EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000004872 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 119435 bases
Position: chrQEPC01003261.1:2574506-2693940
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000006334	RNA_pol_Rpb2_5	PF04567.17	2.8e-08	1	1
ENSSPUP00000006326	RNA_pol_Rpb2_1	PF04563.15	4.2e-37	1	1
ENSSPUP00000006326	RNA_pol_Rpb2_2	PF04561.14	1.1e-25	1	1
ENSSPUP00000006334	RNA_pol_Rpb2_2	PF04561.14	1.3e-24	1	1
ENSSPUP00000006334	RNA_pol_Rpb2_4	PF04566.13	9.4e-26	1	1
ENSSPUP00000006334	RNA_pol_Rpb2_3	PF04565.16	1.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000006745	-	1512	-	ENSSPUP00000006334	479 (aa)	-	-
ENSSPUT00000006737	-	936	-	ENSSPUP00000006326	311 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000004872's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000004872's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000004872	-	100	96.458	ENSG00000013503	POLR3B	100	95.266	Homo_sapiens
ENSSPUG00000004872	-	57	74.182	ENSCING00000007021	-	100	74.182	Ciona_intestinalis
ENSSPUG00000004872	-	97	37.083	ENSCSAVG00000000129	-	55	37.083	Ciona_savignyi
ENSSPUG00000004872	-	99	68.201	ENSCSAVG00000007982	-	55	63.507	Ciona_savignyi
ENSSPUG00000004872	-	97	36.590	ENSDARG00000098783	polr2b	74	32.616	Danio_rerio
ENSSPUG00000004872	-	97	36.798	ENSFHEG00000015503	polr2b	51	36.798	Fundulus_heteroclitus
ENSSPUG00000004872	-	82	32.616	ENSGAFG00000016504	POLR2B	74	32.616	Gambusia_affinis
ENSSPUG00000004872	-	82	32.616	ENSLBEG00000016719	POLR2B	74	32.616	Labrus_bergylta
ENSSPUG00000004872	-	82	32.616	ENSLBEG00000010055	-	74	32.616	Labrus_bergylta
ENSSPUG00000004872	-	97	37.006	ENSLAFG00000003198	POLR2B	51	37.006	Loxodonta_africana
ENSSPUG00000004872	-	56	94.253	ENSMGAG00000012873	-	73	94.253	Meleagris_gallopavo
ENSSPUG00000004872	-	100	96.458	ENSMUSG00000034453	Polr3b	98	92.737	Mus_musculus
ENSSPUG00000004872	-	97	36.590	ENSOANG00000011212	-	56	36.590	Ornithorhynchus_anatinus
ENSSPUG00000004872	-	97	36.590	ENSPSIG00000002973	POLR2B	59	36.590	Pelodiscus_sinensis
ENSSPUG00000004872	-	56	85.632	ENSPMAG00000002089	-	73	81.967	Petromyzon_marinus
ENSSPUG00000004872	-	99	90.968	ENSSARG00000013960	POLR3B	51	89.583	Sorex_araneus
ENSSPUG00000004872	-	98	89.251	ENSSPAG00000008931	polr3b	75	89.251	Stegastes_partitus
ENSSPUG00000004872	-	87	91.144	ENSTNIG00000012124	-	99	91.144	Tetraodon_nigroviridis
ENSSPUG00000004872	-	97	37.006	ENSUAMG00000002725	-	59	37.006	Ursus_americanus
ENSSPUG00000004872	-	82	32.616	ENSXCOG00000014657	POLR2B	74	32.616	Xiphophorus_couchianus