EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPUG00000008550 (Gene tree)
Gene ID: -
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 102502 bases
Position: chrQEPC01007621.1:63980-166481
Accession: 20320
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000011134	RRM_1	PF00076.22	2e-32	1	2
ENSSPUP00000011134	RRM_1	PF00076.22	2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000011868	PSPC1-201	1494	-	ENSSPUP00000011134	497 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000008550's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000008550's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPUG00000008550	PSPC1	80	54.286	ENSSPUG00000003116	NONO	100	55.344

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000008550	PSPC1	89	81.064	ENSG00000121390	PSPC1	98	80.237	Homo_sapiens
ENSSPUG00000008550	PSPC1	89	60.291	ENSAPOG00000015946	pspc1	80	71.091	Acanthochromis_polyacanthus
ENSSPUG00000008550	PSPC1	99	75.816	ENSAMEG00000017420	PSPC1	99	75.283	Ailuropoda_melanoleuca
ENSSPUG00000008550	PSPC1	99	57.278	ENSACIG00000018695	pspc1	99	56.130	Amphilophus_citrinellus
ENSSPUG00000008550	PSPC1	88	59.958	ENSAOCG00000005279	pspc1	80	68.588	Amphiprion_ocellaris
ENSSPUG00000008550	PSPC1	88	60.341	ENSAPEG00000015927	pspc1	80	68.588	Amphiprion_percula
ENSSPUG00000008550	PSPC1	90	60.000	ENSATEG00000004878	pspc1	91	59.205	Anabas_testudineus
ENSSPUG00000008550	PSPC1	62	64.634	ENSAPLG00000003643	SFPQ	51	73.585	Anas_platyrhynchos
ENSSPUG00000008550	PSPC1	76	81.481	ENSAPLG00000006246	PSPC1	100	80.988	Anas_platyrhynchos
ENSSPUG00000008550	PSPC1	100	78.868	ENSACAG00000002093	PSPC1	100	78.868	Anolis_carolinensis
ENSSPUG00000008550	PSPC1	99	79.447	ENSANAG00000000059	PSPC1	99	78.641	Aotus_nancymaae
ENSSPUG00000008550	PSPC1	99	56.464	ENSACLG00000027220	pspc1	99	54.820	Astatotilapia_calliptera
ENSSPUG00000008550	PSPC1	99	56.169	ENSAMXG00000036881	pspc1	99	55.535	Astyanax_mexicanus
ENSSPUG00000008550	PSPC1	99	79.537	ENSBTAG00000003934	PSPC1	99	79.344	Bos_taurus
ENSSPUG00000008550	PSPC1	99	79.724	ENSCJAG00000004554	PSPC1	99	79.029	Callithrix_jacchus
ENSSPUG00000008550	PSPC1	99	75.385	ENSCAFG00020002009	PSPC1	99	75.283	Canis_lupus_dingo
ENSSPUG00000008550	PSPC1	99	75.283	ENSCHIG00000016708	PSPC1	99	75.094	Capra_hircus
ENSSPUG00000008550	PSPC1	75	83.590	ENSTSYG00000032882	PSPC1	93	79.419	Carlito_syrichta
ENSSPUG00000008550	PSPC1	99	74.906	ENSCPOG00000000395	PSPC1	99	74.242	Cavia_porcellus
ENSSPUG00000008550	PSPC1	99	76.008	ENSCCAG00000033498	PSPC1	99	75.283	Cebus_capucinus
ENSSPUG00000008550	PSPC1	89	80.851	ENSCATG00000036434	PSPC1	97	81.020	Cercocebus_atys
ENSSPUG00000008550	PSPC1	88	70.538	ENSCLAG00000005241	PSPC1	99	70.323	Chinchilla_lanigera
ENSSPUG00000008550	PSPC1	99	73.512	ENSCHOG00000008913	PSPC1	99	73.864	Choloepus_hoffmanni
ENSSPUG00000008550	PSPC1	99	83.588	ENSCPBG00000020859	PSPC1	99	83.206	Chrysemys_picta_bellii
ENSSPUG00000008550	PSPC1	76	85.488	ENSCANG00000018948	PSPC1	84	86.016	Colobus_angolensis_palliatus
ENSSPUG00000008550	PSPC1	99	74.719	ENSCGRG00001018368	Pspc1	99	74.532	Cricetulus_griseus_chok1gshd
ENSSPUG00000008550	PSPC1	99	74.719	ENSCGRG00000011724	Pspc1	99	74.532	Cricetulus_griseus_crigri
ENSSPUG00000008550	PSPC1	99	53.084	ENSCVAG00000007679	-	90	55.000	Cyprinodon_variegatus
ENSSPUG00000008550	PSPC1	99	56.425	ENSDARG00000006621	pspc1	100	54.785	Danio_rerio
ENSSPUG00000008550	PSPC1	99	75.432	ENSDNOG00000011078	PSPC1	99	74.811	Dasypus_novemcinctus
ENSSPUG00000008550	PSPC1	99	73.157	ENSDORG00000016050	Pspc1	99	72.159	Dipodomys_ordii
ENSSPUG00000008550	PSPC1	50	51.636	ENSEBUG00000010133	pspc1	72	51.636	Eptatretus_burgeri
ENSSPUG00000008550	PSPC1	89	49.701	ENSEBUG00000003964	-	50	71.071	Eptatretus_burgeri
ENSSPUG00000008550	PSPC1	99	75.518	ENSEASG00005000119	PSPC1	99	75.568	Equus_asinus_asinus
ENSSPUG00000008550	PSPC1	99	75.518	ENSECAG00000017286	PSPC1	99	75.568	Equus_caballus
ENSSPUG00000008550	PSPC1	76	80.328	ENSEEUG00000011288	-	72	80.328	Erinaceus_europaeus
ENSSPUG00000008550	PSPC1	99	57.117	ENSELUG00000003746	pspc1	94	64.796	Esox_lucius
ENSSPUG00000008550	PSPC1	99	75.610	ENSFCAG00000027841	PSPC1	99	75.283	Felis_catus
ENSSPUG00000008550	PSPC1	100	81.285	ENSFALG00000008750	PSPC1	100	81.096	Ficedula_albicollis
ENSSPUG00000008550	PSPC1	99	75.670	ENSFDAG00000002617	PSPC1	99	75.000	Fukomys_damarensis
ENSSPUG00000008550	PSPC1	88	58.105	ENSGMOG00000015074	pspc1	66	81.061	Gadus_morhua
ENSSPUG00000008550	PSPC1	100	81.333	ENSGALG00000017142	PSPC1	100	82.095	Gallus_gallus
ENSSPUG00000008550	PSPC1	74	60.100	ENSGAFG00000006327	pspc1	70	65.192	Gambusia_affinis
ENSSPUG00000008550	PSPC1	87	54.721	ENSGACG00000014901	pspc1	96	61.960	Gasterosteus_aculeatus
ENSSPUG00000008550	PSPC1	99	83.588	ENSGAGG00000019164	PSPC1	99	83.206	Gopherus_agassizii
ENSSPUG00000008550	PSPC1	89	80.851	ENSGGOG00000003414	PSPC1	99	75.094	Gorilla_gorilla
ENSSPUG00000008550	PSPC1	99	53.432	ENSHBUG00000001139	pspc1	99	52.142	Haplochromis_burtoni
ENSSPUG00000008550	PSPC1	99	75.283	ENSHGLG00000018811	PSPC1	99	74.621	Heterocephalus_glaber_female
ENSSPUG00000008550	PSPC1	64	84.858	ENSHGLG00100007962	PSPC1	91	84.112	Heterocephalus_glaber_male
ENSSPUG00000008550	PSPC1	71	59.221	ENSHCOG00000013251	pspc1	73	64.417	Hippocampus_comes
ENSSPUG00000008550	PSPC1	99	57.301	ENSIPUG00000013192	pspc1	99	56.747	Ictalurus_punctatus
ENSSPUG00000008550	PSPC1	99	75.816	ENSSTOG00000026833	PSPC1	99	75.000	Ictidomys_tridecemlineatus
ENSSPUG00000008550	PSPC1	99	75.048	ENSJJAG00000018334	Pspc1	99	74.480	Jaculus_jaculus
ENSSPUG00000008550	PSPC1	88	53.547	ENSKMAG00000013525	-	87	52.088	Kryptolebias_marmoratus
ENSSPUG00000008550	PSPC1	90	59.101	ENSLBEG00000004474	pspc1	80	60.287	Labrus_bergylta
ENSSPUG00000008550	PSPC1	99	67.664	ENSLACG00000010762	PSPC1	99	69.829	Latimeria_chalumnae
ENSSPUG00000008550	PSPC1	99	67.686	ENSLOCG00000010832	pspc1	99	67.816	Lepisosteus_oculatus
ENSSPUG00000008550	PSPC1	99	75.240	ENSLAFG00000010968	PSPC1	99	75.048	Loxodonta_africana
ENSSPUG00000008550	PSPC1	88	81.250	ENSMFAG00000032728	PSPC1	92	84.756	Macaca_fascicularis
ENSSPUG00000008550	PSPC1	88	81.250	ENSMMUG00000020262	PSPC1	99	75.094	Macaca_mulatta
ENSSPUG00000008550	PSPC1	88	81.250	ENSMNEG00000027401	PSPC1	99	75.094	Macaca_nemestrina
ENSSPUG00000008550	PSPC1	75	78.803	ENSMLEG00000039043	PSPC1	94	78.554	Mandrillus_leucophaeus
ENSSPUG00000008550	PSPC1	89	60.768	ENSMAMG00000004333	pspc1	90	59.034	Mastacembelus_armatus
ENSSPUG00000008550	PSPC1	99	56.464	ENSMZEG00005005726	pspc1	99	54.820	Maylandia_zebra
ENSSPUG00000008550	PSPC1	76	81.081	ENSMGAG00000015134	PSPC1	100	80.590	Meleagris_gallopavo
ENSSPUG00000008550	PSPC1	87	77.897	ENSMAUG00000021067	Pspc1	98	77.419	Mesocricetus_auratus
ENSSPUG00000008550	PSPC1	89	80.851	ENSMICG00000013970	PSPC1	99	75.379	Microcebus_murinus
ENSSPUG00000008550	PSPC1	99	75.240	ENSMOCG00000006060	Pspc1	99	74.480	Microtus_ochrogaster
ENSSPUG00000008550	PSPC1	93	45.040	ENSMMOG00000004352	pspc1	62	54.839	Mola_mola
ENSSPUG00000008550	PSPC1	81	79.814	ENSMODG00000008029	PSPC1	78	73.469	Monodelphis_domestica
ENSSPUG00000008550	PSPC1	88	62.222	ENSMALG00000008914	pspc1	89	60.129	Monopterus_albus
ENSSPUG00000008550	PSPC1	99	75.240	MGP_CAROLIEiJ_G0019341	Pspc1	84	91.837	Mus_caroli
ENSSPUG00000008550	PSPC1	99	75.432	ENSMUSG00000021938	Pspc1	83	91.837	Mus_musculus
ENSSPUG00000008550	PSPC1	99	75.240	MGP_PahariEiJ_G0030359	Pspc1	84	91.837	Mus_pahari
ENSSPUG00000008550	PSPC1	99	75.432	MGP_SPRETEiJ_G0020232	Pspc1	84	91.837	Mus_spretus
ENSSPUG00000008550	PSPC1	99	75.235	ENSMPUG00000013347	PSPC1	99	75.094	Mustela_putorius_furo
ENSSPUG00000008550	PSPC1	99	75.188	ENSMLUG00000017663	PSPC1	99	74.388	Myotis_lucifugus
ENSSPUG00000008550	PSPC1	99	75.624	ENSNGAG00000011271	Pspc1	99	74.669	Nannospalax_galili
ENSSPUG00000008550	PSPC1	74	62.850	ENSNBRG00000014059	pspc1	91	64.737	Neolamprologus_brichardi
ENSSPUG00000008550	PSPC1	89	81.064	ENSNLEG00000001294	PSPC1	99	74.953	Nomascus_leucogenys
ENSSPUG00000008550	PSPC1	69	94.500	ENSMEUG00000000476	PSPC1	78	79.151	Notamacropus_eugenii
ENSSPUG00000008550	PSPC1	89	77.391	ENSODEG00000019012	-	100	72.000	Octodon_degus
ENSSPUG00000008550	PSPC1	99	68.097	ENSODEG00000007817	-	99	71.593	Octodon_degus
ENSSPUG00000008550	PSPC1	99	54.074	ENSONIG00000012010	pspc1	99	51.750	Oreochromis_niloticus
ENSSPUG00000008550	PSPC1	90	63.636	ENSOANG00000011381	-	94	61.388	Ornithorhynchus_anatinus
ENSSPUG00000008550	PSPC1	75	78.803	ENSOANG00000009017	-	100	78.554	Ornithorhynchus_anatinus
ENSSPUG00000008550	PSPC1	89	80.769	ENSOCUG00000006153	PSPC1	99	74.811	Oryctolagus_cuniculus
ENSSPUG00000008550	PSPC1	88	59.829	ENSORLG00000004232	-	90	57.500	Oryzias_latipes
ENSSPUG00000008550	PSPC1	89	60.470	ENSORLG00020000578	PSPC1	91	57.724	Oryzias_latipes_hni
ENSSPUG00000008550	PSPC1	88	59.615	ENSORLG00015017480	pspc1	91	58.607	Oryzias_latipes_hsok
ENSSPUG00000008550	PSPC1	89	81.277	ENSOGAG00000012643	PSPC1	99	75.472	Otolemur_garnettii
ENSSPUG00000008550	PSPC1	87	80.043	ENSOARG00000014163	PSPC1	95	79.610	Ovis_aries
ENSSPUG00000008550	PSPC1	89	83.772	ENSPPAG00000009836	PSPC1	99	84.211	Pan_paniscus
ENSSPUG00000008550	PSPC1	99	75.610	ENSPPRG00000008833	PSPC1	99	75.283	Panthera_pardus
ENSSPUG00000008550	PSPC1	75	79.052	ENSPTIG00000016917	PSPC1	84	78.803	Panthera_tigris_altaica
ENSSPUG00000008550	PSPC1	81	83.894	ENSPTRG00000005677	PSPC1	90	83.841	Pan_troglodytes
ENSSPUG00000008550	PSPC1	89	80.851	ENSPANG00000001992	PSPC1	98	80.055	Papio_anubis
ENSSPUG00000008550	PSPC1	80	66.905	ENSPKIG00000003578	pspc1	89	63.368	Paramormyrops_kingsleyae
ENSSPUG00000008550	PSPC1	99	80.952	ENSPSIG00000005168	PSPC1	99	80.266	Pelodiscus_sinensis
ENSSPUG00000008550	PSPC1	58	67.247	ENSPMGG00000015135	pspc1	80	66.667	Periophthalmus_magnuspinnatus
ENSSPUG00000008550	PSPC1	99	75.432	ENSPEMG00000015214	Pspc1	99	74.719	Peromyscus_maniculatus_bairdii
ENSSPUG00000008550	PSPC1	51	48.249	ENSPMAG00000004618	pspc1	78	48.249	Petromyzon_marinus
ENSSPUG00000008550	PSPC1	89	80.597	ENSPCIG00000017680	PSPC1	99	74.621	Phascolarctos_cinereus
ENSSPUG00000008550	PSPC1	90	57.983	ENSPFOG00000003362	pspc1	91	58.774	Poecilia_formosa
ENSSPUG00000008550	PSPC1	58	66.207	ENSPLAG00000004407	-	59	46.739	Poecilia_latipinna
ENSSPUG00000008550	PSPC1	99	54.461	ENSPLAG00000011540	pspc1	90	58.774	Poecilia_latipinna
ENSSPUG00000008550	PSPC1	99	54.089	ENSPMEG00000008322	pspc1	90	58.351	Poecilia_mexicana
ENSSPUG00000008550	PSPC1	99	53.818	ENSPREG00000007786	pspc1	90	58.351	Poecilia_reticulata
ENSSPUG00000008550	PSPC1	88	81.034	ENSPPYG00000005186	PSPC1	99	75.189	Pongo_abelii
ENSSPUG00000008550	PSPC1	66	78.689	ENSPCAG00000008314	-	65	78.689	Procavia_capensis
ENSSPUG00000008550	PSPC1	89	82.495	ENSPCOG00000014364	PSPC1	99	76.402	Propithecus_coquereli
ENSSPUG00000008550	PSPC1	99	74.423	ENSPVAG00000005036	PSPC1	99	74.053	Pteropus_vampyrus
ENSSPUG00000008550	PSPC1	99	56.654	ENSPNYG00000008893	pspc1	99	54.991	Pundamilia_nyererei
ENSSPUG00000008550	PSPC1	99	56.473	ENSPNAG00000016511	pspc1	99	57.303	Pygocentrus_nattereri
ENSSPUG00000008550	PSPC1	99	75.048	ENSRNOG00000020782	Pspc1	99	74.480	Rattus_norvegicus
ENSSPUG00000008550	PSPC1	91	78.819	ENSRBIG00000036057	PSPC1	96	81.020	Rhinopithecus_bieti
ENSSPUG00000008550	PSPC1	89	81.064	ENSRROG00000036334	PSPC1	99	75.283	Rhinopithecus_roxellana
ENSSPUG00000008550	PSPC1	78	80.000	ENSSBOG00000028172	PSPC1	90	78.623	Saimiri_boliviensis_boliviensis
ENSSPUG00000008550	PSPC1	89	80.255	ENSSHAG00000004696	PSPC1	99	73.774	Sarcophilus_harrisii
ENSSPUG00000008550	PSPC1	80	68.496	ENSSFOG00015001395	pspc1	99	64.681	Scleropages_formosus
ENSSPUG00000008550	PSPC1	99	51.465	ENSSMAG00000001761	pspc1	82	65.758	Scophthalmus_maximus
ENSSPUG00000008550	PSPC1	88	58.025	ENSSDUG00000010651	pspc1	90	54.691	Seriola_dumerili
ENSSPUG00000008550	PSPC1	88	65.541	ENSSLDG00000004284	pspc1	99	57.480	Seriola_lalandi_dorsalis
ENSSPUG00000008550	PSPC1	99	75.895	ENSSARG00000000888	PSPC1	99	76.460	Sorex_araneus
ENSSPUG00000008550	PSPC1	88	57.796	ENSSPAG00000001921	pspc1	88	59.149	Stegastes_partitus
ENSSPUG00000008550	PSPC1	99	75.141	ENSSSCG00000009569	PSPC1	99	75.190	Sus_scrofa
ENSSPUG00000008550	PSPC1	89	84.188	ENSTGUG00000011295	PSPC1	100	83.761	Taeniopygia_guttata
ENSSPUG00000008550	PSPC1	88	54.644	ENSTRUG00000011335	pspc1	87	53.433	Takifugu_rubripes
ENSSPUG00000008550	PSPC1	88	55.983	ENSTNIG00000010358	pspc1	90	51.943	Tetraodon_nigroviridis
ENSSPUG00000008550	PSPC1	90	61.945	ENSTBEG00000002361	PSPC1	99	57.547	Tupaia_belangeri
ENSSPUG00000008550	PSPC1	99	75.803	ENSTTRG00000003343	PSPC1	99	75.142	Tursiops_truncatus
ENSSPUG00000008550	PSPC1	64	85.220	ENSUAMG00000012309	PSPC1	91	83.686	Ursus_americanus
ENSSPUG00000008550	PSPC1	91	78.615	ENSUMAG00000013993	PSPC1	96	80.638	Ursus_maritimus
ENSSPUG00000008550	PSPC1	75	79.052	ENSVPAG00000010029	PSPC1	100	78.803	Vicugna_pacos
ENSSPUG00000008550	PSPC1	99	75.385	ENSVVUG00000006414	PSPC1	99	76.276	Vulpes_vulpes
ENSSPUG00000008550	PSPC1	74	58.987	ENSXCOG00000017438	pspc1	92	57.975	Xiphophorus_couchianus
ENSSPUG00000008550	PSPC1	74	59.241	ENSXMAG00000007929	pspc1	92	58.228	Xiphophorus_maculatus