EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000004574 (Gene tree)
Gene ID: -
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 18640 bases
Position: chrQEPC01014531.1:1216538-1235177
Accession: 16900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000005920	SMN	PF06003.12	2.2e-16	1	1
ENSSPUP00000005917	SMN	PF06003.12	4.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000006297	SMNDC1-201	1739	-	ENSSPUP00000005917	238 (aa)	-	-
ENSSPUT00000006300	SMNDC1-202	1677	-	ENSSPUP00000005920	239 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000004574's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000004574's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000004574	SMNDC1	100	96.218	ENSG00000119953	SMNDC1	100	96.218	Homo_sapiens
ENSSPUG00000004574	SMNDC1	100	76.050	ENSAPOG00000021772	smndc1	100	76.050	Acanthochromis_polyacanthus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSAMEG00000005251	SMNDC1	100	96.218	Ailuropoda_melanoleuca
ENSSPUG00000004574	SMNDC1	100	77.311	ENSACIG00000004819	smndc1	100	77.311	Amphilophus_citrinellus
ENSSPUG00000004574	SMNDC1	100	76.050	ENSAOCG00000017869	smndc1	100	76.050	Amphiprion_ocellaris
ENSSPUG00000004574	SMNDC1	100	76.050	ENSAPEG00000007752	smndc1	100	76.050	Amphiprion_percula
ENSSPUG00000004574	SMNDC1	100	76.891	ENSATEG00000006830	smndc1	100	76.891	Anabas_testudineus
ENSSPUG00000004574	SMNDC1	83	97.475	ENSAPLG00000004322	SMNDC1	100	97.475	Anas_platyrhynchos
ENSSPUG00000004574	SMNDC1	100	97.479	ENSACAG00000005983	SMNDC1	100	97.479	Anolis_carolinensis
ENSSPUG00000004574	SMNDC1	100	96.218	ENSANAG00000032875	SMNDC1	100	96.218	Aotus_nancymaae
ENSSPUG00000004574	SMNDC1	100	76.891	ENSACLG00000016360	smndc1	100	76.891	Astatotilapia_calliptera
ENSSPUG00000004574	SMNDC1	100	76.891	ENSAMXG00000020310	smndc1	100	76.891	Astyanax_mexicanus
ENSSPUG00000004574	SMNDC1	100	95.798	ENSBTAG00000000551	SMNDC1	100	95.798	Bos_taurus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSCJAG00000018624	SMNDC1	100	96.218	Callithrix_jacchus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSCAFG00000010720	SMNDC1	100	96.218	Canis_familiaris
ENSSPUG00000004574	SMNDC1	100	96.218	ENSCAFG00020011913	SMNDC1	100	96.218	Canis_lupus_dingo
ENSSPUG00000004574	SMNDC1	100	95.798	ENSCHIG00000010604	SMNDC1	100	95.798	Capra_hircus
ENSSPUG00000004574	SMNDC1	100	96.639	ENSTSYG00000026454	SMNDC1	100	96.639	Carlito_syrichta
ENSSPUG00000004574	SMNDC1	84	94.527	ENSCAPG00000009132	SMNDC1	100	94.527	Cavia_aperea
ENSSPUG00000004574	SMNDC1	100	95.378	ENSCPOG00000031666	SMNDC1	100	95.378	Cavia_porcellus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSCCAG00000021793	SMNDC1	100	96.218	Cebus_capucinus
ENSSPUG00000004574	SMNDC1	100	95.798	ENSCATG00000035910	SMNDC1	100	95.798	Cercocebus_atys
ENSSPUG00000004574	SMNDC1	100	95.378	ENSCLAG00000002838	SMNDC1	100	95.378	Chinchilla_lanigera
ENSSPUG00000004574	SMNDC1	100	96.218	ENSCSAG00000005169	SMNDC1	100	96.218	Chlorocebus_sabaeus
ENSSPUG00000004574	SMNDC1	81	94.819	ENSCHOG00000002936	SMNDC1	100	94.819	Choloepus_hoffmanni
ENSSPUG00000004574	SMNDC1	100	97.479	ENSCPBG00000012837	SMNDC1	100	97.479	Chrysemys_picta_bellii
ENSSPUG00000004574	SMNDC1	100	96.218	ENSCANG00000031720	-	100	96.218	Colobus_angolensis_palliatus
ENSSPUG00000004574	SMNDC1	100	88.655	ENSCANG00000034620	-	100	88.655	Colobus_angolensis_palliatus
ENSSPUG00000004574	SMNDC1	100	75.210	ENSCANG00000036994	-	100	75.210	Colobus_angolensis_palliatus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSCGRG00001012973	Smndc1	100	96.218	Cricetulus_griseus_chok1gshd
ENSSPUG00000004574	SMNDC1	100	96.218	ENSCGRG00000012396	Smndc1	100	96.218	Cricetulus_griseus_crigri
ENSSPUG00000004574	SMNDC1	100	75.630	ENSCSEG00000015621	smndc1	100	75.630	Cynoglossus_semilaevis
ENSSPUG00000004574	SMNDC1	100	77.311	ENSCVAG00000020432	smndc1	100	77.311	Cyprinodon_variegatus
ENSSPUG00000004574	SMNDC1	100	80.672	ENSDARG00000056235	smndc1	100	80.672	Danio_rerio
ENSSPUG00000004574	SMNDC1	100	96.218	ENSDNOG00000016387	SMNDC1	83	96.218	Dasypus_novemcinctus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSDORG00000023715	Smndc1	100	96.218	Dipodomys_ordii
ENSSPUG00000004574	SMNDC1	95	42.231	FBgn0039977	CG17454	98	43.426	Drosophila_melanogaster
ENSSPUG00000004574	SMNDC1	100	71.369	ENSEBUG00000010929	smndc1	100	71.369	Eptatretus_burgeri
ENSSPUG00000004574	SMNDC1	100	96.218	ENSEASG00005014930	SMNDC1	100	96.218	Equus_asinus_asinus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSECAG00000029973	SMNDC1	100	96.218	Equus_caballus
ENSSPUG00000004574	SMNDC1	83	67.172	ENSEEUG00000013407	-	100	67.172	Erinaceus_europaeus
ENSSPUG00000004574	SMNDC1	100	78.571	ENSELUG00000000227	smndc1	100	78.571	Esox_lucius
ENSSPUG00000004574	SMNDC1	100	96.218	ENSFCAG00000027353	SMNDC1	100	96.218	Felis_catus
ENSSPUG00000004574	SMNDC1	100	97.479	ENSFALG00000002306	SMNDC1	100	97.479	Ficedula_albicollis
ENSSPUG00000004574	SMNDC1	100	95.378	ENSFDAG00000006468	SMNDC1	100	95.378	Fukomys_damarensis
ENSSPUG00000004574	SMNDC1	100	77.311	ENSFHEG00000020150	smndc1	100	77.311	Fundulus_heteroclitus
ENSSPUG00000004574	SMNDC1	100	76.891	ENSGMOG00000016585	smndc1	100	76.891	Gadus_morhua
ENSSPUG00000004574	SMNDC1	100	97.479	ENSGALG00000008561	SMNDC1	100	97.479	Gallus_gallus
ENSSPUG00000004574	SMNDC1	100	76.471	ENSGAFG00000011582	smndc1	100	76.471	Gambusia_affinis
ENSSPUG00000004574	SMNDC1	100	75.630	ENSGACG00000009468	smndc1	100	75.630	Gasterosteus_aculeatus
ENSSPUG00000004574	SMNDC1	100	97.479	ENSGAGG00000024547	SMNDC1	100	97.479	Gopherus_agassizii
ENSSPUG00000004574	SMNDC1	100	96.218	ENSGGOG00000010071	SMNDC1	100	96.218	Gorilla_gorilla
ENSSPUG00000004574	SMNDC1	100	76.891	ENSHBUG00000017596	smndc1	100	76.891	Haplochromis_burtoni
ENSSPUG00000004574	SMNDC1	100	95.378	ENSHGLG00000013390	-	100	95.378	Heterocephalus_glaber_female
ENSSPUG00000004574	SMNDC1	100	65.164	ENSHGLG00000001157	-	100	61.224	Heterocephalus_glaber_female
ENSSPUG00000004574	SMNDC1	100	95.378	ENSHGLG00100004814	-	100	95.378	Heterocephalus_glaber_male
ENSSPUG00000004574	SMNDC1	100	73.361	ENSHGLG00100004278	-	100	72.951	Heterocephalus_glaber_male
ENSSPUG00000004574	SMNDC1	100	74.059	ENSHCOG00000000783	smndc1	100	74.059	Hippocampus_comes
ENSSPUG00000004574	SMNDC1	100	78.992	ENSIPUG00000004217	smndc1	100	78.992	Ictalurus_punctatus
ENSSPUG00000004574	SMNDC1	100	96.639	ENSSTOG00000006088	SMNDC1	100	96.639	Ictidomys_tridecemlineatus
ENSSPUG00000004574	SMNDC1	100	95.798	ENSJJAG00000019974	Smndc1	100	95.798	Jaculus_jaculus
ENSSPUG00000004574	SMNDC1	100	75.630	ENSKMAG00000020134	smndc1	100	75.630	Kryptolebias_marmoratus
ENSSPUG00000004574	SMNDC1	100	75.630	ENSLBEG00000004598	smndc1	100	75.630	Labrus_bergylta
ENSSPUG00000004574	SMNDC1	100	83.613	ENSLACG00000007784	SMNDC1	100	83.613	Latimeria_chalumnae
ENSSPUG00000004574	SMNDC1	100	84.034	ENSLOCG00000012355	smndc1	100	84.034	Lepisosteus_oculatus
ENSSPUG00000004574	SMNDC1	100	95.798	ENSLAFG00000014353	SMNDC1	100	95.798	Loxodonta_africana
ENSSPUG00000004574	SMNDC1	100	78.151	ENSMFAG00000038381	-	100	78.151	Macaca_fascicularis
ENSSPUG00000004574	SMNDC1	100	96.218	ENSMFAG00000002433	-	100	96.218	Macaca_fascicularis
ENSSPUG00000004574	SMNDC1	100	78.151	ENSMMUG00000045875	-	100	78.151	Macaca_mulatta
ENSSPUG00000004574	SMNDC1	100	96.218	ENSMMUG00000007775	SMNDC1	100	96.218	Macaca_mulatta
ENSSPUG00000004574	SMNDC1	100	84.874	ENSMNEG00000033853	-	100	84.874	Macaca_nemestrina
ENSSPUG00000004574	SMNDC1	100	96.218	ENSMNEG00000042963	-	100	96.218	Macaca_nemestrina
ENSSPUG00000004574	SMNDC1	100	89.958	ENSMLEG00000040236	SMNDC1	100	89.540	Mandrillus_leucophaeus
ENSSPUG00000004574	SMNDC1	89	73.709	ENSMAMG00000018233	smndc1	87	73.709	Mastacembelus_armatus
ENSSPUG00000004574	SMNDC1	100	76.891	ENSMZEG00005027510	smndc1	100	76.891	Maylandia_zebra
ENSSPUG00000004574	SMNDC1	84	97.000	ENSMGAG00000010777	SMNDC1	84	97.000	Meleagris_gallopavo
ENSSPUG00000004574	SMNDC1	99	77.637	ENSMAUG00000005459	-	93	77.637	Mesocricetus_auratus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSMAUG00000012243	-	100	96.218	Mesocricetus_auratus
ENSSPUG00000004574	SMNDC1	100	95.378	ENSMICG00000027336	-	100	95.378	Microcebus_murinus
ENSSPUG00000004574	SMNDC1	100	83.613	ENSMICG00000031640	-	100	83.613	Microcebus_murinus
ENSSPUG00000004574	SMNDC1	100	95.798	ENSMOCG00000002458	Smndc1	100	95.798	Microtus_ochrogaster
ENSSPUG00000004574	SMNDC1	100	76.471	ENSMMOG00000008856	smndc1	100	76.471	Mola_mola
ENSSPUG00000004574	SMNDC1	100	96.639	ENSMODG00000010542	SMNDC1	100	96.639	Monodelphis_domestica
ENSSPUG00000004574	SMNDC1	100	76.891	ENSMALG00000017598	smndc1	100	76.891	Monopterus_albus
ENSSPUG00000004574	SMNDC1	100	95.378	MGP_CAROLIEiJ_G0023072	Smndc1	100	95.378	Mus_caroli
ENSSPUG00000004574	SMNDC1	100	95.798	ENSMUSG00000025024	Smndc1	100	95.798	Mus_musculus
ENSSPUG00000004574	SMNDC1	100	96.218	MGP_PahariEiJ_G0014560	Smndc1	100	96.218	Mus_pahari
ENSSPUG00000004574	SMNDC1	100	95.798	MGP_SPRETEiJ_G0023993	Smndc1	100	95.798	Mus_spretus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSMPUG00000002089	SMNDC1	100	96.218	Mustela_putorius_furo
ENSSPUG00000004574	SMNDC1	100	95.798	ENSMLUG00000016007	SMNDC1	100	95.798	Myotis_lucifugus
ENSSPUG00000004574	SMNDC1	100	96.639	ENSNGAG00000006833	Smndc1	100	96.639	Nannospalax_galili
ENSSPUG00000004574	SMNDC1	100	77.311	ENSNBRG00000017089	smndc1	100	77.311	Neolamprologus_brichardi
ENSSPUG00000004574	SMNDC1	100	96.218	ENSNLEG00000015471	SMNDC1	100	96.218	Nomascus_leucogenys
ENSSPUG00000004574	SMNDC1	82	57.000	ENSMEUG00000010120	-	99	57.000	Notamacropus_eugenii
ENSSPUG00000004574	SMNDC1	100	95.378	ENSOPRG00000015348	SMNDC1	100	95.378	Ochotona_princeps
ENSSPUG00000004574	SMNDC1	100	67.227	ENSODEG00000007594	-	100	64.286	Octodon_degus
ENSSPUG00000004574	SMNDC1	100	77.311	ENSONIG00000000434	smndc1	100	77.311	Oreochromis_niloticus
ENSSPUG00000004574	SMNDC1	100	97.059	ENSOANG00000001598	SMNDC1	100	97.059	Ornithorhynchus_anatinus
ENSSPUG00000004574	SMNDC1	100	95.378	ENSOCUG00000008145	-	100	95.378	Oryctolagus_cuniculus
ENSSPUG00000004574	SMNDC1	100	72.689	ENSOCUG00000012274	-	100	74.370	Oryctolagus_cuniculus
ENSSPUG00000004574	SMNDC1	100	76.050	ENSORLG00000005934	smndc1	95	76.050	Oryzias_latipes
ENSSPUG00000004574	SMNDC1	100	76.050	ENSORLG00020008796	smndc1	95	76.050	Oryzias_latipes_hni
ENSSPUG00000004574	SMNDC1	100	76.050	ENSORLG00015013666	smndc1	100	76.050	Oryzias_latipes_hsok
ENSSPUG00000004574	SMNDC1	100	77.731	ENSOMEG00000007590	smndc1	100	77.731	Oryzias_melastigma
ENSSPUG00000004574	SMNDC1	100	95.798	ENSOGAG00000000571	SMNDC1	100	95.798	Otolemur_garnettii
ENSSPUG00000004574	SMNDC1	100	95.798	ENSOARG00000009500	SMNDC1	100	95.798	Ovis_aries
ENSSPUG00000004574	SMNDC1	100	96.218	ENSPPAG00000027815	SMNDC1	100	96.218	Pan_paniscus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSPPRG00000013749	SMNDC1	100	96.218	Panthera_pardus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSPTIG00000011451	SMNDC1	100	96.218	Panthera_tigris_altaica
ENSSPUG00000004574	SMNDC1	100	96.218	ENSPTRG00000002937	SMNDC1	100	96.218	Pan_troglodytes
ENSSPUG00000004574	SMNDC1	100	96.218	ENSPANG00000020805	-	100	96.218	Papio_anubis
ENSSPUG00000004574	SMNDC1	100	90.336	ENSPANG00000031346	-	100	90.336	Papio_anubis
ENSSPUG00000004574	SMNDC1	100	79.832	ENSPKIG00000017164	smndc1	100	79.832	Paramormyrops_kingsleyae
ENSSPUG00000004574	SMNDC1	100	97.479	ENSPSIG00000012257	SMNDC1	100	97.479	Pelodiscus_sinensis
ENSSPUG00000004574	SMNDC1	100	73.950	ENSPMGG00000015651	smndc1	100	73.950	Periophthalmus_magnuspinnatus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSPEMG00000022058	Smndc1	100	96.218	Peromyscus_maniculatus_bairdii
ENSSPUG00000004574	SMNDC1	100	68.033	ENSPMAG00000007705	smndc1	100	68.033	Petromyzon_marinus
ENSSPUG00000004574	SMNDC1	100	96.639	ENSPCIG00000018419	SMNDC1	100	96.639	Phascolarctos_cinereus
ENSSPUG00000004574	SMNDC1	97	62.174	ENSPCIG00000009693	-	100	62.174	Phascolarctos_cinereus
ENSSPUG00000004574	SMNDC1	100	77.311	ENSPFOG00000017113	smndc1	100	77.311	Poecilia_formosa
ENSSPUG00000004574	SMNDC1	100	76.471	ENSPLAG00000010372	smndc1	100	76.471	Poecilia_latipinna
ENSSPUG00000004574	SMNDC1	100	77.731	ENSPMEG00000012288	smndc1	100	77.731	Poecilia_mexicana
ENSSPUG00000004574	SMNDC1	100	76.891	ENSPREG00000012279	smndc1	100	76.891	Poecilia_reticulata
ENSSPUG00000004574	SMNDC1	100	96.218	ENSPPYG00000002643	SMNDC1	100	96.218	Pongo_abelii
ENSSPUG00000004574	SMNDC1	81	95.337	ENSPCAG00000016183	SMNDC1	100	95.337	Procavia_capensis
ENSSPUG00000004574	SMNDC1	100	95.798	ENSPCOG00000024343	SMNDC1	100	95.798	Propithecus_coquereli
ENSSPUG00000004574	SMNDC1	100	73.109	ENSPVAG00000004368	SMNDC1	100	73.109	Pteropus_vampyrus
ENSSPUG00000004574	SMNDC1	98	67.521	ENSPNYG00000024093	smndc1	98	67.521	Pundamilia_nyererei
ENSSPUG00000004574	SMNDC1	100	77.311	ENSPNAG00000025285	smndc1	100	77.311	Pygocentrus_nattereri
ENSSPUG00000004574	SMNDC1	100	95.378	ENSRNOG00000014833	Smndc1	100	95.378	Rattus_norvegicus
ENSSPUG00000004574	SMNDC1	100	95.798	ENSRBIG00000000224	-	100	95.798	Rhinopithecus_bieti
ENSSPUG00000004574	SMNDC1	100	79.832	ENSRBIG00000032452	-	100	79.832	Rhinopithecus_bieti
ENSSPUG00000004574	SMNDC1	100	96.218	ENSRROG00000044992	-	100	96.218	Rhinopithecus_roxellana
ENSSPUG00000004574	SMNDC1	100	80.252	ENSRROG00000039125	-	100	80.252	Rhinopithecus_roxellana
ENSSPUG00000004574	SMNDC1	100	96.218	ENSSBOG00000026789	SMNDC1	100	96.218	Saimiri_boliviensis_boliviensis
ENSSPUG00000004574	SMNDC1	100	96.639	ENSSHAG00000015189	SMNDC1	100	96.639	Sarcophilus_harrisii
ENSSPUG00000004574	SMNDC1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSSPUG00000004574	SMNDC1	100	77.824	ENSSMAG00000020118	smndc1	100	77.824	Scophthalmus_maximus
ENSSPUG00000004574	SMNDC1	100	77.731	ENSSDUG00000015330	smndc1	100	77.731	Seriola_dumerili
ENSSPUG00000004574	SMNDC1	100	77.731	ENSSLDG00000017325	smndc1	100	77.731	Seriola_lalandi_dorsalis
ENSSPUG00000004574	SMNDC1	100	95.378	ENSSARG00000006063	SMNDC1	100	95.378	Sorex_araneus
ENSSPUG00000004574	SMNDC1	100	75.630	ENSSPAG00000000338	smndc1	100	75.630	Stegastes_partitus
ENSSPUG00000004574	SMNDC1	100	95.798	ENSSSCG00000030507	SMNDC1	100	95.798	Sus_scrofa
ENSSPUG00000004574	SMNDC1	100	97.479	ENSTGUG00000010599	SMNDC1	100	97.479	Taeniopygia_guttata
ENSSPUG00000004574	SMNDC1	100	73.529	ENSTRUG00000023281	smndc1	100	73.529	Takifugu_rubripes
ENSSPUG00000004574	SMNDC1	100	73.950	ENSTNIG00000013331	smndc1	100	73.950	Tetraodon_nigroviridis
ENSSPUG00000004574	SMNDC1	100	95.798	ENSTBEG00000014337	SMNDC1	100	95.798	Tupaia_belangeri
ENSSPUG00000004574	SMNDC1	100	96.218	ENSUAMG00000008142	SMNDC1	100	96.218	Ursus_americanus
ENSSPUG00000004574	SMNDC1	100	96.218	ENSUMAG00000023722	SMNDC1	100	96.218	Ursus_maritimus
ENSSPUG00000004574	SMNDC1	83	96.465	ENSVPAG00000003402	SMNDC1	100	96.465	Vicugna_pacos
ENSSPUG00000004574	SMNDC1	100	96.218	ENSVVUG00000007820	SMNDC1	100	96.218	Vulpes_vulpes
ENSSPUG00000004574	SMNDC1	60	80.986	ENSXETG00000015415	SMNDC1	100	80.986	Xenopus_tropicalis
ENSSPUG00000004574	SMNDC1	100	76.891	ENSXCOG00000009159	smndc1	100	76.891	Xiphophorus_couchianus
ENSSPUG00000004574	SMNDC1	100	76.471	ENSXMAG00000012755	smndc1	100	76.471	Xiphophorus_maculatus