EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPUG00000004233 (Gene tree)
Gene ID: -
Gene Symbol: PABPC1L
Alias: C20orf119|PABPC1L1|dJ1069P2.3|ePAB
Full Name: poly(A) binding protein cytoplasmic 1 like
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 31721 bases
Position: chrQEPC01011641.1:78852-110572
Accession: 15797
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000005531	PABP	PF00658.18	7.4e-30	1	1
ENSSPUP00000005531	RRM_1	PF00076.22	1.7e-87	1	4
ENSSPUP00000005531	RRM_1	PF00076.22	1.7e-87	2	4
ENSSPUP00000005531	RRM_1	PF00076.22	1.7e-87	3	4
ENSSPUP00000005531	RRM_1	PF00076.22	1.7e-87	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000005882	PABPC1L-201	1908	-	ENSSPUP00000005531	635 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000004233's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000004233's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPUG00000004233	PABPC1L	74	63.231	ENSSPUG00000018259	-	91	63.231
ENSSPUG00000004233	PABPC1L	61	33.735	ENSSPUG00000001246	ELAVL2	92	33.735
ENSSPUG00000004233	PABPC1L	55	31.126	ENSSPUG00000002412	TIAL1	90	31.126
ENSSPUG00000004233	PABPC1L	57	38.095	ENSSPUG00000001028	SF3B4	52	35.484
ENSSPUG00000004233	PABPC1L	99	72.799	ENSSPUG00000018267	PABPC1	98	72.799
ENSSPUG00000004233	PABPC1L	56	43.056	ENSSPUG00000012393	RBM39	86	43.056
ENSSPUG00000004233	PABPC1L	99	68.487	ENSSPUG00000003204	PABPC4	99	69.291

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000004233	PABPC1L	98	73.997	ENSG00000101104	PABPC1L	98	81.173	Homo_sapiens
ENSSPUG00000004233	PABPC1L	99	69.365	ENSAPOG00000010842	pabpc1l	99	69.365	Acanthochromis_polyacanthus
ENSSPUG00000004233	PABPC1L	98	67.982	ENSAMEG00000004099	PABPC1L	99	68.934	Ailuropoda_melanoleuca
ENSSPUG00000004233	PABPC1L	99	71.270	ENSACIG00000021004	-	99	75.822	Amphilophus_citrinellus
ENSSPUG00000004233	PABPC1L	99	70.458	ENSAOCG00000006167	-	99	70.458	Amphiprion_ocellaris
ENSSPUG00000004233	PABPC1L	99	73.516	ENSAPEG00000010558	-	99	82.160	Amphiprion_percula
ENSSPUG00000004233	PABPC1L	99	71.949	ENSATEG00000007428	pabpc1l	99	72.742	Anabas_testudineus
ENSSPUG00000004233	PABPC1L	97	84.219	ENSAPLG00000008415	PABPC1L	99	84.051	Anas_platyrhynchos
ENSSPUG00000004233	PABPC1L	100	85.354	ENSACAG00000011841	PABPC1L	100	85.354	Anolis_carolinensis
ENSSPUG00000004233	PABPC1L	98	72.873	ENSANAG00000026826	PABPC1L	99	72.873	Aotus_nancymaae
ENSSPUG00000004233	PABPC1L	99	72.512	ENSACLG00000024791	pabpc1l	99	72.512	Astatotilapia_calliptera
ENSSPUG00000004233	PABPC1L	99	75.316	ENSAMXG00000013552	pabpc1l	99	75.316	Astyanax_mexicanus
ENSSPUG00000004233	PABPC1L	57	92.262	ENSBTAG00000055300	-	100	92.262	Bos_taurus
ENSSPUG00000004233	PABPC1L	64	68.345	ENSBTAG00000016849	PABPC1L	85	68.345	Bos_taurus
ENSSPUG00000004233	PABPC1L	98	73.355	ENSCJAG00000017628	PABPC1L	99	73.355	Callithrix_jacchus
ENSSPUG00000004233	PABPC1L	58	79.885	ENSCJAG00000038506	-	100	79.885	Callithrix_jacchus
ENSSPUG00000004233	PABPC1L	98	68.111	ENSCAFG00000009573	PABPC1L	99	68.111	Canis_familiaris
ENSSPUG00000004233	PABPC1L	98	72.930	ENSCAFG00020013828	PABPC1L	99	72.930	Canis_lupus_dingo
ENSSPUG00000004233	PABPC1L	97	72.638	ENSCHIG00000025759	PABPC1L	91	72.638	Capra_hircus
ENSSPUG00000004233	PABPC1L	98	73.034	ENSTSYG00000006645	PABPC1L	99	73.034	Carlito_syrichta
ENSSPUG00000004233	PABPC1L	97	67.207	ENSCAPG00000014519	PABPC1L	99	67.207	Cavia_aperea
ENSSPUG00000004233	PABPC1L	98	70.288	ENSCPOG00000013633	PABPC1L	99	70.288	Cavia_porcellus
ENSSPUG00000004233	PABPC1L	98	72.873	ENSCCAG00000023338	PABPC1L	99	72.873	Cebus_capucinus
ENSSPUG00000004233	PABPC1L	98	73.997	ENSCATG00000034065	PABPC1L	99	73.997	Cercocebus_atys
ENSSPUG00000004233	PABPC1L	98	69.952	ENSCLAG00000005298	PABPC1L	99	69.952	Chinchilla_lanigera
ENSSPUG00000004233	PABPC1L	98	73.836	ENSCSAG00000014242	PABPC1L	99	73.836	Chlorocebus_sabaeus
ENSSPUG00000004233	PABPC1L	70	94.570	ENSCPBG00000017755	-	99	94.570	Chrysemys_picta_bellii
ENSSPUG00000004233	PABPC1L	55	82.090	ENSCPBG00000007810	-	94	82.090	Chrysemys_picta_bellii
ENSSPUG00000004233	PABPC1L	98	50.688	ENSCING00000002796	-	99	50.588	Ciona_intestinalis
ENSSPUG00000004233	PABPC1L	98	70.332	ENSCSAVG00000004246	-	96	70.332	Ciona_savignyi
ENSSPUG00000004233	PABPC1L	96	61.224	ENSCSAVG00000003102	-	100	82.993	Ciona_savignyi
ENSSPUG00000004233	PABPC1L	98	69.620	ENSCANG00000037530	PABPC1L	99	69.620	Colobus_angolensis_palliatus
ENSSPUG00000004233	PABPC1L	98	66.667	ENSCGRG00001021938	Pabpc1l	99	66.667	Cricetulus_griseus_chok1gshd
ENSSPUG00000004233	PABPC1L	98	66.667	ENSCGRG00000007946	Pabpc1l	99	66.667	Cricetulus_griseus_crigri
ENSSPUG00000004233	PABPC1L	84	75.532	ENSCSEG00000021295	pabpc1l	94	75.532	Cynoglossus_semilaevis
ENSSPUG00000004233	PABPC1L	99	71.632	ENSCVAG00000015943	-	86	90.840	Cyprinodon_variegatus
ENSSPUG00000004233	PABPC1L	99	74.010	ENSDARG00000002597	pabpc1l	88	90.000	Danio_rerio
ENSSPUG00000004233	PABPC1L	98	75.762	ENSDNOG00000048450	PABPC1L	99	75.762	Dasypus_novemcinctus
ENSSPUG00000004233	PABPC1L	98	70.626	ENSDORG00000001067	Pabpc1l	99	70.626	Dipodomys_ordii
ENSSPUG00000004233	PABPC1L	95	81.707	ENSETEG00000009969	PABPC1L	72	81.707	Echinops_telfairi
ENSSPUG00000004233	PABPC1L	57	91.071	ENSEASG00005023408	-	100	91.071	Equus_asinus_asinus
ENSSPUG00000004233	PABPC1L	50	80.745	ENSEASG00005023407	-	65	80.745	Equus_asinus_asinus
ENSSPUG00000004233	PABPC1L	64	75.000	ENSECAG00000040139	-	81	75.000	Equus_caballus
ENSSPUG00000004233	PABPC1L	98	71.270	ENSEEUG00000005978	PABPC1L	99	71.270	Erinaceus_europaeus
ENSSPUG00000004233	PABPC1L	99	75.079	ENSELUG00000001811	pabpc1l	98	79.372	Esox_lucius
ENSSPUG00000004233	PABPC1L	98	73.440	ENSFCAG00000011692	PABPC1L	99	73.440	Felis_catus
ENSSPUG00000004233	PABPC1L	89	80.342	ENSFALG00000005372	PABPC1L	98	80.513	Ficedula_albicollis
ENSSPUG00000004233	PABPC1L	98	68.750	ENSFDAG00000008291	PABPC1L	99	68.750	Fukomys_damarensis
ENSSPUG00000004233	PABPC1L	99	72.425	ENSFHEG00000003398	pabpc1l	99	72.425	Fundulus_heteroclitus
ENSSPUG00000004233	PABPC1L	99	73.248	ENSGMOG00000004437	pabpc1l	99	73.248	Gadus_morhua
ENSSPUG00000004233	PABPC1L	84	87.755	ENSGALG00000004123	PABPC1L	98	92.494	Gallus_gallus
ENSSPUG00000004233	PABPC1L	99	68.263	ENSGAFG00000021057	pabpc1l	99	68.263	Gambusia_affinis
ENSSPUG00000004233	PABPC1L	98	72.857	ENSGACG00000002792	pabpc1l	100	72.857	Gasterosteus_aculeatus
ENSSPUG00000004233	PABPC1L	99	91.009	ENSGAGG00000000589	PABPC1L	99	91.009	Gopherus_agassizii
ENSSPUG00000004233	PABPC1L	98	74.157	ENSGGOG00000004584	PABPC1L	99	74.157	Gorilla_gorilla
ENSSPUG00000004233	PABPC1L	99	72.354	ENSHBUG00000006134	pabpc1l	99	72.354	Haplochromis_burtoni
ENSSPUG00000004233	PABPC1L	98	70.335	ENSHGLG00000008434	PABPC1L	99	70.335	Heterocephalus_glaber_female
ENSSPUG00000004233	PABPC1L	98	70.335	ENSHGLG00100012151	PABPC1L	99	70.335	Heterocephalus_glaber_male
ENSSPUG00000004233	PABPC1L	57	84.831	ENSHGLG00100019506	-	100	84.831	Heterocephalus_glaber_male
ENSSPUG00000004233	PABPC1L	98	70.181	ENSHCOG00000009270	pabpc1l	99	70.181	Hippocampus_comes
ENSSPUG00000004233	PABPC1L	57	63.793	ENSIPUG00000006760	-	88	63.793	Ictalurus_punctatus
ENSSPUG00000004233	PABPC1L	99	76.266	ENSIPUG00000012602	pabpc1l	99	76.266	Ictalurus_punctatus
ENSSPUG00000004233	PABPC1L	58	64.368	ENSIPUG00000006780	-	85	64.368	Ictalurus_punctatus
ENSSPUG00000004233	PABPC1L	98	72.231	ENSSTOG00000003739	PABPC1L	99	72.231	Ictidomys_tridecemlineatus
ENSSPUG00000004233	PABPC1L	99	57.544	ENSJJAG00000022406	Pabpc1l	100	55.503	Jaculus_jaculus
ENSSPUG00000004233	PABPC1L	99	71.905	ENSKMAG00000016847	pabpc1l	100	71.905	Kryptolebias_marmoratus
ENSSPUG00000004233	PABPC1L	99	72.038	ENSLBEG00000010084	pabpc1l	99	72.038	Labrus_bergylta
ENSSPUG00000004233	PABPC1L	99	75.705	ENSLACG00000005762	PABPC1L	99	78.821	Latimeria_chalumnae
ENSSPUG00000004233	PABPC1L	99	78.233	ENSLOCG00000007519	pabpc1l	99	78.233	Lepisosteus_oculatus
ENSSPUG00000004233	PABPC1L	98	73.684	ENSLAFG00000003553	PABPC1L	100	73.684	Loxodonta_africana
ENSSPUG00000004233	PABPC1L	98	73.997	ENSMFAG00000040365	PABPC1L	99	73.997	Macaca_fascicularis
ENSSPUG00000004233	PABPC1L	98	72.231	ENSMNEG00000032298	PABPC1L	99	72.231	Macaca_nemestrina
ENSSPUG00000004233	PABPC1L	98	73.997	ENSMLEG00000043139	PABPC1L	99	73.997	Mandrillus_leucophaeus
ENSSPUG00000004233	PABPC1L	96	71.967	ENSMAMG00000011854	pabpc1l	97	71.967	Mastacembelus_armatus
ENSSPUG00000004233	PABPC1L	99	72.512	ENSMZEG00005023713	pabpc1l	99	72.512	Maylandia_zebra
ENSSPUG00000004233	PABPC1L	99	84.700	ENSMGAG00000003674	PABPC1L	100	84.700	Meleagris_gallopavo
ENSSPUG00000004233	PABPC1L	98	63.766	ENSMOCG00000013186	Pabpc1l	99	63.766	Microtus_ochrogaster
ENSSPUG00000004233	PABPC1L	99	72.452	ENSMMOG00000020574	-	90	91.538	Mola_mola
ENSSPUG00000004233	PABPC1L	96	77.760	ENSMODG00000016198	PABPC1L	99	77.760	Monodelphis_domestica
ENSSPUG00000004233	PABPC1L	96	72.549	ENSMALG00000021622	pabpc1l	100	72.549	Monopterus_albus
ENSSPUG00000004233	PABPC1L	99	65.610	MGP_CAROLIEiJ_G0024627	Pabpc1l	100	65.610	Mus_caroli
ENSSPUG00000004233	PABPC1L	99	65.452	ENSMUSG00000054582	Pabpc1l	100	65.452	Mus_musculus
ENSSPUG00000004233	PABPC1L	99	65.714	MGP_PahariEiJ_G0026071	Pabpc1l	99	65.714	Mus_pahari
ENSSPUG00000004233	PABPC1L	99	65.610	MGP_SPRETEiJ_G0025549	Pabpc1l	100	65.610	Mus_spretus
ENSSPUG00000004233	PABPC1L	98	72.960	ENSMPUG00000017646	PABPC1L	99	72.960	Mustela_putorius_furo
ENSSPUG00000004233	PABPC1L	97	69.683	ENSMLUG00000006324	PABPC1L	98	69.683	Myotis_lucifugus
ENSSPUG00000004233	PABPC1L	98	66.139	ENSNGAG00000010458	Pabpc1l	99	66.139	Nannospalax_galili
ENSSPUG00000004233	PABPC1L	99	72.771	ENSNBRG00000016633	pabpc1l	99	75.626	Neolamprologus_brichardi
ENSSPUG00000004233	PABPC1L	89	71.858	ENSMEUG00000007905	-	89	71.858	Notamacropus_eugenii
ENSSPUG00000004233	PABPC1L	98	72.392	ENSOPRG00000011846	PABPC1L	99	72.392	Ochotona_princeps
ENSSPUG00000004233	PABPC1L	98	64.000	ENSODEG00000015482	PABPC1L	99	64.000	Octodon_degus
ENSSPUG00000004233	PABPC1L	56	78.125	ENSODEG00000002920	-	97	78.125	Octodon_degus
ENSSPUG00000004233	PABPC1L	99	72.512	ENSONIG00000017314	pabpc1l	99	72.512	Oreochromis_niloticus
ENSSPUG00000004233	PABPC1L	89	67.254	ENSOANG00000015793	-	100	67.254	Ornithorhynchus_anatinus
ENSSPUG00000004233	PABPC1L	98	69.172	ENSOCUG00000003005	PABPC1L	99	69.172	Oryctolagus_cuniculus
ENSSPUG00000004233	PABPC1L	99	71.930	ENSORLG00000010322	pabpc1l	99	76.498	Oryzias_latipes
ENSSPUG00000004233	PABPC1L	99	72.089	ENSORLG00020021193	pabpc1l	99	76.498	Oryzias_latipes_hni
ENSSPUG00000004233	PABPC1L	99	71.930	ENSORLG00015017018	pabpc1l	99	76.498	Oryzias_latipes_hsok
ENSSPUG00000004233	PABPC1L	99	68.731	ENSOMEG00000010789	pabpc1l	99	68.731	Oryzias_melastigma
ENSSPUG00000004233	PABPC1L	98	72.134	ENSOGAG00000032999	PABPC1L	99	72.134	Otolemur_garnettii
ENSSPUG00000004233	PABPC1L	98	73.355	ENSOARG00000004578	PABPC1L	99	73.355	Ovis_aries
ENSSPUG00000004233	PABPC1L	98	74.157	ENSPPAG00000039677	PABPC1L	99	74.157	Pan_paniscus
ENSSPUG00000004233	PABPC1L	60	72.531	ENSPPRG00000019327	-	98	72.531	Panthera_pardus
ENSSPUG00000004233	PABPC1L	97	73.183	ENSPTIG00000006524	PABPC1L	99	73.183	Panthera_tigris_altaica
ENSSPUG00000004233	PABPC1L	61	81.481	ENSPTRG00000013531	PABPC1L	98	81.481	Pan_troglodytes
ENSSPUG00000004233	PABPC1L	98	73.997	ENSPANG00000018788	PABPC1L	99	73.997	Papio_anubis
ENSSPUG00000004233	PABPC1L	51	84.733	ENSPKIG00000016810	-	93	84.733	Paramormyrops_kingsleyae
ENSSPUG00000004233	PABPC1L	98	76.837	ENSPKIG00000007322	pabpc1l	99	76.837	Paramormyrops_kingsleyae
ENSSPUG00000004233	PABPC1L	66	93.525	ENSPSIG00000013289	PABPC1L	99	93.525	Pelodiscus_sinensis
ENSSPUG00000004233	PABPC1L	70	70.192	ENSPMGG00000023121	-	94	70.192	Periophthalmus_magnuspinnatus
ENSSPUG00000004233	PABPC1L	61	89.394	ENSPMGG00000023117	pabpc1l	97	84.651	Periophthalmus_magnuspinnatus
ENSSPUG00000004233	PABPC1L	98	64.070	ENSPEMG00000020671	Pabpc1l	99	64.547	Peromyscus_maniculatus_bairdii
ENSSPUG00000004233	PABPC1L	99	72.170	ENSPFOG00000013241	pabpc1l	99	72.170	Poecilia_formosa
ENSSPUG00000004233	PABPC1L	51	92.308	ENSPLAG00000023686	-	92	92.308	Poecilia_latipinna
ENSSPUG00000004233	PABPC1L	99	72.013	ENSPLAG00000017490	-	99	72.013	Poecilia_latipinna
ENSSPUG00000004233	PABPC1L	99	72.240	ENSPMEG00000007677	pabpc1l	99	72.240	Poecilia_mexicana
ENSSPUG00000004233	PABPC1L	51	92.308	ENSPMEG00000009185	-	88	92.308	Poecilia_mexicana
ENSSPUG00000004233	PABPC1L	65	81.598	ENSPREG00000015886	pabpc1l	99	81.598	Poecilia_reticulata
ENSSPUG00000004233	PABPC1L	98	73.676	ENSPPYG00000011042	PABPC1L	99	73.676	Pongo_abelii
ENSSPUG00000004233	PABPC1L	60	90.625	ENSPCAG00000011787	-	75	90.625	Procavia_capensis
ENSSPUG00000004233	PABPC1L	99	72.524	ENSPCOG00000020630	PABPC1L	100	72.524	Propithecus_coquereli
ENSSPUG00000004233	PABPC1L	98	72.063	ENSPVAG00000012663	PABPC1L	99	72.063	Pteropus_vampyrus
ENSSPUG00000004233	PABPC1L	99	70.016	ENSPNYG00000004101	pabpc1l	99	75.626	Pundamilia_nyererei
ENSSPUG00000004233	PABPC1L	99	68.780	ENSPNAG00000021248	pabpc1l	99	68.780	Pygocentrus_nattereri
ENSSPUG00000004233	PABPC1L	98	64.968	ENSRNOG00000012750	Pabpc1l	99	64.968	Rattus_norvegicus
ENSSPUG00000004233	PABPC1L	98	73.997	ENSRBIG00000035381	PABPC1L	99	73.997	Rhinopithecus_bieti
ENSSPUG00000004233	PABPC1L	98	73.836	ENSRROG00000044498	PABPC1L	99	73.836	Rhinopithecus_roxellana
ENSSPUG00000004233	PABPC1L	98	73.194	ENSSBOG00000009532	-	99	73.194	Saimiri_boliviensis_boliviensis
ENSSPUG00000004233	PABPC1L	97	72.435	ENSSHAG00000011446	PABPC1L	100	72.435	Sarcophilus_harrisii
ENSSPUG00000004233	PABPC1L	98	78.365	ENSSFOG00015017304	pabpc1l	99	78.365	Scleropages_formosus
ENSSPUG00000004233	PABPC1L	99	72.019	ENSSMAG00000010516	pabpc1l	98	88.235	Scophthalmus_maximus
ENSSPUG00000004233	PABPC1L	99	72.196	ENSSDUG00000014743	pabpc1l	99	72.196	Seriola_dumerili
ENSSPUG00000004233	PABPC1L	96	71.546	ENSSLDG00000006981	pabpc1l	98	86.124	Seriola_lalandi_dorsalis
ENSSPUG00000004233	PABPC1L	99	64.139	ENSSPAG00000017137	pabpc1l	99	64.139	Stegastes_partitus
ENSSPUG00000004233	PABPC1L	99	71.949	ENSSSCG00000007382	PABPC1L	99	71.949	Sus_scrofa
ENSSPUG00000004233	PABPC1L	99	84.038	ENSTGUG00000005114	PABPC1L	100	84.038	Taeniopygia_guttata
ENSSPUG00000004233	PABPC1L	96	72.123	ENSTRUG00000011085	pabpc1l	97	72.123	Takifugu_rubripes
ENSSPUG00000004233	PABPC1L	99	69.219	ENSTNIG00000017903	pabpc1l	99	69.219	Tetraodon_nigroviridis
ENSSPUG00000004233	PABPC1L	93	81.849	ENSTBEG00000002851	PABPC1L	79	81.849	Tupaia_belangeri
ENSSPUG00000004233	PABPC1L	93	71.692	ENSTTRG00000007618	PABPC1L	100	71.941	Tursiops_truncatus
ENSSPUG00000004233	PABPC1L	98	71.520	ENSUAMG00000017682	PABPC1L	99	71.520	Ursus_americanus
ENSSPUG00000004233	PABPC1L	64	81.337	ENSUMAG00000025436	PABPC1L	92	81.337	Ursus_maritimus
ENSSPUG00000004233	PABPC1L	97	80.237	ENSVVUG00000018939	PABPC1L	98	80.237	Vulpes_vulpes
ENSSPUG00000004233	PABPC1L	99	77.287	ENSXETG00000022831	pabpc1l	100	77.287	Xenopus_tropicalis
ENSSPUG00000004233	PABPC1L	99	71.905	ENSXCOG00000005459	pabpc1l	99	87.234	Xiphophorus_couchianus
ENSSPUG00000004233	PABPC1L	99	72.013	ENSXMAG00000017135	pabpc1l	99	72.013	Xiphophorus_maculatus