549	CPSF4	100	75.093	ENSPLAG00000009599	cpsf4	100	75.093	Poecilia_latipinna
ENSSPUG00000003549	CPSF4	100	82.222	ENSPMEG00000009790	cpsf4	100	82.222	Poecilia_mexicana
ENSSPUG00000003549	CPSF4	100	81.481	ENSPREG00000018166	cpsf4	100	81.481	Poecilia_reticulata
ENSSPUG00000003549	CPSF4	87	94.444	ENSPPYG00000017378	CPSF4	100	94.444	Pongo_abelii
ENSSPUG00000003549	CPSF4	100	93.309	ENSPCAG00000001892	CPSF4	100	93.309	Procavia_capensis
ENSSPUG00000003549	CPSF4	100	94.052	ENSPCOG00000012771	CPSF4	100	94.052	Propithecus_coquereli
ENSSPUG00000003549	CPSF4	100	87.361	ENSPVAG00000007531	CPSF4	100	87.361	Pteropus_vampyrus
ENSSPUG00000003549	CPSF4	100	82.593	ENSPNYG00000018559	cpsf4	100	82.593	Pundamilia_nyererei
ENSSPUG00000003549	CPSF4	100	85.556	ENSPNAG00000003736	cpsf4	100	85.556	Pygocentrus_nattereri
ENSSPUG00000003549	CPSF4	100	83.271	ENSRNOG00000000985	Cpsf4	100	85.130	Rattus_norvegicus
ENSSPUG00000003549	CPSF4	87	94.872	ENSRBIG00000033886	CPSF4	100	94.872	Rhinopithecus_bieti
ENSSPUG00000003549	CPSF4	100	84.387	ENSRROG00000040431	CPSF4	100	85.874	Rhinopithecus_roxellana
ENSSPUG00000003549	CPSF4	100	94.424	ENSSBOG00000020493	CPSF4	100	94.424	Saimiri_boliviensis_boliviensis
ENSSPUG00000003549	CPSF4	100	95.911	ENSSHAG00000011533	CPSF4	100	95.911	Sarcophilus_harrisii
ENSSPUG00000003549	CPSF4	100	86.594	ENSSFOG00015007883	cpsf4	100	87.319	Scleropages_formosus
ENSSPUG00000003549	CPSF4	100	78.439	ENSSMAG00000006374	cpsf4	100	78.439	Scophthalmus_maximus
ENSSPUG00000003549	CPSF4	100	81.852	ENSSDUG00000018887	cpsf4	100	81.852	Seriola_dumerili
ENSSPUG00000003549	CPSF4	100	82.222	ENSSLDG00000019078	cpsf4	100	82.222	Seriola_lalandi_dorsalis
ENSSPUG00000003549	CPSF4	87	94.444	ENSSARG00000012416	CPSF4	100	94.444	Sorex_araneus
ENSSPUG00000003549	CPSF4	100	79.182	ENSSPAG00000006174	cpsf4	100	79.182	Stegastes_partitus
ENSSPUG00000003549	CPSF4	100	84.015	ENSSSCG00000026896	CPSF4	100	85.502	Sus_scrofa
ENSSPUG00000003549	CPSF4	100	85.609	ENSTGUG00000007552	CPSF4	100	85.609	Taeniopygia_guttata
ENSSPUG00000003549	CPSF4	100	79.630	ENSTRUG00000024220	cpsf4	100	79.630	Takifugu_rubripes
ENSSPUG00000003549	CPSF4	100	79.336	ENSTNIG00000006265	cpsf4	100	80.812	Tetraodon_nigroviridis
ENSSPUG00000003549	CPSF4	87	85.043	ENSTBEG00000011406	CPSF4	100	85.043	Tupaia_belangeri
ENSSPUG00000003549	CPSF4	100	75.093	ENSTTRG00000003007	CPSF4	100	75.093	Tursiops_truncatus
ENSSPUG00000003549	CPSF4	92	81.781	ENSUAMG00000008051	CPSF4	85	83.806	Ursus_americanus
ENSSPUG00000003549	CPSF4	100	83.271	ENSUMAG00000009474	CPSF4	100	85.130	Ursus_maritimus
ENSSPUG00000003549	CPSF4	100	83.643	ENSVVUG00000008824	CPSF4	100	85.502	Vulpes_vulpes
ENSSPUG00000003549	CPSF4	100	87.814	ENSXETG00000009892	cpsf4	100	87.814	Xenopus_tropicalis
ENSSPUG00000003549	CPSF4	99	60.448	ENSXETG00000004641	cpsf4l	99	60.448	Xenopus_tropicalis
ENSSPUG00000003549	CPSF4	100	81.852	ENSXCOG00000016040	cpsf4	100	81.852	Xiphophorus_couchianus
ENSSPUG00000003549	CPSF4	100	82.222	ENSXMAG00000024670	cpsf4	100	82.222	Xiphophorus_maculatus