EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPUG00000004167 (Gene tree)
Gene ID: -
Gene Symbol: R3HDM1
Alias: KIAA0029|R3HDM
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 92249 bases
Position: chrQEPC01001524.1:6116202-6208450
Accession: 9757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000005656	R3H	PF01424.22	1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000006037	R3HDM1-202	1194	-	ENSSPUP00000005676	397 (aa)	-	-
ENSSPUT00000006014	R3HDM1-201	3276	-	ENSSPUP00000005656	1091 (aa)	-	-
ENSSPUT00000006049	R3HDM1-203	2711	-	ENSSPUP00000005688	680 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000004167's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000004167's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPUG00000004167	R3HDM1	90	56.763	ENSSPUG00000014132	R3HDM2	95	57.039
ENSSPUG00000004167	R3HDM1	59	50.720	ENSSPUG00000007365	ARPP21	94	50.485

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000004167	R3HDM1	100	80.307	ENSG00000048991	R3HDM1	88	95.946	Homo_sapiens
ENSSPUG00000004167	R3HDM1	89	48.052	ENSAPOG00000020850	r3hdm1	97	47.124	Acanthochromis_polyacanthus
ENSSPUG00000004167	R3HDM1	100	80.488	ENSAMEG00000014886	R3HDM1	100	80.759	Ailuropoda_melanoleuca
ENSSPUG00000004167	R3HDM1	88	47.677	ENSAOCG00000005192	r3hdm1	99	46.704	Amphiprion_ocellaris
ENSSPUG00000004167	R3HDM1	88	46.398	ENSAPEG00000016108	r3hdm1	99	45.665	Amphiprion_percula
ENSSPUG00000004167	R3HDM1	88	46.044	ENSATEG00000000232	r3hdm1	99	45.629	Anabas_testudineus
ENSSPUG00000004167	R3HDM1	100	87.945	ENSAPLG00000015231	R3HDM1	100	87.945	Anas_platyrhynchos
ENSSPUG00000004167	R3HDM1	100	84.934	ENSACAG00000001676	R3HDM1	100	85.463	Anolis_carolinensis
ENSSPUG00000004167	R3HDM1	100	80.505	ENSANAG00000035334	R3HDM1	100	80.505	Aotus_nancymaae
ENSSPUG00000004167	R3HDM1	88	46.577	ENSACLG00000027282	r3hdm1	99	45.333	Astatotilapia_calliptera
ENSSPUG00000004167	R3HDM1	92	71.770	ENSAMXG00000012861	R3HDM1	100	62.279	Astyanax_mexicanus
ENSSPUG00000004167	R3HDM1	100	56.059	ENSAMXG00000003536	r3hdm1	100	62.877	Astyanax_mexicanus
ENSSPUG00000004167	R3HDM1	100	78.257	ENSBTAG00000013302	R3HDM1	100	78.433	Bos_taurus
ENSSPUG00000004167	R3HDM1	100	80.289	ENSCJAG00000011718	R3HDM1	100	80.380	Callithrix_jacchus
ENSSPUG00000004167	R3HDM1	100	80.668	ENSCAFG00000005075	R3HDM1	100	80.939	Canis_familiaris
ENSSPUG00000004167	R3HDM1	100	80.668	ENSCAFG00020016119	R3HDM1	100	80.939	Canis_lupus_dingo
ENSSPUG00000004167	R3HDM1	100	80.636	ENSCHIG00000020851	R3HDM1	100	80.909	Capra_hircus
ENSSPUG00000004167	R3HDM1	100	76.007	ENSCPOG00000012784	R3HDM1	100	75.919	Cavia_porcellus
ENSSPUG00000004167	R3HDM1	100	79.946	ENSCCAG00000027199	R3HDM1	100	79.946	Cebus_capucinus
ENSSPUG00000004167	R3HDM1	97	86.822	ENSCATG00000023642	R3HDM1	100	79.946	Cercocebus_atys
ENSSPUG00000004167	R3HDM1	100	75.986	ENSCLAG00000007962	R3HDM1	100	77.815	Chinchilla_lanigera
ENSSPUG00000004167	R3HDM1	100	77.739	ENSCSAG00000016356	R3HDM1	100	77.651	Chlorocebus_sabaeus
ENSSPUG00000004167	R3HDM1	87	69.357	ENSCHOG00000013638	R3HDM1	91	69.220	Choloepus_hoffmanni
ENSSPUG00000004167	R3HDM1	88	89.666	ENSCPBG00000009645	R3HDM1	100	93.382	Chrysemys_picta_bellii
ENSSPUG00000004167	R3HDM1	100	80.144	ENSCANG00000034748	R3HDM1	100	80.054	Colobus_angolensis_palliatus
ENSSPUG00000004167	R3HDM1	99	77.045	ENSCGRG00001012357	R3hdm1	97	77.045	Cricetulus_griseus_chok1gshd
ENSSPUG00000004167	R3HDM1	99	79.257	ENSCGRG00000012080	R3hdm1	100	80.795	Cricetulus_griseus_crigri
ENSSPUG00000004167	R3HDM1	88	44.612	ENSCSEG00000008944	r3hdm1	99	45.463	Cynoglossus_semilaevis
ENSSPUG00000004167	R3HDM1	88	47.476	ENSCVAG00000007582	r3hdm1	99	47.236	Cyprinodon_variegatus
ENSSPUG00000004167	R3HDM1	62	36.936	ENSDARG00000061081	arpp21	92	36.364	Danio_rerio
ENSSPUG00000004167	R3HDM1	100	76.715	ENSDNOG00000000771	R3HDM1	100	76.986	Dasypus_novemcinctus
ENSSPUG00000004167	R3HDM1	100	71.442	ENSETEG00000013606	R3HDM1	100	71.985	Echinops_telfairi
ENSSPUG00000004167	R3HDM1	60	44.156	ENSEBUG00000014746	arpp21	97	44.654	Eptatretus_burgeri
ENSSPUG00000004167	R3HDM1	100	81.142	ENSEASG00005007392	R3HDM1	100	81.324	Equus_asinus_asinus
ENSSPUG00000004167	R3HDM1	100	80.995	ENSECAG00000019114	R3HDM1	100	81.176	Equus_caballus
ENSSPUG00000004167	R3HDM1	87	76.838	ENSEEUG00000012589	R3HDM1	84	78.119	Erinaceus_europaeus
ENSSPUG00000004167	R3HDM1	93	53.412	ENSELUG00000014413	r3hdm1	100	53.973	Esox_lucius
ENSSPUG00000004167	R3HDM1	94	56.343	ENSELUG00000004909	R3HDM1	99	56.348	Esox_lucius
ENSSPUG00000004167	R3HDM1	100	80.598	ENSFCAG00000027113	R3HDM1	100	80.870	Felis_catus
ENSSPUG00000004167	R3HDM1	100	76.182	ENSFDAG00000016478	R3HDM1	95	85.221	Fukomys_damarensis
ENSSPUG00000004167	R3HDM1	88	45.438	ENSFHEG00000018713	r3hdm1	100	46.859	Fundulus_heteroclitus
ENSSPUG00000004167	R3HDM1	58	63.991	ENSGMOG00000006042	-	82	59.590	Gadus_morhua
ENSSPUG00000004167	R3HDM1	83	86.319	ENSGALG00000012246	R3HDM1	99	86.275	Gallus_gallus
ENSSPUG00000004167	R3HDM1	78	48.531	ENSGAFG00000006203	r3hdm1	94	48.534	Gambusia_affinis
ENSSPUG00000004167	R3HDM1	86	47.348	ENSGACG00000014925	r3hdm1	99	47.150	Gasterosteus_aculeatus
ENSSPUG00000004167	R3HDM1	100	88.564	ENSGAGG00000007840	R3HDM1	100	88.381	Gopherus_agassizii
ENSSPUG00000004167	R3HDM1	100	80.397	ENSGGOG00000008156	R3HDM1	100	80.307	Gorilla_gorilla
ENSSPUG00000004167	R3HDM1	100	76.450	ENSHGLG00000015718	R3HDM1	95	85.029	Heterocephalus_glaber_female
ENSSPUG00000004167	R3HDM1	100	76.274	ENSHGLG00100003184	-	100	78.477	Heterocephalus_glaber_male
ENSSPUG00000004167	R3HDM1	100	59.347	ENSHGLG00100015374	-	100	59.528	Heterocephalus_glaber_male
ENSSPUG00000004167	R3HDM1	79	43.279	ENSHCOG00000013366	r3hdm1	88	58.105	Hippocampus_comes
ENSSPUG00000004167	R3HDM1	81	65.952	ENSIPUG00000001676	R3HDM1	99	59.104	Ictalurus_punctatus
ENSSPUG00000004167	R3HDM1	85	67.470	ENSIPUG00000013629	r3hdm1	95	69.062	Ictalurus_punctatus
ENSSPUG00000004167	R3HDM1	100	79.946	ENSSTOG00000007572	R3HDM1	95	86.564	Ictidomys_tridecemlineatus
ENSSPUG00000004167	R3HDM1	95	76.789	ENSLACG00000005334	R3HDM1	100	76.972	Latimeria_chalumnae
ENSSPUG00000004167	R3HDM1	100	69.659	ENSLOCG00000001641	r3hdm1	100	69.452	Lepisosteus_oculatus
ENSSPUG00000004167	R3HDM1	100	78.314	ENSLAFG00000009065	R3HDM1	100	78.402	Loxodonta_africana
ENSSPUG00000004167	R3HDM1	100	80.307	ENSMFAG00000030331	R3HDM1	100	80.217	Macaca_fascicularis
ENSSPUG00000004167	R3HDM1	100	80.217	ENSMMUG00000009844	R3HDM1	100	80.126	Macaca_mulatta
ENSSPUG00000004167	R3HDM1	100	80.217	ENSMNEG00000027793	R3HDM1	100	80.126	Macaca_nemestrina
ENSSPUG00000004167	R3HDM1	100	80.307	ENSMLEG00000043189	R3HDM1	100	80.217	Mandrillus_leucophaeus
ENSSPUG00000004167	R3HDM1	88	49.229	ENSMAMG00000004532	r3hdm1	99	47.909	Mastacembelus_armatus
ENSSPUG00000004167	R3HDM1	88	48.987	ENSMZEG00005003157	r3hdm1	99	47.810	Maylandia_zebra
ENSSPUG00000004167	R3HDM1	100	87.088	ENSMGAG00000012461	R3HDM1	100	87.088	Meleagris_gallopavo
ENSSPUG00000004167	R3HDM1	100	77.010	ENSMAUG00000010315	R3hdm1	100	80.795	Mesocricetus_auratus
ENSSPUG00000004167	R3HDM1	100	79.170	ENSMICG00000005900	-	100	79.351	Microcebus_murinus
ENSSPUG00000004167	R3HDM1	50	84.375	ENSMOCG00000019833	-	95	85.605	Microtus_ochrogaster
ENSSPUG00000004167	R3HDM1	90	78.428	ENSMODG00000000923	R3HDM1	97	78.428	Monodelphis_domestica
ENSSPUG00000004167	R3HDM1	99	46.494	ENSMALG00000009000	r3hdm1	100	45.197	Monopterus_albus
ENSSPUG00000004167	R3HDM1	100	76.646	MGP_CAROLIEiJ_G0014543	R3hdm1	95	85.413	Mus_caroli
ENSSPUG00000004167	R3HDM1	100	76.383	ENSMUSG00000056211	R3hdm1	95	85.413	Mus_musculus
ENSSPUG00000004167	R3HDM1	100	76.295	MGP_PahariEiJ_G0027779	R3hdm1	95	85.221	Mus_pahari
ENSSPUG00000004167	R3HDM1	100	76.471	MGP_SPRETEiJ_G0015350	R3hdm1	95	85.605	Mus_spretus
ENSSPUG00000004167	R3HDM1	100	80.271	ENSMPUG00000002412	R3HDM1	100	80.543	Mustela_putorius_furo
ENSSPUG00000004167	R3HDM1	100	79.279	ENSMLUG00000013824	R3HDM1	100	79.369	Myotis_lucifugus
ENSSPUG00000004167	R3HDM1	100	80.307	ENSNLEG00000008622	R3HDM1	100	80.217	Nomascus_leucogenys
ENSSPUG00000004167	R3HDM1	89	72.222	ENSMEUG00000011784	R3HDM1	99	72.222	Notamacropus_eugenii
ENSSPUG00000004167	R3HDM1	100	75.175	ENSODEG00000008607	R3HDM1	100	78.808	Octodon_degus
ENSSPUG00000004167	R3HDM1	95	47.653	ENSONIG00000012017	r3hdm1	99	46.655	Oreochromis_niloticus
ENSSPUG00000004167	R3HDM1	100	81.694	ENSOANG00000007987	R3HDM1	100	81.967	Ornithorhynchus_anatinus
ENSSPUG00000004167	R3HDM1	89	79.065	ENSOCUG00000017366	R3HDM1	98	79.167	Oryctolagus_cuniculus
ENSSPUG00000004167	R3HDM1	88	44.553	ENSORLG00000004297	r3hdm1	99	45.033	Oryzias_latipes
ENSSPUG00000004167	R3HDM1	88	47.296	ENSORLG00015017355	r3hdm1	99	46.961	Oryzias_latipes_hsok
ENSSPUG00000004167	R3HDM1	100	79.710	ENSOGAG00000003136	R3HDM1	100	79.620	Otolemur_garnettii
ENSSPUG00000004167	R3HDM1	100	80.528	ENSOARG00000010788	R3HDM1	100	80.801	Ovis_aries
ENSSPUG00000004167	R3HDM1	100	80.162	ENSPPAG00000027858	R3HDM1	100	80.072	Pan_paniscus
ENSSPUG00000004167	R3HDM1	100	80.508	ENSPPRG00000002626	R3HDM1	100	80.780	Panthera_pardus
ENSSPUG00000004167	R3HDM1	100	80.508	ENSPTIG00000016581	R3HDM1	100	80.780	Panthera_tigris_altaica
ENSSPUG00000004167	R3HDM1	100	80.162	ENSPTRG00000012494	R3HDM1	100	80.072	Pan_troglodytes
ENSSPUG00000004167	R3HDM1	100	80.307	ENSPANG00000026448	R3HDM1	100	80.217	Papio_anubis
ENSSPUG00000004167	R3HDM1	99	58.757	ENSPKIG00000004328	r3hdm1	96	58.932	Paramormyrops_kingsleyae
ENSSPUG00000004167	R3HDM1	100	87.832	ENSPSIG00000012915	R3HDM1	100	87.832	Pelodiscus_sinensis
ENSSPUG00000004167	R3HDM1	100	77.349	ENSPEMG00000015187	R3hdm1	100	80.464	Peromyscus_maniculatus_bairdii
ENSSPUG00000004167	R3HDM1	87	44.337	ENSPMAG00000003369	-	99	43.865	Petromyzon_marinus
ENSSPUG00000004167	R3HDM1	100	83.379	ENSPCIG00000002491	R3HDM1	100	83.651	Phascolarctos_cinereus
ENSSPUG00000004167	R3HDM1	88	46.392	ENSPFOG00000015036	r3hdm1	99	45.794	Poecilia_formosa
ENSSPUG00000004167	R3HDM1	88	45.728	ENSPLAG00000018042	r3hdm1	99	45.208	Poecilia_latipinna
ENSSPUG00000004167	R3HDM1	88	46.161	ENSPMEG00000023947	r3hdm1	99	45.349	Poecilia_mexicana
ENSSPUG00000004167	R3HDM1	88	47.813	ENSPREG00000007902	r3hdm1	89	60.047	Poecilia_reticulata
ENSSPUG00000004167	R3HDM1	100	79.513	ENSPPYG00000012815	R3HDM1	100	79.422	Pongo_abelii
ENSSPUG00000004167	R3HDM1	100	68.966	ENSPCAG00000006208	R3HDM1	100	69.238	Procavia_capensis
ENSSPUG00000004167	R3HDM1	100	77.547	ENSPCOG00000012698	R3HDM1	100	77.457	Propithecus_coquereli
ENSSPUG00000004167	R3HDM1	100	71.931	ENSPVAG00000006098	R3HDM1	100	72.292	Pteropus_vampyrus
ENSSPUG00000004167	R3HDM1	100	57.206	ENSPNAG00000013952	r3hdm1	100	57.180	Pygocentrus_nattereri
ENSSPUG00000004167	R3HDM1	57	48.753	ENSPNAG00000004162	arpp21	91	48.684	Pygocentrus_nattereri
ENSSPUG00000004167	R3HDM1	100	75.680	ENSRNOG00000004099	R3hdm1	100	75.680	Rattus_norvegicus
ENSSPUG00000004167	R3HDM1	100	78.990	ENSRBIG00000033317	R3HDM1	100	80.390	Rhinopithecus_bieti
ENSSPUG00000004167	R3HDM1	100	80.144	ENSRROG00000034534	R3HDM1	100	80.054	Rhinopithecus_roxellana
ENSSPUG00000004167	R3HDM1	100	80.307	ENSSBOG00000020389	R3HDM1	100	80.307	Saimiri_boliviensis_boliviensis
ENSSPUG00000004167	R3HDM1	100	84.307	ENSSHAG00000016999	R3HDM1	100	84.307	Sarcophilus_harrisii
ENSSPUG00000004167	R3HDM1	93	70.353	ENSSFOG00015014134	r3hdm1	100	71.186	Scleropages_formosus
ENSSPUG00000004167	R3HDM1	100	58.834	ENSSFOG00015019851	-	100	58.438	Scleropages_formosus
ENSSPUG00000004167	R3HDM1	99	44.330	ENSSMAG00000001669	r3hdm1	99	43.415	Scophthalmus_maximus
ENSSPUG00000004167	R3HDM1	88	47.719	ENSSDUG00000010749	r3hdm1	99	46.610	Seriola_dumerili
ENSSPUG00000004167	R3HDM1	99	47.186	ENSSLDG00000004499	r3hdm1	99	46.193	Seriola_lalandi_dorsalis
ENSSPUG00000004167	R3HDM1	70	73.841	ENSSARG00000000352	-	69	73.841	Sorex_araneus
ENSSPUG00000004167	R3HDM1	88	49.523	ENSSPAG00000004648	r3hdm1	99	49.365	Stegastes_partitus
ENSSPUG00000004167	R3HDM1	100	80.616	ENSSSCG00000015692	R3HDM1	100	80.797	Sus_scrofa
ENSSPUG00000004167	R3HDM1	100	80.822	ENSTGUG00000011750	R3HDM1	100	81.187	Taeniopygia_guttata
ENSSPUG00000004167	R3HDM1	80	47.046	ENSTRUG00000011654	r3hdm1	93	46.652	Takifugu_rubripes
ENSSPUG00000004167	R3HDM1	86	47.299	ENSTNIG00000010362	r3hdm1	99	46.505	Tetraodon_nigroviridis
ENSSPUG00000004167	R3HDM1	100	75.658	ENSTTRG00000003935	R3HDM1	100	75.749	Tursiops_truncatus
ENSSPUG00000004167	R3HDM1	70	82.134	ENSUAMG00000024806	R3HDM1	95	85.605	Ursus_americanus
ENSSPUG00000004167	R3HDM1	100	76.449	ENSUMAG00000005552	R3HDM1	100	76.721	Ursus_maritimus
ENSSPUG00000004167	R3HDM1	93	76.891	ENSVPAG00000007333	R3HDM1	93	77.098	Vicugna_pacos
ENSSPUG00000004167	R3HDM1	100	78.490	ENSVVUG00000006457	R3HDM1	100	78.753	Vulpes_vulpes
ENSSPUG00000004167	R3HDM1	89	69.857	ENSXETG00000019330	r3hdm1	100	69.959	Xenopus_tropicalis
ENSSPUG00000004167	R3HDM1	67	49.223	ENSXCOG00000017448	r3hdm1	94	49.548	Xiphophorus_couchianus
ENSSPUG00000004167	R3HDM1	88	46.168	ENSXMAG00000007885	r3hdm1	99	46.262	Xiphophorus_maculatus