EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPUG00000004215 (Gene tree)
Gene ID: -
Gene Symbol: POLR1A
Alias: DKFZP586M0122|FLJ21915|RPA1|RPO1-4
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Minus strand
Length: 82605 bases
Position: chrQEPC01005526.1:263292-345896
Accession: 17264
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000005997	RNA_pol_Rpb1_5	PF04998.17	2.7e-90	1	1
ENSSPUP00000006058	RNA_pol_Rpb1_5	PF04998.17	2.7e-90	1	1
ENSSPUP00000006019	RNA_pol_Rpb1_5	PF04998.17	2.8e-90	1	1
ENSSPUP00000006042	RNA_pol_Rpb1_5	PF04998.17	2.8e-90	1	1
ENSSPUP00000005946	RNA_pol_Rpb1_5	PF04998.17	4.6e-90	1	1
ENSSPUP00000005997	RNA_pol_Rpb1_4	PF05000.17	3.8e-25	1	1
ENSSPUP00000006019	RNA_pol_Rpb1_4	PF05000.17	5.1e-25	1	1
ENSSPUP00000006058	RNA_pol_Rpb1_4	PF05000.17	5.3e-25	1	1
ENSSPUP00000006042	RNA_pol_Rpb1_4	PF05000.17	5.5e-25	1	1
ENSSPUP00000005946	RNA_pol_Rpb1_4	PF05000.17	5.5e-25	1	1
ENSSPUP00000006019	RNA_pol_Rpb1_2	PF00623.20	1.1e-69	1	1
ENSSPUP00000006058	RNA_pol_Rpb1_2	PF00623.20	1.2e-69	1	1
ENSSPUP00000006042	RNA_pol_Rpb1_2	PF00623.20	1.2e-69	1	1
ENSSPUP00000005997	RNA_pol_Rpb1_2	PF00623.20	1.2e-69	1	1
ENSSPUP00000005946	RNA_pol_Rpb1_2	PF00623.20	1.3e-69	1	1
ENSSPUP00000005997	RNA_pol_Rpb1_3	PF04983.18	1.3e-36	1	1
ENSSPUP00000006042	RNA_pol_Rpb1_3	PF04983.18	1.4e-36	1	1
ENSSPUP00000005946	RNA_pol_Rpb1_3	PF04983.18	1.5e-36	1	1
ENSSPUP00000006058	RNA_pol_Rpb1_3	PF04983.18	1.5e-36	1	1
ENSSPUP00000006019	RNA_pol_Rpb1_3	PF04983.18	1.5e-36	1	1
ENSSPUP00000005997	RNA_pol_Rpb1_1	PF04997.12	7.7e-24	1	1
ENSSPUP00000005946	RNA_pol_Rpb1_1	PF04997.12	1.1e-23	1	1
ENSSPUP00000006019	RNA_pol_Rpb1_1	PF04997.12	1.5e-23	1	1
ENSSPUP00000006042	RNA_pol_Rpb1_1	PF04997.12	2.3e-23	1	1
ENSSPUP00000006058	RNA_pol_Rpb1_1	PF04997.12	3.5e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000006447	POLR1A-205	4743	-	ENSSPUP00000006058	1580 (aa)	-	-
ENSSPUT00000006379	POLR1A-202	4827	-	ENSSPUP00000005997	1608 (aa)	-	-
ENSSPUT00000006327	POLR1A-201	5055	-	ENSSPUP00000005946	1684 (aa)	-	-
ENSSPUT00000006403	POLR1A-203	4809	-	ENSSPUP00000006019	1602 (aa)	-	-
ENSSPUT00000006429	POLR1A-204	4746	-	ENSSPUP00000006042	1581 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000004215's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000004215's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPUG00000004215	POLR1A	83	36.054	ENSSPUG00000013209	POLR3A	91	36.054

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000004215	POLR1A	98	78.462	ENSG00000068654	POLR1A	95	77.949	Homo_sapiens
ENSSPUG00000004215	POLR1A	72	69.165	ENSAPOG00000017945	polr1a	99	69.251	Acanthochromis_polyacanthus
ENSSPUG00000004215	POLR1A	98	78.974	ENSAMEG00000005807	POLR1A	100	76.915	Ailuropoda_melanoleuca
ENSSPUG00000004215	POLR1A	100	63.267	ENSACIG00000022147	polr1a	100	66.387	Amphilophus_citrinellus
ENSSPUG00000004215	POLR1A	98	74.359	ENSAOCG00000017336	polr1a	95	74.359	Amphiprion_ocellaris
ENSSPUG00000004215	POLR1A	98	73.000	ENSAPEG00000016105	polr1a	98	72.414	Amphiprion_percula
ENSSPUG00000004215	POLR1A	98	72.500	ENSATEG00000016773	polr1a	95	72.500	Anabas_testudineus
ENSSPUG00000004215	POLR1A	83	81.443	ENSAPLG00000013871	POLR1A	99	75.528	Anas_platyrhynchos
ENSSPUG00000004215	POLR1A	99	79.487	ENSACAG00000012141	POLR1A	93	79.487	Anolis_carolinensis
ENSSPUG00000004215	POLR1A	98	77.949	ENSANAG00000033927	POLR1A	94	77.949	Aotus_nancymaae
ENSSPUG00000004215	POLR1A	98	72.500	ENSACLG00000020541	polr1a	95	72.500	Astatotilapia_calliptera
ENSSPUG00000004215	POLR1A	98	78.462	ENSBTAG00000006481	POLR1A	100	70.732	Bos_taurus
ENSSPUG00000004215	POLR1A	96	48.438	WBGene00012999	rpoa-1	91	48.438	Caenorhabditis_elegans
ENSSPUG00000004215	POLR1A	98	78.462	ENSCJAG00000019547	POLR1A	94	78.462	Callithrix_jacchus
ENSSPUG00000004215	POLR1A	98	78.974	ENSCAFG00000007613	POLR1A	94	78.974	Canis_familiaris
ENSSPUG00000004215	POLR1A	98	78.974	ENSCAFG00020014752	POLR1A	95	79.167	Canis_lupus_dingo
ENSSPUG00000004215	POLR1A	97	80.571	ENSCHIG00000018204	POLR1A	94	80.571	Capra_hircus
ENSSPUG00000004215	POLR1A	100	74.702	ENSTSYG00000002761	POLR1A	94	76.410	Carlito_syrichta
ENSSPUG00000004215	POLR1A	95	76.923	ENSCAPG00000010132	POLR1A	94	76.923	Cavia_aperea
ENSSPUG00000004215	POLR1A	98	76.923	ENSCPOG00000012350	POLR1A	95	76.923	Cavia_porcellus
ENSSPUG00000004215	POLR1A	98	77.949	ENSCCAG00000019839	POLR1A	94	77.949	Cebus_capucinus
ENSSPUG00000004215	POLR1A	98	78.974	ENSCATG00000029786	POLR1A	94	78.974	Cercocebus_atys
ENSSPUG00000004215	POLR1A	98	77.436	ENSCLAG00000005187	POLR1A	95	77.436	Chinchilla_lanigera
ENSSPUG00000004215	POLR1A	98	78.974	ENSCSAG00000016251	POLR1A	94	78.974	Chlorocebus_sabaeus
ENSSPUG00000004215	POLR1A	52	87.059	ENSCHOG00000003766	-	84	87.059	Choloepus_hoffmanni
ENSSPUG00000004215	POLR1A	99	84.536	ENSCPBG00000001115	POLR1A	99	79.094	Chrysemys_picta_bellii
ENSSPUG00000004215	POLR1A	98	52.020	ENSCSAVG00000007184	-	93	55.177	Ciona_savignyi
ENSSPUG00000004215	POLR1A	98	78.974	ENSCANG00000031785	POLR1A	94	78.974	Colobus_angolensis_palliatus
ENSSPUG00000004215	POLR1A	98	76.410	ENSCGRG00001006651	Polr1a	94	76.410	Cricetulus_griseus_chok1gshd
ENSSPUG00000004215	POLR1A	56	76.410	ENSCGRG00000010834	Polr1a	100	68.217	Cricetulus_griseus_crigri
ENSSPUG00000004215	POLR1A	100	65.966	ENSCSEG00000020190	polr1a	93	74.000	Cynoglossus_semilaevis
ENSSPUG00000004215	POLR1A	98	70.833	ENSCVAG00000020941	polr1a	94	70.833	Cyprinodon_variegatus
ENSSPUG00000004215	POLR1A	98	72.821	ENSDARG00000098375	polr1a	100	64.982	Danio_rerio
ENSSPUG00000004215	POLR1A	98	71.868	ENSDNOG00000010829	POLR1A	100	66.802	Dasypus_novemcinctus
ENSSPUG00000004215	POLR1A	98	77.949	ENSDORG00000008298	Polr1a	95	77.949	Dipodomys_ordii
ENSSPUG00000004215	POLR1A	95	50.000	FBgn0019938	RpI1	91	50.000	Drosophila_melanogaster
ENSSPUG00000004215	POLR1A	71	90.625	ENSETEG00000000412	-	72	90.625	Echinops_telfairi
ENSSPUG00000004215	POLR1A	79	62.791	ENSEBUG00000005667	-	93	62.791	Eptatretus_burgeri
ENSSPUG00000004215	POLR1A	98	76.923	ENSEASG00005001625	POLR1A	94	76.923	Equus_asinus_asinus
ENSSPUG00000004215	POLR1A	98	77.949	ENSECAG00000030510	-	99	77.122	Equus_caballus
ENSSPUG00000004215	POLR1A	98	77.949	ENSECAG00000010092	POLR1A	99	77.122	Equus_caballus
ENSSPUG00000004215	POLR1A	98	77.949	ENSECAG00000036306	-	99	77.122	Equus_caballus
ENSSPUG00000004215	POLR1A	81	82.282	ENSEEUG00000000676	POLR1A	81	82.282	Erinaceus_europaeus
ENSSPUG00000004215	POLR1A	98	72.500	ENSELUG00000012769	polr1a	99	65.283	Esox_lucius
ENSSPUG00000004215	POLR1A	98	78.974	ENSFCAG00000008966	POLR1A	94	78.974	Felis_catus
ENSSPUG00000004215	POLR1A	96	79.381	ENSFALG00000010082	POLR1A	94	79.381	Ficedula_albicollis
ENSSPUG00000004215	POLR1A	98	77.949	ENSFDAG00000013726	POLR1A	95	77.949	Fukomys_damarensis
ENSSPUG00000004215	POLR1A	97	70.681	ENSFHEG00000005996	polr1a	93	70.681	Fundulus_heteroclitus
ENSSPUG00000004215	POLR1A	98	70.000	ENSGMOG00000002230	polr1a	95	70.000	Gadus_morhua
ENSSPUG00000004215	POLR1A	89	76.952	ENSGALG00000038160	-	99	72.020	Gallus_gallus
ENSSPUG00000004215	POLR1A	98	73.438	ENSGAFG00000015266	polr1a	94	73.438	Gambusia_affinis
ENSSPUG00000004215	POLR1A	99	71.000	ENSGACG00000018791	polr1a	94	71.000	Gasterosteus_aculeatus
ENSSPUG00000004215	POLR1A	88	83.232	ENSGAGG00000004984	-	96	85.223	Gopherus_agassizii
ENSSPUG00000004215	POLR1A	98	79.487	ENSGGOG00000001788	POLR1A	94	79.487	Gorilla_gorilla
ENSSPUG00000004215	POLR1A	90	72.500	ENSHBUG00000020021	polr1a	94	72.500	Haplochromis_burtoni
ENSSPUG00000004215	POLR1A	98	76.923	ENSHGLG00000006334	POLR1A	100	70.455	Heterocephalus_glaber_female
ENSSPUG00000004215	POLR1A	98	76.923	ENSHGLG00100006614	POLR1A	100	70.250	Heterocephalus_glaber_male
ENSSPUG00000004215	POLR1A	98	71.282	ENSHCOG00000003345	polr1a	92	71.282	Hippocampus_comes
ENSSPUG00000004215	POLR1A	98	73.846	ENSIPUG00000013174	polr1a	92	73.846	Ictalurus_punctatus
ENSSPUG00000004215	POLR1A	98	76.923	ENSSTOG00000012580	POLR1A	100	69.598	Ictidomys_tridecemlineatus
ENSSPUG00000004215	POLR1A	99	75.445	ENSJJAG00000013113	Polr1a	95	75.409	Jaculus_jaculus
ENSSPUG00000004215	POLR1A	98	73.846	ENSKMAG00000007399	polr1a	92	73.846	Kryptolebias_marmoratus
ENSSPUG00000004215	POLR1A	93	73.500	ENSLBEG00000015401	polr1a	94	73.500	Labrus_bergylta
ENSSPUG00000004215	POLR1A	56	75.410	ENSLACG00000003218	polr1a	99	75.490	Latimeria_chalumnae
ENSSPUG00000004215	POLR1A	98	75.897	ENSLOCG00000010881	polr1a	92	75.897	Lepisosteus_oculatus
ENSSPUG00000004215	POLR1A	98	80.000	ENSLAFG00000014948	POLR1A	95	80.000	Loxodonta_africana
ENSSPUG00000004215	POLR1A	98	78.974	ENSMFAG00000046097	POLR1A	94	78.974	Macaca_fascicularis
ENSSPUG00000004215	POLR1A	98	78.974	ENSMMUG00000015815	POLR1A	94	78.974	Macaca_mulatta
ENSSPUG00000004215	POLR1A	98	78.974	ENSMNEG00000043313	POLR1A	94	78.974	Macaca_nemestrina
ENSSPUG00000004215	POLR1A	98	78.974	ENSMLEG00000042428	POLR1A	94	78.974	Mandrillus_leucophaeus
ENSSPUG00000004215	POLR1A	98	70.500	ENSMAMG00000016565	polr1a	100	64.930	Mastacembelus_armatus
ENSSPUG00000004215	POLR1A	99	72.500	ENSMZEG00005004915	polr1a	95	72.500	Maylandia_zebra
ENSSPUG00000004215	POLR1A	98	77.071	ENSMGAG00000013111	POLR1A	94	77.037	Meleagris_gallopavo
ENSSPUG00000004215	POLR1A	89	76.923	ENSMAUG00000008497	Polr1a	99	70.450	Mesocricetus_auratus
ENSSPUG00000004215	POLR1A	98	77.949	ENSMICG00000000757	POLR1A	94	77.949	Microcebus_murinus
ENSSPUG00000004215	POLR1A	94	82.171	ENSMOCG00000000122	Polr1a	92	82.171	Microtus_ochrogaster
ENSSPUG00000004215	POLR1A	98	71.500	ENSMMOG00000010216	polr1a	95	71.500	Mola_mola
ENSSPUG00000004215	POLR1A	99	73.665	ENSMODG00000009335	POLR1A	93	74.620	Monodelphis_domestica
ENSSPUG00000004215	POLR1A	98	74.000	ENSMALG00000013363	polr1a	95	74.000	Monopterus_albus
ENSSPUG00000004215	POLR1A	98	76.410	MGP_CAROLIEiJ_G0028494	Polr1a	95	76.410	Mus_caroli
ENSSPUG00000004215	POLR1A	98	76.410	ENSMUSG00000049553	Polr1a	95	76.410	Mus_musculus
ENSSPUG00000004215	POLR1A	98	77.436	MGP_PahariEiJ_G0022230	Polr1a	95	77.436	Mus_pahari
ENSSPUG00000004215	POLR1A	98	76.410	MGP_SPRETEiJ_G0029499	Polr1a	93	76.410	Mus_spretus
ENSSPUG00000004215	POLR1A	98	78.462	ENSMPUG00000009135	POLR1A	94	78.462	Mustela_putorius_furo
ENSSPUG00000004215	POLR1A	98	80.000	ENSMLUG00000015723	POLR1A	94	80.000	Myotis_lucifugus
ENSSPUG00000004215	POLR1A	98	76.923	ENSNGAG00000017907	Polr1a	95	76.923	Nannospalax_galili
ENSSPUG00000004215	POLR1A	98	72.500	ENSNBRG00000000519	polr1a	95	72.500	Neolamprologus_brichardi
ENSSPUG00000004215	POLR1A	97	74.029	ENSNLEG00000002264	POLR1A	100	68.764	Nomascus_leucogenys
ENSSPUG00000004215	POLR1A	77	85.039	ENSMEUG00000011665	-	75	85.039	Notamacropus_eugenii
ENSSPUG00000004215	POLR1A	95	76.596	ENSOPRG00000008269	POLR1A	93	76.596	Ochotona_princeps
ENSSPUG00000004215	POLR1A	98	76.410	ENSODEG00000003542	POLR1A	95	76.410	Octodon_degus
ENSSPUG00000004215	POLR1A	97	72.000	ENSONIG00000015895	polr1a	100	64.925	Oreochromis_niloticus
ENSSPUG00000004215	POLR1A	98	77.949	ENSOCUG00000010138	POLR1A	95	77.949	Oryctolagus_cuniculus
ENSSPUG00000004215	POLR1A	98	72.821	ENSORLG00000008753	polr1a	94	72.821	Oryzias_latipes
ENSSPUG00000004215	POLR1A	99	72.821	ENSORLG00020020726	polr1a	91	72.821	Oryzias_latipes_hni
ENSSPUG00000004215	POLR1A	95	77.660	ENSORLG00015016071	polr1a	98	77.660	Oryzias_latipes_hsok
ENSSPUG00000004215	POLR1A	98	76.923	ENSOGAG00000004031	POLR1A	94	76.923	Otolemur_garnettii
ENSSPUG00000004215	POLR1A	98	80.000	ENSOARG00000020601	POLR1A	94	80.000	Ovis_aries
ENSSPUG00000004215	POLR1A	98	78.974	ENSPPAG00000042450	POLR1A	100	71.031	Pan_paniscus
ENSSPUG00000004215	POLR1A	98	77.949	ENSPPRG00000006702	POLR1A	94	77.949	Panthera_pardus
ENSSPUG00000004215	POLR1A	98	77.949	ENSPTIG00000018783	POLR1A	94	77.949	Panthera_tigris_altaica
ENSSPUG00000004215	POLR1A	98	79.487	ENSPTRG00000012147	POLR1A	100	70.973	Pan_troglodytes
ENSSPUG00000004215	POLR1A	98	78.974	ENSPANG00000025908	POLR1A	94	78.974	Papio_anubis
ENSSPUG00000004215	POLR1A	95	73.793	ENSPKIG00000005468	polr1a	99	73.793	Paramormyrops_kingsleyae
ENSSPUG00000004215	POLR1A	59	83.505	ENSPSIG00000009321	-	92	83.505	Pelodiscus_sinensis
ENSSPUG00000004215	POLR1A	57	70.220	ENSPMGG00000009718	polr1a	95	70.220	Periophthalmus_magnuspinnatus
ENSSPUG00000004215	POLR1A	98	76.923	ENSPEMG00000022224	Polr1a	100	70.035	Peromyscus_maniculatus_bairdii
ENSSPUG00000004215	POLR1A	93	74.735	ENSPCIG00000004222	POLR1A	99	70.912	Phascolarctos_cinereus
ENSSPUG00000004215	POLR1A	98	70.769	ENSPFOG00000005025	polr1a	95	70.769	Poecilia_formosa
ENSSPUG00000004215	POLR1A	98	70.769	ENSPLAG00000021389	polr1a	100	63.886	Poecilia_latipinna
ENSSPUG00000004215	POLR1A	98	71.282	ENSPMEG00000006463	polr1a	100	62.566	Poecilia_mexicana
ENSSPUG00000004215	POLR1A	97	74.457	ENSPREG00000002389	polr1a	91	74.457	Poecilia_reticulata
ENSSPUG00000004215	POLR1A	98	79.592	ENSPPYG00000012217	POLR1A	94	79.592	Pongo_abelii
ENSSPUG00000004215	POLR1A	87	69.612	ENSPCAG00000011582	POLR1A	87	69.612	Procavia_capensis
ENSSPUG00000004215	POLR1A	98	77.949	ENSPCOG00000026987	POLR1A	94	77.949	Propithecus_coquereli
ENSSPUG00000004215	POLR1A	92	78.462	ENSPVAG00000012674	POLR1A	89	78.462	Pteropus_vampyrus
ENSSPUG00000004215	POLR1A	99	72.500	ENSPNYG00000000026	polr1a	95	72.500	Pundamilia_nyererei
ENSSPUG00000004215	POLR1A	98	73.846	ENSPNAG00000019223	polr1a	92	73.846	Pygocentrus_nattereri
ENSSPUG00000004215	POLR1A	98	75.897	ENSRNOG00000009545	Polr1a	100	70.145	Rattus_norvegicus
ENSSPUG00000004215	POLR1A	98	78.974	ENSRBIG00000028335	POLR1A	94	78.974	Rhinopithecus_bieti
ENSSPUG00000004215	POLR1A	98	78.974	ENSRROG00000031473	POLR1A	94	78.974	Rhinopithecus_roxellana
ENSSPUG00000004215	POLR1A	99	36.416	YOR341W	RPA190	99	36.322	Saccharomyces_cerevisiae
ENSSPUG00000004215	POLR1A	98	77.949	ENSSBOG00000030262	POLR1A	94	77.949	Saimiri_boliviensis_boliviensis
ENSSPUG00000004215	POLR1A	98	81.538	ENSSHAG00000014739	POLR1A	92	81.538	Sarcophilus_harrisii
ENSSPUG00000004215	POLR1A	99	72.000	ENSSFOG00015019716	polr1a	100	67.016	Scleropages_formosus
ENSSPUG00000004215	POLR1A	98	73.000	ENSSMAG00000014342	polr1a	95	73.000	Scophthalmus_maximus
ENSSPUG00000004215	POLR1A	98	74.000	ENSSDUG00000014631	polr1a	95	74.000	Seriola_dumerili
ENSSPUG00000004215	POLR1A	99	74.000	ENSSLDG00000024095	polr1a	95	74.000	Seriola_lalandi_dorsalis
ENSSPUG00000004215	POLR1A	71	97.561	ENSSARG00000003136	-	71	97.561	Sorex_araneus
ENSSPUG00000004215	POLR1A	67	71.709	ENSSPAG00000016341	polr1a	95	70.146	Stegastes_partitus
ENSSPUG00000004215	POLR1A	86	73.987	ENSSSCG00000008226	POLR1A	99	71.899	Sus_scrofa
ENSSPUG00000004215	POLR1A	96	78.462	ENSTGUG00000010704	POLR1A	100	73.634	Taeniopygia_guttata
ENSSPUG00000004215	POLR1A	98	69.500	ENSTRUG00000002210	polr1a	95	69.500	Takifugu_rubripes
ENSSPUG00000004215	POLR1A	97	66.265	ENSTNIG00000010116	polr1a	98	60.423	Tetraodon_nigroviridis
ENSSPUG00000004215	POLR1A	69	85.841	ENSTBEG00000008646	POLR1A	70	85.841	Tupaia_belangeri
ENSSPUG00000004215	POLR1A	98	78.974	ENSTTRG00000008597	POLR1A	94	78.974	Tursiops_truncatus
ENSSPUG00000004215	POLR1A	65	78.974	ENSUAMG00000012158	-	87	78.974	Ursus_americanus
ENSSPUG00000004215	POLR1A	99	78.462	ENSUMAG00000006700	POLR1A	97	76.364	Ursus_maritimus
ENSSPUG00000004215	POLR1A	98	78.974	ENSVVUG00000001245	POLR1A	94	78.974	Vulpes_vulpes
ENSSPUG00000004215	POLR1A	98	71.282	ENSXETG00000001952	polr1a	95	71.282	Xenopus_tropicalis
ENSSPUG00000004215	POLR1A	98	71.795	ENSXMAG00000004032	polr1a	100	64.219	Xiphophorus_maculatus