EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPUG00000006797 (Gene tree)
Gene ID: -
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 98032 bases
Position: chrQEPC01010037.1:127887-225918
Accession: 24086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000008757	DND1_DSRM	PF14709.7	5.6e-26	1	1
ENSSPUP00000008757	RRM_1	PF00076.22	4.2e-39	1	3
ENSSPUP00000008757	RRM_1	PF00076.22	4.2e-39	2	3
ENSSPUP00000008757	RRM_1	PF00076.22	4.2e-39	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000009339	A1CF-201	1776	-	ENSSPUP00000008757	591 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000006797's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000006797's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPUG00000006797	A1CF	84	72.085	ENSSPUG00000012525	-	81	72.085
ENSSPUG00000006797	A1CF	50	52.189	ENSSPUG00000010725	SYNCRIP	63	45.179
ENSSPUG00000006797	A1CF	51	53.115	ENSSPUG00000004565	HNRNPR	50	52.258
ENSSPUG00000006797	A1CF	71	59.441	ENSSPUG00000007515	RBM47	61	69.470
ENSSPUG00000006797	A1CF	84	72.760	ENSSPUG00000004773	-	91	72.760

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000006797	A1CF	99	84.193	ENSG00000148584	A1CF	99	84.193	Homo_sapiens
ENSSPUG00000006797	A1CF	95	73.322	ENSAPOG00000008259	a1cf	95	73.322	Acanthochromis_polyacanthus
ENSSPUG00000006797	A1CF	95	86.926	ENSAMEG00000000523	A1CF	95	87.456	Ailuropoda_melanoleuca
ENSSPUG00000006797	A1CF	95	72.991	ENSACIG00000008632	a1cf	95	74.658	Amphilophus_citrinellus
ENSSPUG00000006797	A1CF	95	73.868	ENSAOCG00000023744	a1cf	90	82.407	Amphiprion_ocellaris
ENSSPUG00000006797	A1CF	95	75.087	ENSAPEG00000009537	a1cf	95	75.958	Amphiprion_percula
ENSSPUG00000006797	A1CF	95	75.000	ENSATEG00000013720	a1cf	95	76.712	Anabas_testudineus
ENSSPUG00000006797	A1CF	95	90.036	ENSAPLG00000002964	A1CF	95	90.391	Anas_platyrhynchos
ENSSPUG00000006797	A1CF	96	85.614	ENSACAG00000015269	A1CF	97	85.614	Anolis_carolinensis
ENSSPUG00000006797	A1CF	99	83.416	ENSANAG00000019974	A1CF	99	83.860	Aotus_nancymaae
ENSSPUG00000006797	A1CF	95	72.174	ENSACLG00000017428	a1cf	97	73.630	Astatotilapia_calliptera
ENSSPUG00000006797	A1CF	89	76.147	ENSAMXG00000018180	a1cf	93	76.147	Astyanax_mexicanus
ENSSPUG00000006797	A1CF	95	85.413	ENSBTAG00000021195	A1CF	93	88.780	Bos_taurus
ENSSPUG00000006797	A1CF	95	87.522	ENSCJAG00000005045	A1CF	95	87.852	Callithrix_jacchus
ENSSPUG00000006797	A1CF	95	87.080	ENSCAFG00000015581	A1CF	95	87.611	Canis_familiaris
ENSSPUG00000006797	A1CF	95	87.080	ENSCAFG00020026421	A1CF	98	89.865	Canis_lupus_dingo
ENSSPUG00000006797	A1CF	95	86.116	ENSCHIG00000020411	A1CF	95	86.116	Capra_hircus
ENSSPUG00000006797	A1CF	99	83.500	ENSTSYG00000001755	A1CF	100	86.453	Carlito_syrichta
ENSSPUG00000006797	A1CF	85	91.736	ENSCAPG00000017386	A1CF	90	90.283	Cavia_aperea
ENSSPUG00000006797	A1CF	95	87.170	ENSCPOG00000009807	A1CF	95	87.324	Cavia_porcellus
ENSSPUG00000006797	A1CF	95	87.676	ENSCCAG00000018168	A1CF	98	84.797	Cebus_capucinus
ENSSPUG00000006797	A1CF	99	82.943	ENSCATG00000043715	A1CF	99	84.459	Cercocebus_atys
ENSSPUG00000006797	A1CF	95	86.316	ENSCLAG00000010424	A1CF	95	87.193	Chinchilla_lanigera
ENSSPUG00000006797	A1CF	95	87.633	ENSCSAG00000007032	A1CF	95	88.516	Chlorocebus_sabaeus
ENSSPUG00000006797	A1CF	98	82.293	ENSCHOG00000009089	A1CF	98	82.462	Choloepus_hoffmanni
ENSSPUG00000006797	A1CF	95	91.150	ENSCPBG00000026464	A1CF	95	91.150	Chrysemys_picta_bellii
ENSSPUG00000006797	A1CF	95	87.633	ENSCANG00000038032	A1CF	95	88.516	Colobus_angolensis_palliatus
ENSSPUG00000006797	A1CF	95	86.292	ENSCGRG00001017413	A1cf	95	86.292	Cricetulus_griseus_chok1gshd
ENSSPUG00000006797	A1CF	95	85.413	ENSCGRG00000017332	A1cf	95	86.116	Cricetulus_griseus_crigri
ENSSPUG00000006797	A1CF	95	75.087	ENSCSEG00000002361	a1cf	95	76.132	Cynoglossus_semilaevis
ENSSPUG00000006797	A1CF	95	72.945	ENSCVAG00000010520	a1cf	95	74.829	Cyprinodon_variegatus
ENSSPUG00000006797	A1CF	95	77.408	ENSDARG00000002968	a1cf	95	79.329	Danio_rerio
ENSSPUG00000006797	A1CF	95	86.467	ENSDNOG00000002829	A1CF	95	86.467	Dasypus_novemcinctus
ENSSPUG00000006797	A1CF	82	85.417	ENSETEG00000012527	A1CF	84	85.417	Echinops_telfairi
ENSSPUG00000006797	A1CF	97	86.106	ENSEASG00005012924	A1CF	100	86.106	Equus_asinus_asinus
ENSSPUG00000006797	A1CF	95	87.215	ENSECAG00000010424	A1CF	95	87.215	Equus_caballus
ENSSPUG00000006797	A1CF	77	76.805	ENSEEUG00000000013	A1CF	98	76.805	Erinaceus_europaeus
ENSSPUG00000006797	A1CF	95	78.584	ENSELUG00000003159	a1cf	95	79.646	Esox_lucius
ENSSPUG00000006797	A1CF	94	85.816	ENSFCAG00000011179	A1CF	94	86.170	Felis_catus
ENSSPUG00000006797	A1CF	95	86.833	ENSFALG00000013183	A1CF	95	87.189	Ficedula_albicollis
ENSSPUG00000006797	A1CF	95	84.710	ENSFDAG00000019371	A1CF	95	85.413	Fukomys_damarensis
ENSSPUG00000006797	A1CF	86	72.336	ENSFHEG00000019652	a1cf	90	74.393	Fundulus_heteroclitus
ENSSPUG00000006797	A1CF	95	70.660	ENSGMOG00000018943	a1cf	95	70.660	Gadus_morhua
ENSSPUG00000006797	A1CF	99	86.735	ENSGALG00000003765	A1CF	99	87.075	Gallus_gallus
ENSSPUG00000006797	A1CF	95	67.241	ENSGAFG00000014868	a1cf	96	67.572	Gambusia_affinis
ENSSPUG00000006797	A1CF	95	73.494	ENSGACG00000010241	a1cf	95	73.966	Gasterosteus_aculeatus
ENSSPUG00000006797	A1CF	95	91.021	ENSGAGG00000016508	A1CF	98	91.021	Gopherus_agassizii
ENSSPUG00000006797	A1CF	99	84.359	ENSGGOG00000009670	A1CF	99	84.359	Gorilla_gorilla
ENSSPUG00000006797	A1CF	95	72.232	ENSHBUG00000021959	a1cf	97	73.490	Haplochromis_burtoni
ENSSPUG00000006797	A1CF	95	86.819	ENSHGLG00000008955	A1CF	95	87.698	Heterocephalus_glaber_female
ENSSPUG00000006797	A1CF	95	86.116	ENSHGLG00100000518	A1CF	95	86.995	Heterocephalus_glaber_male
ENSSPUG00000006797	A1CF	86	73.614	ENSHCOG00000017669	a1cf	95	72.089	Hippocampus_comes
ENSSPUG00000006797	A1CF	85	82.122	ENSIPUG00000010367	a1cf	92	81.871	Ictalurus_punctatus
ENSSPUG00000006797	A1CF	96	74.497	ENSKMAG00000006568	a1cf	97	75.418	Kryptolebias_marmoratus
ENSSPUG00000006797	A1CF	94	73.883	ENSLBEG00000020994	a1cf	94	75.601	Labrus_bergylta
ENSSPUG00000006797	A1CF	95	81.915	ENSLACG00000008061	A1CF	95	81.915	Latimeria_chalumnae
ENSSPUG00000006797	A1CF	95	82.155	ENSLOCG00000006302	a1cf	95	82.155	Lepisosteus_oculatus
ENSSPUG00000006797	A1CF	95	87.522	ENSLAFG00000015462	A1CF	95	87.522	Loxodonta_africana
ENSSPUG00000006797	A1CF	99	83.278	ENSMFAG00000035948	A1CF	99	84.797	Macaca_fascicularis
ENSSPUG00000006797	A1CF	99	84.396	ENSMMUG00000007077	A1CF	99	85.378	Macaca_mulatta
ENSSPUG00000006797	A1CF	99	84.140	ENSMNEG00000031454	A1CF	99	84.975	Macaca_nemestrina
ENSSPUG00000006797	A1CF	95	87.456	ENSMLEG00000037223	A1CF	99	84.459	Mandrillus_leucophaeus
ENSSPUG00000006797	A1CF	95	71.306	ENSMAMG00000010402	a1cf	97	72.420	Mastacembelus_armatus
ENSSPUG00000006797	A1CF	95	75.929	ENSMZEG00005013245	a1cf	97	76.132	Maylandia_zebra
ENSSPUG00000006797	A1CF	95	89.876	ENSMGAG00000001507	A1CF	95	90.231	Meleagris_gallopavo
ENSSPUG00000006797	A1CF	95	85.589	ENSMAUG00000007422	A1cf	95	86.116	Mesocricetus_auratus
ENSSPUG00000006797	A1CF	99	83.028	ENSMICG00000003377	A1CF	99	83.833	Microcebus_murinus
ENSSPUG00000006797	A1CF	95	85.589	ENSMOCG00000021536	A1cf	95	86.116	Microtus_ochrogaster
ENSSPUG00000006797	A1CF	95	65.679	ENSMMOG00000009422	a1cf	96	66.895	Mola_mola
ENSSPUG00000006797	A1CF	85	88.024	ENSMODG00000016478	A1CF	93	87.205	Monodelphis_domestica
ENSSPUG00000006797	A1CF	95	72.518	ENSMALG00000012992	a1cf	95	72.518	Monopterus_albus
ENSSPUG00000006797	A1CF	95	85.237	MGP_CAROLIEiJ_G0022873	A1cf	95	85.237	Mus_caroli
ENSSPUG00000006797	A1CF	95	85.237	ENSMUSG00000052595	A1cf	99	89.189	Mus_musculus
ENSSPUG00000006797	A1CF	95	84.710	MGP_PahariEiJ_G0014366	A1cf	95	84.710	Mus_pahari
ENSSPUG00000006797	A1CF	95	84.886	MGP_SPRETEiJ_G0023792	A1cf	95	84.886	Mus_spretus
ENSSPUG00000006797	A1CF	95	81.272	ENSMPUG00000016971	A1CF	95	81.272	Mustela_putorius_furo
ENSSPUG00000006797	A1CF	95	86.643	ENSMLUG00000016071	A1CF	95	86.819	Myotis_lucifugus
ENSSPUG00000006797	A1CF	95	86.995	ENSNGAG00000015136	A1cf	95	86.995	Nannospalax_galili
ENSSPUG00000006797	A1CF	95	72.572	ENSNBRG00000001712	a1cf	97	73.826	Neolamprologus_brichardi
ENSSPUG00000006797	A1CF	95	87.346	ENSNLEG00000012028	A1CF	100	84.680	Nomascus_leucogenys
ENSSPUG00000006797	A1CF	94	85.331	ENSMEUG00000015909	A1CF	100	85.689	Notamacropus_eugenii
ENSSPUG00000006797	A1CF	84	79.116	ENSOPRG00000010667	A1CF	93	78.501	Ochotona_princeps
ENSSPUG00000006797	A1CF	95	73.299	ENSONIG00000019105	a1cf	97	73.693	Oreochromis_niloticus
ENSSPUG00000006797	A1CF	74	87.927	ENSOANG00000007360	A1CF	93	87.927	Ornithorhynchus_anatinus
ENSSPUG00000006797	A1CF	95	84.035	ENSOCUG00000011587	A1CF	95	84.737	Oryctolagus_cuniculus
ENSSPUG00000006797	A1CF	95	74.828	ENSORLG00000013342	a1cf	95	74.828	Oryzias_latipes
ENSSPUG00000006797	A1CF	95	74.399	ENSORLG00020000586	a1cf	95	74.570	Oryzias_latipes_hni
ENSSPUG00000006797	A1CF	95	74.399	ENSORLG00015018569	a1cf	95	74.570	Oryzias_latipes_hsok
ENSSPUG00000006797	A1CF	95	73.675	ENSOMEG00000013531	a1cf	95	73.675	Oryzias_melastigma
ENSSPUG00000006797	A1CF	95	86.042	ENSOGAG00000012884	A1CF	95	86.749	Otolemur_garnettii
ENSSPUG00000006797	A1CF	95	86.292	ENSOARG00000013695	A1CF	95	86.292	Ovis_aries
ENSSPUG00000006797	A1CF	99	84.526	ENSPPAG00000028115	A1CF	94	91.416	Pan_paniscus
ENSSPUG00000006797	A1CF	99	82.770	ENSPPRG00000012180	A1CF	99	83.108	Panthera_pardus
ENSSPUG00000006797	A1CF	95	86.042	ENSPTIG00000021223	A1CF	95	86.396	Panthera_tigris_altaica
ENSSPUG00000006797	A1CF	95	87.852	ENSPTRG00000002508	A1CF	100	86.059	Pan_troglodytes
ENSSPUG00000006797	A1CF	99	83.278	ENSPANG00000021988	A1CF	99	84.797	Papio_anubis
ENSSPUG00000006797	A1CF	95	78.947	ENSPKIG00000025176	a1cf	95	79.298	Paramormyrops_kingsleyae
ENSSPUG00000006797	A1CF	95	89.027	ENSPSIG00000010318	A1CF	95	89.027	Pelodiscus_sinensis
ENSSPUG00000006797	A1CF	93	66.004	ENSPMGG00000013359	a1cf	94	67.145	Periophthalmus_magnuspinnatus
ENSSPUG00000006797	A1CF	95	86.995	ENSPEMG00000015021	A1cf	95	86.995	Peromyscus_maniculatus_bairdii
ENSSPUG00000006797	A1CF	95	85.284	ENSPCIG00000002175	A1CF	95	85.816	Phascolarctos_cinereus
ENSSPUG00000006797	A1CF	95	74.320	ENSPFOG00000007437	-	97	75.630	Poecilia_formosa
ENSSPUG00000006797	A1CF	95	74.490	ENSPFOG00000006683	a1cf	95	76.621	Poecilia_formosa
ENSSPUG00000006797	A1CF	95	73.129	ENSPLAG00000000026	a1cf	97	74.454	Poecilia_latipinna
ENSSPUG00000006797	A1CF	95	73.129	ENSPLAG00000001210	-	97	74.454	Poecilia_latipinna
ENSSPUG00000006797	A1CF	95	66.041	ENSPMEG00000000921	a1cf	95	67.925	Poecilia_mexicana
ENSSPUG00000006797	A1CF	95	67.235	ENSPMEG00000015529	-	95	69.125	Poecilia_mexicana
ENSSPUG00000006797	A1CF	95	74.490	ENSPREG00000016298	a1cf	95	76.410	Poecilia_reticulata
ENSSPUG00000006797	A1CF	95	85.940	ENSPPYG00000002819	A1CF	95	86.819	Pongo_abelii
ENSSPUG00000006797	A1CF	79	68.143	ENSPCAG00000006463	A1CF	70	77.419	Procavia_capensis
ENSSPUG00000006797	A1CF	95	86.140	ENSPCOG00000024172	A1CF	95	86.842	Propithecus_coquereli
ENSSPUG00000006797	A1CF	95	73.595	ENSPNYG00000017944	a1cf	97	74.832	Pundamilia_nyererei
ENSSPUG00000006797	A1CF	96	76.792	ENSPNAG00000007704	a1cf	97	76.792	Pygocentrus_nattereri
ENSSPUG00000006797	A1CF	95	84.183	ENSRNOG00000033195	A1cf	95	84.183	Rattus_norvegicus
ENSSPUG00000006797	A1CF	95	81.162	ENSRBIG00000042892	A1CF	100	86.078	Rhinopithecus_bieti
ENSSPUG00000006797	A1CF	95	87.809	ENSRROG00000041398	A1CF	99	87.522	Rhinopithecus_roxellana
ENSSPUG00000006797	A1CF	99	83.775	ENSSBOG00000021930	A1CF	100	85.965	Saimiri_boliviensis_boliviensis
ENSSPUG00000006797	A1CF	95	86.195	ENSSHAG00000005096	A1CF	95	86.219	Sarcophilus_harrisii
ENSSPUG00000006797	A1CF	95	76.531	ENSSFOG00015011774	a1cf	95	78.261	Scleropages_formosus
ENSSPUG00000006797	A1CF	95	74.830	ENSSMAG00000013271	a1cf	95	75.726	Scophthalmus_maximus
ENSSPUG00000006797	A1CF	95	74.739	ENSSDUG00000013930	a1cf	95	76.132	Seriola_dumerili
ENSSPUG00000006797	A1CF	95	68.977	ENSSLDG00000004290	a1cf	95	69.324	Seriola_lalandi_dorsalis
ENSSPUG00000006797	A1CF	99	73.544	ENSSARG00000005940	A1CF	99	74.043	Sorex_araneus
ENSSPUG00000006797	A1CF	95	87.698	ENSSSCG00000010431	A1CF	95	87.698	Sus_scrofa
ENSSPUG00000006797	A1CF	95	87.368	ENSTGUG00000005090	A1CF	95	87.544	Taeniopygia_guttata
ENSSPUG00000006797	A1CF	97	72.910	ENSTRUG00000001982	a1cf	97	72.910	Takifugu_rubripes
ENSSPUG00000006797	A1CF	95	74.533	ENSTNIG00000003580	a1cf	97	74.372	Tetraodon_nigroviridis
ENSSPUG00000006797	A1CF	99	78.319	ENSTTRG00000013190	A1CF	99	78.319	Tursiops_truncatus
ENSSPUG00000006797	A1CF	95	85.866	ENSUAMG00000020065	A1CF	95	85.866	Ursus_americanus
ENSSPUG00000006797	A1CF	95	87.411	ENSUMAG00000011162	A1CF	97	87.657	Ursus_maritimus
ENSSPUG00000006797	A1CF	86	83.365	ENSVPAG00000006130	A1CF	86	83.365	Vicugna_pacos
ENSSPUG00000006797	A1CF	95	86.372	ENSVVUG00000002504	A1CF	94	87.938	Vulpes_vulpes
ENSSPUG00000006797	A1CF	95	79.255	ENSXETG00000006611	a1cf	95	79.255	Xenopus_tropicalis
ENSSPUG00000006797	A1CF	95	74.486	ENSXCOG00000003302	a1cf	95	75.904	Xiphophorus_couchianus
ENSSPUG00000006797	A1CF	95	75.685	ENSXMAG00000016703	a1cf	95	77.108	Xiphophorus_maculatus