EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPUG00000006267 (Gene tree)
Gene ID: -
Gene Symbol: PUM1
Alias: KIAA0099|PUMH1
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Minus strand
Length: 236854 bases
Position: chrQEPC01012515.1:1256558-1493411
Accession: 14957
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000008095	PUF	PF00806.19	1.6e-72	1	8
ENSSPUP00000008095	PUF	PF00806.19	1.6e-72	2	8
ENSSPUP00000008095	PUF	PF00806.19	1.6e-72	3	8
ENSSPUP00000008095	PUF	PF00806.19	1.6e-72	4	8
ENSSPUP00000008095	PUF	PF00806.19	1.6e-72	5	8
ENSSPUP00000008095	PUF	PF00806.19	1.6e-72	6	8
ENSSPUP00000008095	PUF	PF00806.19	1.6e-72	7	8
ENSSPUP00000008095	PUF	PF00806.19	1.6e-72	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000008632	PUM1-201	3659	-	ENSSPUP00000008095	1188 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000006267's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000006267's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPUG00000006267	PUM1	88	77.046	ENSSPUG00000017012	PUM2	99	76.576

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000006267	PUM1	100	97.306	ENSG00000134644	PUM1	100	98.007	Homo_sapiens
ENSSPUG00000006267	PUM1	90	91.566	ENSAPOG00000021632	pum1	100	91.566	Acanthochromis_polyacanthus
ENSSPUG00000006267	PUM1	100	97.143	ENSAMEG00000017656	PUM1	97	97.143	Ailuropoda_melanoleuca
ENSSPUG00000006267	PUM1	100	75.062	ENSACIG00000021013	pum1	100	77.261	Amphilophus_citrinellus
ENSSPUG00000006267	PUM1	90	91.566	ENSAOCG00000003944	pum1	100	91.566	Amphiprion_ocellaris
ENSSPUG00000006267	PUM1	90	91.566	ENSAPEG00000014550	pum1	100	91.566	Amphiprion_percula
ENSSPUG00000006267	PUM1	90	91.566	ENSATEG00000016004	pum1	100	91.566	Anabas_testudineus
ENSSPUG00000006267	PUM1	100	98.318	ENSAPLG00000009351	PUM1	100	98.318	Anas_platyrhynchos
ENSSPUG00000006267	PUM1	100	96.296	ENSACAG00000000682	PUM1	98	96.212	Anolis_carolinensis
ENSSPUG00000006267	PUM1	100	96.804	ENSANAG00000027865	PUM1	100	98.068	Aotus_nancymaae
ENSSPUG00000006267	PUM1	90	77.016	ENSACLG00000019354	pum1	100	79.463	Astatotilapia_calliptera
ENSSPUG00000006267	PUM1	100	79.264	ENSAMXG00000020607	pum1	96	79.682	Astyanax_mexicanus
ENSSPUG00000006267	PUM1	100	97.054	ENSBTAG00000018979	PUM1	100	99.034	Bos_taurus
ENSSPUG00000006267	PUM1	100	96.972	ENSCJAG00000006035	PUM1	100	98.309	Callithrix_jacchus
ENSSPUG00000006267	PUM1	100	94.954	ENSCAFG00000011205	PUM1	100	94.954	Canis_familiaris
ENSSPUG00000006267	PUM1	91	96.221	ENSCAFG00020024616	PUM1	98	98.551	Canis_lupus_dingo
ENSSPUG00000006267	PUM1	100	97.054	ENSCHIG00000012952	PUM1	100	98.551	Capra_hircus
ENSSPUG00000006267	PUM1	100	96.888	ENSTSYG00000008868	PUM1	100	97.758	Carlito_syrichta
ENSSPUG00000006267	PUM1	100	96.888	ENSCPOG00000031613	PUM1	100	97.758	Cavia_porcellus
ENSSPUG00000006267	PUM1	100	95.034	ENSCATG00000017991	PUM1	100	98.792	Cercocebus_atys
ENSSPUG00000006267	PUM1	100	96.972	ENSCLAG00000007662	PUM1	100	97.758	Chinchilla_lanigera
ENSSPUG00000006267	PUM1	100	96.333	ENSCSAG00000001028	PUM1	100	96.333	Chlorocebus_sabaeus
ENSSPUG00000006267	PUM1	93	93.525	ENSCHOG00000010245	PUM1	93	93.525	Choloepus_hoffmanni
ENSSPUG00000006267	PUM1	100	98.148	ENSCPBG00000009288	PUM1	100	99.275	Chrysemys_picta_bellii
ENSSPUG00000006267	PUM1	100	97.306	ENSCANG00000042606	PUM1	100	98.309	Colobus_angolensis_palliatus
ENSSPUG00000006267	PUM1	100	96.380	ENSCGRG00001024949	Pum1	100	97.011	Cricetulus_griseus_chok1gshd
ENSSPUG00000006267	PUM1	100	96.380	ENSCGRG00000014197	Pum1	100	97.011	Cricetulus_griseus_crigri
ENSSPUG00000006267	PUM1	90	76.296	ENSCSEG00000015981	pum1	100	78.168	Cynoglossus_semilaevis
ENSSPUG00000006267	PUM1	100	74.338	ENSCVAG00000007043	pum1	100	76.364	Cyprinodon_variegatus
ENSSPUG00000006267	PUM1	100	79.515	ENSDARG00000099256	pum1	100	79.849	Danio_rerio
ENSSPUG00000006267	PUM1	100	96.804	ENSDNOG00000010939	PUM1	100	96.804	Dasypus_novemcinctus
ENSSPUG00000006267	PUM1	85	97.826	ENSDORG00000001875	Pum1	100	97.826	Dipodomys_ordii
ENSSPUG00000006267	PUM1	88	92.090	ENSETEG00000004355	PUM1	87	92.090	Echinops_telfairi
ENSSPUG00000006267	PUM1	100	96.970	ENSEASG00005010813	PUM1	100	96.970	Equus_asinus_asinus
ENSSPUG00000006267	PUM1	100	96.804	ENSECAG00000021369	PUM1	100	96.804	Equus_caballus
ENSSPUG00000006267	PUM1	76	99.333	ENSEEUG00000003871	PUM1	74	99.333	Erinaceus_europaeus
ENSSPUG00000006267	PUM1	100	76.296	ENSELUG00000002409	pum1	100	83.416	Esox_lucius
ENSSPUG00000006267	PUM1	100	97.225	ENSFCAG00000010374	PUM1	100	99.034	Felis_catus
ENSSPUG00000006267	PUM1	100	96.817	ENSFALG00000001214	PUM1	97	96.817	Ficedula_albicollis
ENSSPUG00000006267	PUM1	100	96.888	ENSFDAG00000011319	PUM1	100	97.634	Fukomys_damarensis
ENSSPUG00000006267	PUM1	100	98.570	ENSGALG00000042598	PUM1	99	99.798	Gallus_gallus
ENSSPUG00000006267	PUM1	90	88.046	ENSGAFG00000015617	pum1	100	91.084	Gambusia_affinis
ENSSPUG00000006267	PUM1	100	75.062	ENSGACG00000005717	pum1	100	76.771	Gasterosteus_aculeatus
ENSSPUG00000006267	PUM1	100	97.897	ENSGAGG00000001290	PUM1	99	99.595	Gopherus_agassizii
ENSSPUG00000006267	PUM1	100	97.306	ENSGGOG00000011983	PUM1	100	98.309	Gorilla_gorilla
ENSSPUG00000006267	PUM1	100	74.669	ENSHBUG00000018718	pum1	100	76.777	Haplochromis_burtoni
ENSSPUG00000006267	PUM1	100	96.720	ENSHGLG00000013819	Pum1	100	97.509	Heterocephalus_glaber_female
ENSSPUG00000006267	PUM1	100	96.720	ENSHGLG00100008621	Pum1	100	97.509	Heterocephalus_glaber_male
ENSSPUG00000006267	PUM1	90	75.648	ENSHCOG00000005149	pum1	100	75.926	Hippocampus_comes
ENSSPUG00000006267	PUM1	100	77.704	ENSIPUG00000020421	pum1	100	78.405	Ictalurus_punctatus
ENSSPUG00000006267	PUM1	100	97.054	ENSSTOG00000010757	PUM1	100	97.634	Ictidomys_tridecemlineatus
ENSSPUG00000006267	PUM1	100	96.717	ENSJJAG00000000530	Pum1	100	97.136	Jaculus_jaculus
ENSSPUG00000006267	PUM1	100	74.503	ENSKMAG00000003481	pum1	100	76.529	Kryptolebias_marmoratus
ENSSPUG00000006267	PUM1	100	74.129	ENSLBEG00000002527	pum1	100	76.407	Labrus_bergylta
ENSSPUG00000006267	PUM1	100	87.677	ENSLACG00000017188	PUM1	99	87.760	Latimeria_chalumnae
ENSSPUG00000006267	PUM1	100	88.481	ENSLOCG00000005210	pum1	99	88.564	Lepisosteus_oculatus
ENSSPUG00000006267	PUM1	100	96.720	ENSLAFG00000003178	PUM1	100	96.720	Loxodonta_africana
ENSSPUG00000006267	PUM1	100	96.899	ENSMFAG00000010291	PUM1	100	98.792	Macaca_fascicularis
ENSSPUG00000006267	PUM1	100	96.899	ENSMMUG00000013520	PUM1	100	98.309	Macaca_mulatta
ENSSPUG00000006267	PUM1	100	97.306	ENSMNEG00000034639	PUM1	100	98.309	Macaca_nemestrina
ENSSPUG00000006267	PUM1	100	97.306	ENSMLEG00000038743	PUM1	100	98.309	Mandrillus_leucophaeus
ENSSPUG00000006267	PUM1	100	74.917	ENSMAMG00000011606	pum1	100	77.025	Mastacembelus_armatus
ENSSPUG00000006267	PUM1	100	74.669	ENSMZEG00005005834	pum1	100	76.777	Maylandia_zebra
ENSSPUG00000006267	PUM1	100	98.318	ENSMGAG00000000724	PUM1	100	98.318	Meleagris_gallopavo
ENSSPUG00000006267	PUM1	100	96.552	ENSMAUG00000022090	Pum1	100	97.136	Mesocricetus_auratus
ENSSPUG00000006267	PUM1	99	94.861	ENSMICG00000012213	-	100	95.169	Microcebus_murinus
ENSSPUG00000006267	PUM1	100	97.056	ENSMICG00000007713	-	100	98.551	Microcebus_murinus
ENSSPUG00000006267	PUM1	100	96.384	ENSMOCG00000015463	Pum1	100	97.011	Microtus_ochrogaster
ENSSPUG00000006267	PUM1	90	88.276	ENSMMOG00000019817	pum1	100	91.325	Mola_mola
ENSSPUG00000006267	PUM1	100	97.479	ENSMODG00000017067	PUM1	100	97.479	Monodelphis_domestica
ENSSPUG00000006267	PUM1	90	88.506	ENSMALG00000016399	pum1	100	91.566	Monopterus_albus
ENSSPUG00000006267	PUM1	100	96.380	MGP_CAROLIEiJ_G0026549	Pum1	100	97.011	Mus_caroli
ENSSPUG00000006267	PUM1	100	96.465	ENSMUSG00000028580	Pum1	100	96.887	Mus_musculus
ENSSPUG00000006267	PUM1	100	96.296	MGP_PahariEiJ_G0028881	Pum1	100	96.887	Mus_pahari
ENSSPUG00000006267	PUM1	100	96.380	MGP_SPRETEiJ_G0027529	Pum1	100	96.887	Mus_spretus
ENSSPUG00000006267	PUM1	100	97.222	ENSMPUG00000015454	PUM1	100	97.222	Mustela_putorius_furo
ENSSPUG00000006267	PUM1	100	96.804	ENSMLUG00000006490	PUM1	100	96.804	Myotis_lucifugus
ENSSPUG00000006267	PUM1	100	96.801	ENSNGAG00000002378	Pum1	100	97.758	Nannospalax_galili
ENSSPUG00000006267	PUM1	80	81.559	ENSNBRG00000010689	pum1	100	83.951	Neolamprologus_brichardi
ENSSPUG00000006267	PUM1	100	95.960	ENSNLEG00000001151	PUM1	100	96.528	Nomascus_leucogenys
ENSSPUG00000006267	PUM1	76	95.455	ENSMEUG00000000976	-	75	94.595	Notamacropus_eugenii
ENSSPUG00000006267	PUM1	83	98.131	ENSOPRG00000001776	PUM1	76	98.131	Ochotona_princeps
ENSSPUG00000006267	PUM1	100	96.886	ENSODEG00000003465	PUM1	100	97.634	Octodon_degus
ENSSPUG00000006267	PUM1	100	75.246	ENSONIG00000002290	pum1	100	77.107	Oreochromis_niloticus
ENSSPUG00000006267	PUM1	81	77.017	ENSOANG00000004902	-	100	77.017	Ornithorhynchus_anatinus
ENSSPUG00000006267	PUM1	100	96.468	ENSOCUG00000008641	PUM1	99	96.468	Oryctolagus_cuniculus
ENSSPUG00000006267	PUM1	100	75.330	ENSORLG00000011482	pum1	100	76.689	Oryzias_latipes
ENSSPUG00000006267	PUM1	100	75.413	ENSORLG00020019461	pum1	100	76.689	Oryzias_latipes_hni
ENSSPUG00000006267	PUM1	100	75.413	ENSORLG00015011375	pum1	100	76.771	Oryzias_latipes_hsok
ENSSPUG00000006267	PUM1	90	93.253	ENSOMEG00000009312	pum1	100	91.325	Oryzias_melastigma
ENSSPUG00000006267	PUM1	100	94.207	ENSOGAG00000011063	PUM1	100	94.207	Otolemur_garnettii
ENSSPUG00000006267	PUM1	100	96.215	ENSOARG00000001899	PUM1	100	98.551	Ovis_aries
ENSSPUG00000006267	PUM1	100	97.306	ENSPPAG00000044003	PUM1	100	98.309	Pan_paniscus
ENSSPUG00000006267	PUM1	100	97.306	ENSPPRG00000001370	PUM1	100	98.007	Panthera_pardus
ENSSPUG00000006267	PUM1	100	97.138	ENSPTIG00000010798	PUM1	100	97.758	Panthera_tigris_altaica
ENSSPUG00000006267	PUM1	100	97.306	ENSPTRG00000000453	PUM1	100	98.309	Pan_troglodytes
ENSSPUG00000006267	PUM1	100	97.306	ENSPANG00000016338	PUM1	100	98.792	Papio_anubis
ENSSPUG00000006267	PUM1	100	78.560	ENSPKIG00000010578	pum1	100	78.300	Paramormyrops_kingsleyae
ENSSPUG00000006267	PUM1	100	98.401	ENSPSIG00000014118	PUM1	100	98.401	Pelodiscus_sinensis
ENSSPUG00000006267	PUM1	80	79.902	ENSPMGG00000005836	pum1	100	82.396	Periophthalmus_magnuspinnatus
ENSSPUG00000006267	PUM1	100	96.552	ENSPEMG00000010009	Pum1	100	97.136	Peromyscus_maniculatus_bairdii
ENSSPUG00000006267	PUM1	100	97.563	ENSPCIG00000014151	PUM1	100	99.275	Phascolarctos_cinereus
ENSSPUG00000006267	PUM1	95	77.758	ENSPFOG00000007289	pum1	99	83.028	Poecilia_formosa
ENSSPUG00000006267	PUM1	100	73.693	ENSPLAG00000007256	pum1	100	78.860	Poecilia_latipinna
ENSSPUG00000006267	PUM1	90	77.696	ENSPMEG00000019543	pum1	99	78.841	Poecilia_mexicana
ENSSPUG00000006267	PUM1	100	74.917	ENSPREG00000005195	pum1	100	81.576	Poecilia_reticulata
ENSSPUG00000006267	PUM1	100	95.380	ENSPPYG00000001621	PUM1	100	95.380	Pongo_abelii
ENSSPUG00000006267	PUM1	78	99.074	ENSPCAG00000001979	PUM1	74	99.074	Procavia_capensis
ENSSPUG00000006267	PUM1	100	97.056	ENSPCOG00000004398	PUM1	100	98.551	Propithecus_coquereli
ENSSPUG00000006267	PUM1	100	95.118	ENSPVAG00000005207	PUM1	97	95.118	Pteropus_vampyrus
ENSSPUG00000006267	PUM1	100	74.752	ENSPNYG00000009518	pum1	100	82.169	Pundamilia_nyererei
ENSSPUG00000006267	PUM1	100	79.515	ENSPNAG00000026728	pum1	100	81.106	Pygocentrus_nattereri
ENSSPUG00000006267	PUM1	100	96.296	ENSRNOG00000011709	Pum1	100	96.296	Rattus_norvegicus
ENSSPUG00000006267	PUM1	100	97.306	ENSRBIG00000042521	PUM1	100	98.792	Rhinopithecus_bieti
ENSSPUG00000006267	PUM1	100	97.306	ENSRROG00000020156	PUM1	100	98.309	Rhinopithecus_roxellana
ENSSPUG00000006267	PUM1	100	97.056	ENSSBOG00000032037	PUM1	100	98.309	Saimiri_boliviensis_boliviensis
ENSSPUG00000006267	PUM1	100	97.395	ENSSHAG00000010918	PUM1	100	97.395	Sarcophilus_harrisii
ENSSPUG00000006267	PUM1	90	88.506	ENSSMAG00000010918	pum1	100	91.566	Scophthalmus_maximus
ENSSPUG00000006267	PUM1	100	74.834	ENSSDUG00000009021	pum1	100	77.190	Seriola_dumerili
ENSSPUG00000006267	PUM1	95	76.428	ENSSLDG00000009667	pum1	100	79.275	Seriola_lalandi_dorsalis
ENSSPUG00000006267	PUM1	94	96.749	ENSSARG00000003055	PUM1	91	96.749	Sorex_araneus
ENSSPUG00000006267	PUM1	90	91.566	ENSSPAG00000016636	pum1	100	91.566	Stegastes_partitus
ENSSPUG00000006267	PUM1	100	98.178	ENSSSCG00000003591	PUM1	100	99.034	Sus_scrofa
ENSSPUG00000006267	PUM1	100	74.731	ENSTRUG00000013121	pum1	100	83.580	Takifugu_rubripes
ENSSPUG00000006267	PUM1	100	75.062	ENSTNIG00000016983	pum1	99	77.178	Tetraodon_nigroviridis
ENSSPUG00000006267	PUM1	87	93.902	ENSTBEG00000013810	PUM1	89	93.902	Tupaia_belangeri
ENSSPUG00000006267	PUM1	92	97.354	ENSTTRG00000007436	PUM1	90	97.354	Tursiops_truncatus
ENSSPUG00000006267	PUM1	99	96.679	ENSUAMG00000018262	-	100	96.679	Ursus_americanus
ENSSPUG00000006267	PUM1	95	99.034	ENSUMAG00000009211	PUM1	100	99.034	Ursus_maritimus
ENSSPUG00000006267	PUM1	92	98.506	ENSVPAG00000005902	PUM1	92	98.506	Vicugna_pacos
ENSSPUG00000006267	PUM1	100	97.225	ENSVVUG00000014631	PUM1	100	99.034	Vulpes_vulpes
ENSSPUG00000006267	PUM1	100	88.413	ENSXETG00000012904	pum1	99	88.413	Xenopus_tropicalis
ENSSPUG00000006267	PUM1	100	74.172	ENSXMAG00000002945	pum1	100	78.653	Xiphophorus_maculatus