EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPUG00000010166 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 5950 bases
Position: chrQEPC01012541.1:2149415-2155364
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000013198	LSM	PF01423.22	9.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000014074	LSM4-201	468	-	ENSSPUP00000013198	155 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000010166's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000010166's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPUG00000010166	LSM4	72	32.432	ENSSPUG00000014285	SNRPD3	56	34.722
ENSSPUG00000010166	LSM4	62	31.313	ENSSPUG00000009631	LSM2	81	34.177

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000010166	LSM4	56	98.851	ENSG00000130520	LSM4	97	74.627	Homo_sapiens
ENSSPUG00000010166	LSM4	63	97.959	ENSAPOG00000005643	lsm4	58	100.000	Acanthochromis_polyacanthus
ENSSPUG00000010166	LSM4	57	98.864	ENSAMEG00000011162	LSM4	60	98.864	Ailuropoda_melanoleuca
ENSSPUG00000010166	LSM4	63	97.959	ENSAOCG00000006414	lsm4	59	100.000	Amphiprion_ocellaris
ENSSPUG00000010166	LSM4	63	97.959	ENSAPEG00000006238	lsm4	58	100.000	Amphiprion_percula
ENSSPUG00000010166	LSM4	63	97.959	ENSATEG00000016559	lsm4	88	75.540	Anabas_testudineus
ENSSPUG00000010166	LSM4	56	98.851	ENSANAG00000034659	LSM4	63	98.851	Aotus_nancymaae
ENSSPUG00000010166	LSM4	70	83.740	ENSACLG00000022738	lsm4	59	100.000	Astatotilapia_calliptera
ENSSPUG00000010166	LSM4	63	97.959	ENSAMXG00000016932	lsm4	61	98.851	Astyanax_mexicanus
ENSSPUG00000010166	LSM4	57	98.864	ENSBTAG00000008578	LSM4	63	98.864	Bos_taurus
ENSSPUG00000010166	LSM4	53	76.829	WBGene00003078	lsm-4	67	76.829	Caenorhabditis_elegans
ENSSPUG00000010166	LSM4	56	98.851	ENSCJAG00000014171	LSM4	63	98.851	Callithrix_jacchus
ENSSPUG00000010166	LSM4	56	98.851	ENSCAFG00000014900	LSM4	57	98.851	Canis_familiaris
ENSSPUG00000010166	LSM4	56	98.851	ENSCAFG00020012137	LSM4	63	98.851	Canis_lupus_dingo
ENSSPUG00000010166	LSM4	57	98.864	ENSCHIG00000010928	LSM4	58	98.864	Capra_hircus
ENSSPUG00000010166	LSM4	56	97.701	ENSTSYG00000030906	LSM4	63	97.701	Carlito_syrichta
ENSSPUG00000010166	LSM4	56	97.701	ENSCAPG00000014140	LSM4	63	97.701	Cavia_aperea
ENSSPUG00000010166	LSM4	56	97.701	ENSCPOG00000024117	LSM4	63	97.701	Cavia_porcellus
ENSSPUG00000010166	LSM4	56	98.851	ENSCCAG00000036308	LSM4	63	98.851	Cebus_capucinus
ENSSPUG00000010166	LSM4	56	98.851	ENSCATG00000029311	LSM4	99	75.000	Cercocebus_atys
ENSSPUG00000010166	LSM4	56	98.851	ENSCLAG00000010828	LSM4	63	98.851	Chinchilla_lanigera
ENSSPUG00000010166	LSM4	56	98.851	ENSCSAG00000005370	LSM4	63	98.851	Chlorocebus_sabaeus
ENSSPUG00000010166	LSM4	56	100.000	ENSCPBG00000012925	LSM4	93	84.848	Chrysemys_picta_bellii
ENSSPUG00000010166	LSM4	55	92.941	ENSCING00000007519	-	69	93.103	Ciona_intestinalis
ENSSPUG00000010166	LSM4	55	92.941	ENSCSAVG00000008596	-	70	93.103	Ciona_savignyi
ENSSPUG00000010166	LSM4	56	98.851	ENSCANG00000043686	LSM4	99	72.857	Colobus_angolensis_palliatus
ENSSPUG00000010166	LSM4	56	95.402	ENSCGRG00001014436	Lsm4	62	95.402	Cricetulus_griseus_chok1gshd
ENSSPUG00000010166	LSM4	56	95.402	ENSCGRG00000009398	Lsm4	63	95.402	Cricetulus_griseus_crigri
ENSSPUG00000010166	LSM4	62	96.875	ENSCSEG00000016127	lsm4	61	98.851	Cynoglossus_semilaevis
ENSSPUG00000010166	LSM4	63	96.939	ENSCVAG00000010601	lsm4	61	98.851	Cyprinodon_variegatus
ENSSPUG00000010166	LSM4	54	96.429	ENSCVAG00000021828	lsm4	56	98.630	Cyprinodon_variegatus
ENSSPUG00000010166	LSM4	63	97.959	ENSDARG00000023852	lsm4	61	100.000	Danio_rerio
ENSSPUG00000010166	LSM4	56	97.701	ENSDORG00000024225	Lsm4	63	97.701	Dipodomys_ordii
ENSSPUG00000010166	LSM4	62	81.250	FBgn0032240	CG17768	56	87.356	Drosophila_melanogaster
ENSSPUG00000010166	LSM4	63	98.980	ENSELUG00000012821	lsm4	96	74.242	Esox_lucius
ENSSPUG00000010166	LSM4	56	98.851	ENSFCAG00000040580	LSM4	63	98.851	Felis_catus
ENSSPUG00000010166	LSM4	57	100.000	ENSFALG00000009478	LSM4	93	84.962	Ficedula_albicollis
ENSSPUG00000010166	LSM4	56	98.851	ENSFDAG00000010124	LSM4	63	98.851	Fukomys_damarensis
ENSSPUG00000010166	LSM4	63	98.969	ENSGMOG00000007729	lsm4	60	100.000	Gadus_morhua
ENSSPUG00000010166	LSM4	56	100.000	ENSGALG00000003385	LSM4	93	84.848	Gallus_gallus
ENSSPUG00000010166	LSM4	70	82.927	ENSGAFG00000004903	lsm4	55	95.890	Gambusia_affinis
ENSSPUG00000010166	LSM4	61	98.936	ENSGACG00000008140	lsm4	58	100.000	Gasterosteus_aculeatus
ENSSPUG00000010166	LSM4	56	100.000	ENSGAGG00000017812	LSM4	93	84.848	Gopherus_agassizii
ENSSPUG00000010166	LSM4	56	98.851	ENSGGOG00000012914	-	99	75.000	Gorilla_gorilla
ENSSPUG00000010166	LSM4	56	98.851	ENSHGLG00000006568	LSM4	63	98.851	Heterocephalus_glaber_female
ENSSPUG00000010166	LSM4	59	97.826	ENSHGLG00100007894	LSM4	99	97.826	Heterocephalus_glaber_male
ENSSPUG00000010166	LSM4	63	97.959	ENSHCOG00000008819	lsm4	61	100.000	Hippocampus_comes
ENSSPUG00000010166	LSM4	63	98.980	ENSIPUG00000005368	Lsm4	61	100.000	Ictalurus_punctatus
ENSSPUG00000010166	LSM4	56	98.851	ENSSTOG00000016494	LSM4	63	98.851	Ictidomys_tridecemlineatus
ENSSPUG00000010166	LSM4	56	96.552	ENSJJAG00000017420	Lsm4	63	96.552	Jaculus_jaculus
ENSSPUG00000010166	LSM4	55	98.824	ENSKMAG00000005073	lsm4	60	98.851	Kryptolebias_marmoratus
ENSSPUG00000010166	LSM4	63	97.959	ENSLBEG00000027930	lsm4	58	100.000	Labrus_bergylta
ENSSPUG00000010166	LSM4	56	100.000	ENSLACG00000015861	LSM4	92	81.061	Latimeria_chalumnae
ENSSPUG00000010166	LSM4	64	96.970	ENSLOCG00000002025	lsm4	62	98.851	Lepisosteus_oculatus
ENSSPUG00000010166	LSM4	57	97.727	ENSLAFG00000017459	LSM4	63	97.727	Loxodonta_africana
ENSSPUG00000010166	LSM4	56	98.851	ENSMFAG00000031194	LSM4	99	72.857	Macaca_fascicularis
ENSSPUG00000010166	LSM4	56	98.851	ENSMMUG00000004405	LSM4	63	98.851	Macaca_mulatta
ENSSPUG00000010166	LSM4	56	98.851	ENSMNEG00000042899	LSM4	99	72.857	Macaca_nemestrina
ENSSPUG00000010166	LSM4	56	98.851	ENSMLEG00000027948	LSM4	99	75.000	Mandrillus_leucophaeus
ENSSPUG00000010166	LSM4	70	83.740	ENSMAMG00000006190	lsm4	61	100.000	Mastacembelus_armatus
ENSSPUG00000010166	LSM4	70	83.740	ENSMZEG00005016420	lsm4	60	100.000	Maylandia_zebra
ENSSPUG00000010166	LSM4	57	100.000	ENSMGAG00000004976	LSM4	94	87.218	Meleagris_gallopavo
ENSSPUG00000010166	LSM4	64	96.970	ENSMICG00000000222	LSM4	63	98.851	Microcebus_murinus
ENSSPUG00000010166	LSM4	56	95.402	ENSMOCG00000020861	Lsm4	62	95.402	Microtus_ochrogaster
ENSSPUG00000010166	LSM4	63	96.939	ENSMALG00000018159	lsm4	61	98.851	Monopterus_albus
ENSSPUG00000010166	LSM4	56	95.402	MGP_CAROLIEiJ_G0031158	Lsm4	62	95.402	Mus_caroli
ENSSPUG00000010166	LSM4	56	95.402	ENSMUSG00000031848	Lsm4	83	88.506	Mus_musculus
ENSSPUG00000010166	LSM4	56	95.402	MGP_PahariEiJ_G0021623	Lsm4	62	95.402	Mus_pahari
ENSSPUG00000010166	LSM4	56	95.402	MGP_SPRETEiJ_G0032276	Lsm4	62	95.402	Mus_spretus
ENSSPUG00000010166	LSM4	56	98.851	ENSMPUG00000015589	LSM4	63	98.851	Mustela_putorius_furo
ENSSPUG00000010166	LSM4	57	98.864	ENSMLUG00000004010	LSM4	63	98.864	Myotis_lucifugus
ENSSPUG00000010166	LSM4	56	95.402	ENSNGAG00000008644	Lsm4	63	95.402	Nannospalax_galili
ENSSPUG00000010166	LSM4	64	97.980	ENSNBRG00000022150	lsm4	54	100.000	Neolamprologus_brichardi
ENSSPUG00000010166	LSM4	57	95.455	ENSOPRG00000005575	LSM4	61	97.260	Ochotona_princeps
ENSSPUG00000010166	LSM4	56	88.506	ENSODEG00000004519	-	63	88.506	Octodon_degus
ENSSPUG00000010166	LSM4	56	98.851	ENSODEG00000020549	-	63	98.851	Octodon_degus
ENSSPUG00000010166	LSM4	70	83.740	ENSONIG00000012724	lsm4	59	100.000	Oreochromis_niloticus
ENSSPUG00000010166	LSM4	71	93.860	ENSOANG00000007434	LSM4	98	93.860	Ornithorhynchus_anatinus
ENSSPUG00000010166	LSM4	70	82.927	ENSORLG00000008391	lsm4	60	98.851	Oryzias_latipes
ENSSPUG00000010166	LSM4	70	82.927	ENSORLG00020014829	lsm4	60	98.851	Oryzias_latipes_hni
ENSSPUG00000010166	LSM4	70	82.927	ENSORLG00015010205	lsm4	60	98.851	Oryzias_latipes_hsok
ENSSPUG00000010166	LSM4	70	82.927	ENSOMEG00000003606	lsm4	60	98.851	Oryzias_melastigma
ENSSPUG00000010166	LSM4	65	97.000	ENSOGAG00000027992	LSM4	60	98.864	Otolemur_garnettii
ENSSPUG00000010166	LSM4	56	98.851	ENSOARG00000012553	LSM4	60	98.851	Ovis_aries
ENSSPUG00000010166	LSM4	56	98.851	ENSPPAG00000044045	-	63	98.851	Pan_paniscus
ENSSPUG00000010166	LSM4	56	98.851	ENSPPRG00000018264	LSM4	63	98.851	Panthera_pardus
ENSSPUG00000010166	LSM4	56	98.851	ENSPTIG00000006306	LSM4	63	98.851	Panthera_tigris_altaica
ENSSPUG00000010166	LSM4	56	98.851	ENSPTRG00000031470	LSM4	63	98.851	Pan_troglodytes
ENSSPUG00000010166	LSM4	56	98.851	ENSPANG00000014399	LSM4	99	75.000	Papio_anubis
ENSSPUG00000010166	LSM4	64	96.970	ENSPKIG00000006154	lsm4	62	100.000	Paramormyrops_kingsleyae
ENSSPUG00000010166	LSM4	56	100.000	ENSPSIG00000012358	LSM4	64	100.000	Pelodiscus_sinensis
ENSSPUG00000010166	LSM4	56	95.402	ENSPEMG00000001358	Lsm4	62	95.402	Peromyscus_maniculatus_bairdii
ENSSPUG00000010166	LSM4	68	95.238	ENSPLAG00000016267	lsm4	61	100.000	Poecilia_latipinna
ENSSPUG00000010166	LSM4	71	85.000	ENSPMEG00000016378	lsm4	63	100.000	Poecilia_mexicana
ENSSPUG00000010166	LSM4	56	98.851	ENSPPYG00000009736	LSM4	63	98.851	Pongo_abelii
ENSSPUG00000010166	LSM4	64	96.970	ENSPCOG00000019837	LSM4	63	98.851	Propithecus_coquereli
ENSSPUG00000010166	LSM4	56	98.851	ENSPVAG00000015383	LSM4	63	98.851	Pteropus_vampyrus
ENSSPUG00000010166	LSM4	70	83.740	ENSPNYG00000016794	lsm4	60	100.000	Pundamilia_nyererei
ENSSPUG00000010166	LSM4	63	98.980	ENSPNAG00000016598	lsm4	65	100.000	Pygocentrus_nattereri
ENSSPUG00000010166	LSM4	56	95.402	ENSRNOG00000019572	Lsm4	62	95.402	Rattus_norvegicus
ENSSPUG00000010166	LSM4	56	98.851	ENSRBIG00000024717	LSM4	99	74.286	Rhinopithecus_bieti
ENSSPUG00000010166	LSM4	56	98.851	ENSRROG00000045706	LSM4	99	74.286	Rhinopithecus_roxellana
ENSSPUG00000010166	LSM4	53	40.217	YER112W	LSM4	51	39.583	Saccharomyces_cerevisiae
ENSSPUG00000010166	LSM4	56	100.000	ENSSHAG00000011559	LSM4	63	100.000	Sarcophilus_harrisii
ENSSPUG00000010166	LSM4	64	96.970	ENSSFOG00015021067	lsm4	62	100.000	Scleropages_formosus
ENSSPUG00000010166	LSM4	63	96.939	ENSSMAG00000021020	lsm4	58	100.000	Scophthalmus_maximus
ENSSPUG00000010166	LSM4	63	97.959	ENSSDUG00000009588	lsm4	52	100.000	Seriola_dumerili
ENSSPUG00000010166	LSM4	63	97.959	ENSSLDG00000006827	lsm4	52	100.000	Seriola_lalandi_dorsalis
ENSSPUG00000010166	LSM4	63	97.959	ENSSPAG00000011615	lsm4	58	100.000	Stegastes_partitus
ENSSPUG00000010166	LSM4	56	98.851	ENSSSCG00000034314	LSM4	63	98.851	Sus_scrofa
ENSSPUG00000010166	LSM4	70	82.114	ENSTRUG00000021737	lsm4	61	97.701	Takifugu_rubripes
ENSSPUG00000010166	LSM4	70	82.258	ENSTNIG00000010191	lsm4	60	98.851	Tetraodon_nigroviridis
ENSSPUG00000010166	LSM4	57	98.864	ENSUAMG00000000665	LSM4	72	98.851	Ursus_americanus
ENSSPUG00000010166	LSM4	56	98.851	ENSUMAG00000009013	LSM4	63	98.851	Ursus_maritimus
ENSSPUG00000010166	LSM4	64	97.980	ENSXETG00000024933	lsm4	63	98.851	Xenopus_tropicalis