EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000007152 (Gene tree)
Gene ID: -
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 130175 bases
Position: chrQEPC01008384.1:2976099-3106273
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000009189	EST1	PF10374.9	5.2e-14	1	1
ENSSPUP00000009189	EST1_DNA_bind	PF10373.9	1.7e-57	1	1
ENSSPUP00000009189	PIN_4	PF13638.6	7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000009808	SMG6-201	4417	-	ENSSPUP00000009189	1410 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000007152's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000007152's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000007152	SMG6	99	69.547	ENSG00000070366	SMG6	100	81.518	Homo_sapiens
ENSSPUG00000007152	SMG6	89	52.303	ENSAPOG00000019448	smg6	79	53.132	Acanthochromis_polyacanthus
ENSSPUG00000007152	SMG6	99	70.601	ENSAMEG00000007632	SMG6	99	70.531	Ailuropoda_melanoleuca
ENSSPUG00000007152	SMG6	74	56.634	ENSACIG00000012997	smg6	83	52.442	Amphilophus_citrinellus
ENSSPUG00000007152	SMG6	89	51.929	ENSAOCG00000002630	smg6	79	52.388	Amphiprion_ocellaris
ENSSPUG00000007152	SMG6	89	51.929	ENSAPEG00000019101	smg6	79	52.388	Amphiprion_percula
ENSSPUG00000007152	SMG6	87	53.343	ENSATEG00000006483	smg6	77	53.555	Anabas_testudineus
ENSSPUG00000007152	SMG6	87	62.954	ENSACAG00000011783	SMG6	99	63.357	Anolis_carolinensis
ENSSPUG00000007152	SMG6	99	69.944	ENSANAG00000035760	SMG6	99	69.944	Aotus_nancymaae
ENSSPUG00000007152	SMG6	89	50.258	ENSACLG00000005288	smg6	84	52.241	Astatotilapia_calliptera
ENSSPUG00000007152	SMG6	73	60.571	ENSAMXG00000017326	smg6	98	50.990	Astyanax_mexicanus
ENSSPUG00000007152	SMG6	99	70.871	ENSBTAG00000000267	SMG6	99	70.851	Bos_taurus
ENSSPUG00000007152	SMG6	99	69.944	ENSCJAG00000001820	SMG6	99	69.805	Callithrix_jacchus
ENSSPUG00000007152	SMG6	99	70.308	ENSCAFG00000019260	SMG6	99	70.378	Canis_familiaris
ENSSPUG00000007152	SMG6	99	70.308	ENSCAFG00020009770	SMG6	99	70.378	Canis_lupus_dingo
ENSSPUG00000007152	SMG6	99	70.112	ENSCHIG00000021998	SMG6	99	70.182	Capra_hircus
ENSSPUG00000007152	SMG6	99	69.644	ENSTSYG00000003406	SMG6	100	81.323	Carlito_syrichta
ENSSPUG00000007152	SMG6	89	71.845	ENSCAPG00000016197	SMG6	99	71.059	Cavia_aperea
ENSSPUG00000007152	SMG6	99	68.689	ENSCPOG00000014878	SMG6	98	79.828	Cavia_porcellus
ENSSPUG00000007152	SMG6	99	70.035	ENSCCAG00000035801	SMG6	99	70.153	Cebus_capucinus
ENSSPUG00000007152	SMG6	99	70.494	ENSCATG00000031956	SMG6	99	70.494	Cercocebus_atys
ENSSPUG00000007152	SMG6	99	69.562	ENSCLAG00000006748	SMG6	93	82.063	Chinchilla_lanigera
ENSSPUG00000007152	SMG6	99	70.265	ENSCSAG00000013800	SMG6	99	70.265	Chlorocebus_sabaeus
ENSSPUG00000007152	SMG6	50	88.060	ENSCHOG00000005024	-	64	88.060	Choloepus_hoffmanni
ENSSPUG00000007152	SMG6	99	78.701	ENSCPBG00000020369	SMG6	99	78.267	Chrysemys_picta_bellii
ENSSPUG00000007152	SMG6	98	70.706	ENSCANG00000031764	SMG6	100	81.748	Colobus_angolensis_palliatus
ENSSPUG00000007152	SMG6	54	58.157	ENSCGRG00001019595	Smg6	99	63.415	Cricetulus_griseus_chok1gshd
ENSSPUG00000007152	SMG6	98	63.404	ENSCGRG00000007782	Smg6	99	64.475	Cricetulus_griseus_crigri
ENSSPUG00000007152	SMG6	94	53.840	ENSCSEG00000012757	smg6	86	54.180	Cynoglossus_semilaevis
ENSSPUG00000007152	SMG6	72	56.718	ENSCVAG00000012789	smg6	74	53.312	Cyprinodon_variegatus
ENSSPUG00000007152	SMG6	99	54.259	ENSDARG00000100481	smg6	99	54.803	Danio_rerio
ENSSPUG00000007152	SMG6	99	69.284	ENSDNOG00000048283	SMG6	99	69.284	Dasypus_novemcinctus
ENSSPUG00000007152	SMG6	99	66.690	ENSDORG00000016614	Smg6	99	82.609	Dipodomys_ordii
ENSSPUG00000007152	SMG6	93	92.857	ENSETEG00000016790	SMG6	93	92.857	Echinops_telfairi
ENSSPUG00000007152	SMG6	65	52.038	ENSEBUG00000005059	smg6	68	48.934	Eptatretus_burgeri
ENSSPUG00000007152	SMG6	99	70.337	ENSEASG00005009318	SMG6	99	70.407	Equus_asinus_asinus
ENSSPUG00000007152	SMG6	99	70.196	ENSECAG00000006519	SMG6	99	70.266	Equus_caballus
ENSSPUG00000007152	SMG6	99	61.107	ENSEEUG00000003493	SMG6	99	61.247	Erinaceus_europaeus
ENSSPUG00000007152	SMG6	72	57.453	ENSELUG00000005934	smg6	70	53.408	Esox_lucius
ENSSPUG00000007152	SMG6	99	70.399	ENSFCAG00000028817	SMG6	99	70.469	Felis_catus
ENSSPUG00000007152	SMG6	98	76.648	ENSFALG00000006538	SMG6	99	76.862	Ficedula_albicollis
ENSSPUG00000007152	SMG6	99	69.295	ENSFDAG00000015106	SMG6	100	76.423	Fukomys_damarensis
ENSSPUG00000007152	SMG6	83	53.228	ENSFHEG00000013282	smg6	74	53.470	Fundulus_heteroclitus
ENSSPUG00000007152	SMG6	62	66.509	ENSGMOG00000019077	smg6	68	66.509	Gadus_morhua
ENSSPUG00000007152	SMG6	99	76.187	ENSGALG00000003108	SMG6	98	76.117	Gallus_gallus
ENSSPUG00000007152	SMG6	98	53.614	ENSGAFG00000000379	smg6	89	54.408	Gambusia_affinis
ENSSPUG00000007152	SMG6	90	53.846	ENSGACG00000020521	smg6	99	54.148	Gasterosteus_aculeatus
ENSSPUG00000007152	SMG6	98	78.255	ENSGAGG00000025617	SMG6	99	78.255	Gopherus_agassizii
ENSSPUG00000007152	SMG6	99	69.895	ENSGGOG00000017156	SMG6	99	69.895	Gorilla_gorilla
ENSSPUG00000007152	SMG6	89	50.480	ENSHBUG00000021311	smg6	74	54.154	Haplochromis_burtoni
ENSSPUG00000007152	SMG6	99	69.193	ENSHGLG00000012882	SMG6	94	81.250	Heterocephalus_glaber_female
ENSSPUG00000007152	SMG6	99	69.332	ENSHGLG00100017815	SMG6	94	81.250	Heterocephalus_glaber_male
ENSSPUG00000007152	SMG6	72	56.543	ENSHCOG00000008761	smg6	83	57.252	Hippocampus_comes
ENSSPUG00000007152	SMG6	84	53.895	ENSIPUG00000012493	smg6	76	54.445	Ictalurus_punctatus
ENSSPUG00000007152	SMG6	99	70.404	ENSSTOG00000028127	SMG6	94	82.589	Ictidomys_tridecemlineatus
ENSSPUG00000007152	SMG6	78	64.330	ENSJJAG00000015367	Smg6	95	62.947	Jaculus_jaculus
ENSSPUG00000007152	SMG6	89	51.836	ENSKMAG00000000279	smg6	79	52.174	Kryptolebias_marmoratus
ENSSPUG00000007152	SMG6	85	52.615	ENSLBEG00000002184	smg6	75	53.185	Labrus_bergylta
ENSSPUG00000007152	SMG6	55	56.413	ENSLACG00000000806	-	97	57.534	Latimeria_chalumnae
ENSSPUG00000007152	SMG6	99	69.735	ENSLAFG00000001261	SMG6	99	69.735	Loxodonta_africana
ENSSPUG00000007152	SMG6	99	70.404	ENSMFAG00000003394	SMG6	99	70.404	Macaca_fascicularis
ENSSPUG00000007152	SMG6	99	70.334	ENSMMUG00000023161	SMG6	99	70.334	Macaca_mulatta
ENSSPUG00000007152	SMG6	99	67.155	ENSMNEG00000044592	SMG6	99	67.085	Macaca_nemestrina
ENSSPUG00000007152	SMG6	93	82.276	ENSMLEG00000029353	SMG6	99	82.463	Mandrillus_leucophaeus
ENSSPUG00000007152	SMG6	84	54.616	ENSMAMG00000020119	smg6	80	54.440	Mastacembelus_armatus
ENSSPUG00000007152	SMG6	89	50.221	ENSMZEG00005024736	smg6	78	52.753	Maylandia_zebra
ENSSPUG00000007152	SMG6	71	71.568	ENSMGAG00000005401	-	97	71.860	Meleagris_gallopavo
ENSSPUG00000007152	SMG6	99	70.633	ENSMICG00000012913	SMG6	99	70.633	Microcebus_murinus
ENSSPUG00000007152	SMG6	87	52.297	ENSMMOG00000010883	smg6	99	46.779	Mola_mola
ENSSPUG00000007152	SMG6	99	70.938	ENSMODG00000010622	SMG6	99	70.798	Monodelphis_domestica
ENSSPUG00000007152	SMG6	84	53.005	ENSMALG00000001106	smg6	73	54.176	Monopterus_albus
ENSSPUG00000007152	SMG6	99	69.526	MGP_CAROLIEiJ_G0016729	Smg6	96	80.519	Mus_caroli
ENSSPUG00000007152	SMG6	99	69.386	ENSMUSG00000038290	Smg6	94	82.222	Mus_musculus
ENSSPUG00000007152	SMG6	99	69.365	MGP_PahariEiJ_G0017866	Smg6	94	82.222	Mus_pahari
ENSSPUG00000007152	SMG6	99	69.456	MGP_SPRETEiJ_G0017572	Smg6	94	82.222	Mus_spretus
ENSSPUG00000007152	SMG6	99	70.469	ENSMPUG00000013046	SMG6	99	70.539	Mustela_putorius_furo
ENSSPUG00000007152	SMG6	99	70.147	ENSMLUG00000005739	SMG6	99	70.217	Myotis_lucifugus
ENSSPUG00000007152	SMG6	98	69.264	ENSNGAG00000007287	Smg6	94	81.250	Nannospalax_galili
ENSSPUG00000007152	SMG6	89	51.485	ENSNBRG00000009511	smg6	85	52.122	Neolamprologus_brichardi
ENSSPUG00000007152	SMG6	98	70.471	ENSNLEG00000017171	SMG6	100	81.518	Nomascus_leucogenys
ENSSPUG00000007152	SMG6	98	69.534	ENSMEUG00000015804	SMG6	99	69.534	Notamacropus_eugenii
ENSSPUG00000007152	SMG6	56	81.818	ENSOPRG00000000579	SMG6	91	70.089	Ochotona_princeps
ENSSPUG00000007152	SMG6	99	63.864	ENSODEG00000008038	SMG6	99	63.864	Octodon_degus
ENSSPUG00000007152	SMG6	99	49.366	ENSONIG00000005594	smg6	99	50.764	Oreochromis_niloticus
ENSSPUG00000007152	SMG6	99	69.874	ENSOCUG00000013018	SMG6	99	69.805	Oryctolagus_cuniculus
ENSSPUG00000007152	SMG6	86	50.633	ENSORLG00000003317	smg6	79	51.763	Oryzias_latipes
ENSSPUG00000007152	SMG6	86	50.709	ENSORLG00020015343	smg6	74	52.802	Oryzias_latipes_hni
ENSSPUG00000007152	SMG6	86	50.633	ENSORLG00015020454	smg6	74	52.950	Oryzias_latipes_hsok
ENSSPUG00000007152	SMG6	73	55.595	ENSOMEG00000010838	smg6	75	52.988	Oryzias_melastigma
ENSSPUG00000007152	SMG6	99	70.133	ENSOGAG00000004483	SMG6	99	70.133	Otolemur_garnettii
ENSSPUG00000007152	SMG6	99	69.520	ENSOARG00000015076	SMG6	99	70.613	Ovis_aries
ENSSPUG00000007152	SMG6	99	70.174	ENSPPAG00000043296	SMG6	99	70.174	Pan_paniscus
ENSSPUG00000007152	SMG6	99	70.539	ENSPPRG00000014581	SMG6	99	70.609	Panthera_pardus
ENSSPUG00000007152	SMG6	98	70.765	ENSPTIG00000008925	SMG6	100	81.712	Panthera_tigris_altaica
ENSSPUG00000007152	SMG6	99	70.035	ENSPTRG00000008544	SMG6	100	81.518	Pan_troglodytes
ENSSPUG00000007152	SMG6	99	70.424	ENSPANG00000024588	SMG6	99	70.424	Papio_anubis
ENSSPUG00000007152	SMG6	88	76.461	ENSPSIG00000006660	SMG6	96	76.461	Pelodiscus_sinensis
ENSSPUG00000007152	SMG6	99	48.723	ENSPMGG00000000844	smg6	99	58.854	Periophthalmus_magnuspinnatus
ENSSPUG00000007152	SMG6	99	69.520	ENSPEMG00000020707	Smg6	95	81.250	Peromyscus_maniculatus_bairdii
ENSSPUG00000007152	SMG6	99	50.609	ENSPFOG00000012035	smg6	99	50.947	Poecilia_formosa
ENSSPUG00000007152	SMG6	72	58.530	ENSPLAG00000017660	smg6	74	54.444	Poecilia_latipinna
ENSSPUG00000007152	SMG6	72	58.861	ENSPMEG00000000258	smg6	74	54.877	Poecilia_mexicana
ENSSPUG00000007152	SMG6	83	54.444	ENSPREG00000010066	smg6	74	54.444	Poecilia_reticulata
ENSSPUG00000007152	SMG6	99	64.882	ENSPPYG00000007790	SMG6	99	64.812	Pongo_abelii
ENSSPUG00000007152	SMG6	99	66.504	ENSPCAG00000000552	SMG6	99	66.574	Procavia_capensis
ENSSPUG00000007152	SMG6	99	69.937	ENSPCOG00000020925	SMG6	99	69.937	Propithecus_coquereli
ENSSPUG00000007152	SMG6	83	71.381	ENSPVAG00000002159	SMG6	84	71.464	Pteropus_vampyrus
ENSSPUG00000007152	SMG6	89	51.635	ENSPNYG00000024151	smg6	85	51.180	Pundamilia_nyererei
ENSSPUG00000007152	SMG6	99	51.118	ENSPNAG00000015480	smg6	99	51.446	Pygocentrus_nattereri
ENSSPUG00000007152	SMG6	99	69.386	ENSRNOG00000003041	Smg6	97	78.386	Rattus_norvegicus
ENSSPUG00000007152	SMG6	99	70.334	ENSRBIG00000024746	SMG6	99	70.334	Rhinopithecus_bieti
ENSSPUG00000007152	SMG6	99	70.334	ENSRROG00000030423	SMG6	100	81.359	Rhinopithecus_roxellana
ENSSPUG00000007152	SMG6	99	70.084	ENSSBOG00000022518	SMG6	99	68.759	Saimiri_boliviensis_boliviensis
ENSSPUG00000007152	SMG6	98	71.418	ENSSHAG00000010045	SMG6	97	71.418	Sarcophilus_harrisii
ENSSPUG00000007152	SMG6	83	56.074	ENSSFOG00015005436	smg6	70	56.111	Scleropages_formosus
ENSSPUG00000007152	SMG6	83	54.646	ENSSMAG00000019777	smg6	73	54.796	Scophthalmus_maximus
ENSSPUG00000007152	SMG6	83	54.538	ENSSDUG00000016412	smg6	74	54.818	Seriola_dumerili
ENSSPUG00000007152	SMG6	80	53.528	ENSSLDG00000020747	smg6	77	53.934	Seriola_lalandi_dorsalis
ENSSPUG00000007152	SMG6	84	53.751	ENSSPAG00000015633	smg6	75	54.286	Stegastes_partitus
ENSSPUG00000007152	SMG6	99	70.412	ENSSSCG00000017826	SMG6	99	70.482	Sus_scrofa
ENSSPUG00000007152	SMG6	99	75.279	ENSTGUG00000005836	SMG6	99	75.349	Taeniopygia_guttata
ENSSPUG00000007152	SMG6	97	48.974	ENSTRUG00000000358	smg6	99	47.693	Takifugu_rubripes
ENSSPUG00000007152	SMG6	99	49.467	ENSTNIG00000016164	smg6	99	49.634	Tetraodon_nigroviridis
ENSSPUG00000007152	SMG6	99	66.853	ENSTBEG00000011424	SMG6	99	66.783	Tupaia_belangeri
ENSSPUG00000007152	SMG6	90	77.108	ENSTTRG00000001175	SMG6	91	77.410	Tursiops_truncatus
ENSSPUG00000007152	SMG6	99	70.740	ENSUAMG00000025152	SMG6	99	70.899	Ursus_americanus
ENSSPUG00000007152	SMG6	98	70.979	ENSUMAG00000009306	SMG6	99	71.051	Ursus_maritimus
ENSSPUG00000007152	SMG6	84	92.308	ENSVPAG00000000225	SMG6	88	92.308	Vicugna_pacos
ENSSPUG00000007152	SMG6	99	70.378	ENSVVUG00000021727	SMG6	99	70.448	Vulpes_vulpes
ENSSPUG00000007152	SMG6	98	56.879	ENSXETG00000023799	SMG6	99	57.173	Xenopus_tropicalis
ENSSPUG00000007152	SMG6	72	58.889	ENSXCOG00000009867	smg6	74	54.399	Xiphophorus_couchianus
ENSSPUG00000007152	SMG6	83	54.358	ENSXMAG00000010321	smg6	74	54.596	Xiphophorus_maculatus