EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000010538 (Gene tree)
Gene ID: -
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 44927 bases
Position: chrQEPC01012541.1:3137821-3182747
Accession: 9962
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000013703	UPF1_Zn_bind	PF09416.10	7.6e-75	1	1
ENSSPUP00000013678	UPF1_Zn_bind	PF09416.10	8.5e-75	1	1
ENSSPUP00000013703	ResIII	PF04851.15	1.9e-05	1	1
ENSSPUP00000013678	ResIII	PF04851.15	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000014615	UPF1-202	3503	-	ENSSPUP00000013703	1055 (aa)	-	-
ENSSPUT00000014587	UPF1-201	3665	-	ENSSPUP00000013678	1109 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000010538's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000010538's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000010538	UPF1	100	97.051	ENSG00000005007	UPF1	100	97.051	Homo_sapiens
ENSSPUG00000010538	UPF1	100	91.839	ENSAPOG00000023773	upf1	100	91.928	Acanthochromis_polyacanthus
ENSSPUG00000010538	UPF1	100	93.076	ENSAPOG00000010916	-	100	93.076	Acanthochromis_polyacanthus
ENSSPUG00000010538	UPF1	100	96.444	ENSAMEG00000011474	UPF1	100	96.444	Ailuropoda_melanoleuca
ENSSPUG00000010538	UPF1	92	94.829	ENSACIG00000010985	-	100	94.927	Amphilophus_citrinellus
ENSSPUG00000010538	UPF1	100	92.065	ENSACIG00000019949	upf1	100	92.011	Amphilophus_citrinellus
ENSSPUG00000010538	UPF1	100	93.076	ENSAOCG00000006352	-	100	93.076	Amphiprion_ocellaris
ENSSPUG00000010538	UPF1	100	91.351	ENSAOCG00000018519	upf1	100	91.918	Amphiprion_ocellaris
ENSSPUG00000010538	UPF1	100	91.351	ENSAPEG00000016344	upf1	100	91.918	Amphiprion_percula
ENSSPUG00000010538	UPF1	100	93.076	ENSAPEG00000006292	-	100	93.076	Amphiprion_percula
ENSSPUG00000010538	UPF1	100	93.255	ENSATEG00000016606	-	100	93.255	Anabas_testudineus
ENSSPUG00000010538	UPF1	100	90.691	ENSATEG00000017867	upf1	100	91.489	Anabas_testudineus
ENSSPUG00000010538	UPF1	94	98.577	ENSAPLG00000009175	UPF1	100	98.577	Anas_platyrhynchos
ENSSPUG00000010538	UPF1	94	96.384	ENSANAG00000024107	UPF1	95	96.384	Aotus_nancymaae
ENSSPUG00000010538	UPF1	100	91.794	ENSACLG00000007181	upf1	100	91.741	Astatotilapia_calliptera
ENSSPUG00000010538	UPF1	100	92.806	ENSACLG00000022630	-	100	92.716	Astatotilapia_calliptera
ENSSPUG00000010538	UPF1	100	93.711	ENSAMXG00000042187	upf1	100	94.160	Astyanax_mexicanus
ENSSPUG00000010538	UPF1	100	96.283	ENSBTAG00000020922	UPF1	100	96.283	Bos_taurus
ENSSPUG00000010538	UPF1	89	51.091	WBGene00004880	smg-2	95	48.863	Caenorhabditis_elegans
ENSSPUG00000010538	UPF1	100	96.106	ENSCJAG00000019627	UPF1	100	96.106	Callithrix_jacchus
ENSSPUG00000010538	UPF1	100	96.283	ENSCAFG00000014578	UPF1	100	96.283	Canis_familiaris
ENSSPUG00000010538	UPF1	100	97.230	ENSCAFG00020012347	UPF1	100	97.230	Canis_lupus_dingo
ENSSPUG00000010538	UPF1	100	97.230	ENSCHIG00000011018	UPF1	100	97.230	Capra_hircus
ENSSPUG00000010538	UPF1	96	96.179	ENSTSYG00000008877	UPF1	99	96.179	Carlito_syrichta
ENSSPUG00000010538	UPF1	94	97.336	ENSCAPG00000005758	UPF1	95	97.336	Cavia_aperea
ENSSPUG00000010538	UPF1	100	95.633	ENSCPOG00000025463	UPF1	100	95.633	Cavia_porcellus
ENSSPUG00000010538	UPF1	100	97.051	ENSCCAG00000032175	UPF1	100	97.051	Cebus_capucinus
ENSSPUG00000010538	UPF1	94	97.621	ENSCATG00000040306	UPF1	98	97.621	Cercocebus_atys
ENSSPUG00000010538	UPF1	96	95.926	ENSCLAG00000004037	UPF1	99	97.716	Chinchilla_lanigera
ENSSPUG00000010538	UPF1	100	97.051	ENSCSAG00000005276	UPF1	100	97.051	Chlorocebus_sabaeus
ENSSPUG00000010538	UPF1	100	98.473	ENSCPBG00000012513	UPF1	100	98.473	Chrysemys_picta_bellii
ENSSPUG00000010538	UPF1	81	78.382	ENSCING00000021399	-	99	78.497	Ciona_intestinalis
ENSSPUG00000010538	UPF1	99	72.014	ENSCSAVG00000006533	-	99	72.371	Ciona_savignyi
ENSSPUG00000010538	UPF1	95	96.632	ENSCANG00000029819	UPF1	99	96.632	Colobus_angolensis_palliatus
ENSSPUG00000010538	UPF1	100	96.948	ENSCGRG00001021067	Upf1	100	96.948	Cricetulus_griseus_chok1gshd
ENSSPUG00000010538	UPF1	95	96.168	ENSCGRG00000013480	Upf1	99	96.168	Cricetulus_griseus_crigri
ENSSPUG00000010538	UPF1	100	93.159	ENSCSEG00000016159	-	100	93.069	Cynoglossus_semilaevis
ENSSPUG00000010538	UPF1	100	86.960	ENSCSEG00000017239	upf1	100	86.601	Cynoglossus_semilaevis
ENSSPUG00000010538	UPF1	100	92.806	ENSCVAG00000010561	upf1	100	92.716	Cyprinodon_variegatus
ENSSPUG00000010538	UPF1	100	93.621	ENSDARG00000016302	upf1	100	94.070	Danio_rerio
ENSSPUG00000010538	UPF1	95	93.738	ENSDORG00000009984	Upf1	95	94.677	Dipodomys_ordii
ENSSPUG00000010538	UPF1	90	71.533	FBgn0030354	Upf1	84	68.359	Drosophila_melanogaster
ENSSPUG00000010538	UPF1	58	86.371	ENSEBUG00000010069	upf1	96	86.207	Eptatretus_burgeri
ENSSPUG00000010538	UPF1	100	97.140	ENSEASG00005006549	UPF1	100	97.140	Equus_asinus_asinus
ENSSPUG00000010538	UPF1	100	97.140	ENSECAG00000010639	UPF1	100	97.140	Equus_caballus
ENSSPUG00000010538	UPF1	100	92.315	ENSELUG00000012916	-	100	92.232	Esox_lucius
ENSSPUG00000010538	UPF1	100	91.226	ENSELUG00000020917	upf1	100	91.495	Esox_lucius
ENSSPUG00000010538	UPF1	100	96.195	ENSFCAG00000009757	UPF1	100	96.195	Felis_catus
ENSSPUG00000010538	UPF1	96	97.570	ENSFALG00000009312	UPF1	98	97.570	Ficedula_albicollis
ENSSPUG00000010538	UPF1	96	96.022	ENSFDAG00000014816	UPF1	99	97.621	Fukomys_damarensis
ENSSPUG00000010538	UPF1	100	89.991	ENSFHEG00000006428	upf1	100	89.991	Fundulus_heteroclitus
ENSSPUG00000010538	UPF1	86	94.763	ENSFHEG00000016276	-	96	94.763	Fundulus_heteroclitus
ENSSPUG00000010538	UPF1	100	91.808	ENSGMOG00000007541	upf1	100	92.075	Gadus_morhua
ENSSPUG00000010538	UPF1	100	98.568	ENSGALG00000003220	UPF1	100	98.568	Gallus_gallus
ENSSPUG00000010538	UPF1	100	92.619	ENSGAFG00000004831	upf1	100	92.529	Gambusia_affinis
ENSSPUG00000010538	UPF1	71	90.667	ENSGAFG00000015443	-	88	93.436	Gambusia_affinis
ENSSPUG00000010538	UPF1	100	98.829	ENSGAGG00000022217	UPF1	100	98.829	Gopherus_agassizii
ENSSPUG00000010538	UPF1	94	98.750	ENSGGOG00000002608	UPF1	99	98.750	Gorilla_gorilla
ENSSPUG00000010538	UPF1	100	87.347	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSSPUG00000010538	UPF1	90	86.047	ENSHBUG00000014694	upf1	100	86.047	Haplochromis_burtoni
ENSSPUG00000010538	UPF1	100	95.841	ENSHGLG00000010900	UPF1	100	95.841	Heterocephalus_glaber_female
ENSSPUG00000010538	UPF1	95	95.202	ENSHGLG00100005904	UPF1	97	95.202	Heterocephalus_glaber_male
ENSSPUG00000010538	UPF1	100	92.079	ENSHCOG00000008918	upf1	100	93.714	Hippocampus_comes
ENSSPUG00000010538	UPF1	100	93.890	ENSIPUG00000005108	UPF1	100	94.250	Ictalurus_punctatus
ENSSPUG00000010538	UPF1	100	97.051	ENSSTOG00000009196	UPF1	100	97.051	Ictidomys_tridecemlineatus
ENSSPUG00000010538	UPF1	100	95.904	ENSJJAG00000023151	Upf1	100	95.904	Jaculus_jaculus
ENSSPUG00000010538	UPF1	100	93.076	ENSKMAG00000004962	upf1	100	92.986	Kryptolebias_marmoratus
ENSSPUG00000010538	UPF1	98	94.831	ENSLBEG00000014862	upf1	100	91.385	Labrus_bergylta
ENSSPUG00000010538	UPF1	100	92.992	ENSLBEG00000027848	-	100	92.812	Labrus_bergylta
ENSSPUG00000010538	UPF1	63	97.704	ENSLACG00000008482	UPF1	100	97.704	Latimeria_chalumnae
ENSSPUG00000010538	UPF1	100	96.130	ENSLOCG00000002072	upf1	100	96.130	Lepisosteus_oculatus
ENSSPUG00000010538	UPF1	100	95.745	ENSLAFG00000014963	UPF1	100	95.745	Loxodonta_africana
ENSSPUG00000010538	UPF1	100	96.791	ENSMFAG00000037748	UPF1	100	96.791	Macaca_fascicularis
ENSSPUG00000010538	UPF1	100	96.533	ENSMMUG00000023286	UPF1	100	96.533	Macaca_mulatta
ENSSPUG00000010538	UPF1	100	96.791	ENSMNEG00000000046	UPF1	100	96.791	Macaca_nemestrina
ENSSPUG00000010538	UPF1	94	97.716	ENSMLEG00000028404	UPF1	99	97.716	Mandrillus_leucophaeus
ENSSPUG00000010538	UPF1	100	92.183	ENSMAMG00000006231	-	100	92.633	Mastacembelus_armatus
ENSSPUG00000010538	UPF1	100	90.337	ENSMAMG00000006229	upf1	100	91.312	Mastacembelus_armatus
ENSSPUG00000010538	UPF1	100	92.916	ENSMZEG00005003489	upf1	100	91.533	Maylandia_zebra
ENSSPUG00000010538	UPF1	100	92.806	ENSMZEG00005016386	-	100	92.716	Maylandia_zebra
ENSSPUG00000010538	UPF1	94	98.099	ENSMGAG00000004745	UPF1	100	98.099	Meleagris_gallopavo
ENSSPUG00000010538	UPF1	94	97.146	ENSMAUG00000011398	Upf1	95	97.146	Mesocricetus_auratus
ENSSPUG00000010538	UPF1	100	96.962	ENSMICG00000001659	UPF1	100	96.962	Microcebus_murinus
ENSSPUG00000010538	UPF1	100	95.911	ENSMOCG00000005699	Upf1	100	95.911	Microtus_ochrogaster
ENSSPUG00000010538	UPF1	94	92.440	ENSMMOG00000007537	-	99	92.536	Mola_mola
ENSSPUG00000010538	UPF1	100	91.081	ENSMMOG00000007881	upf1	100	91.449	Mola_mola
ENSSPUG00000010538	UPF1	100	96.470	ENSMODG00000003689	UPF1	100	96.470	Monodelphis_domestica
ENSSPUG00000010538	UPF1	100	91.441	ENSMALG00000000144	upf1	100	91.712	Monopterus_albus
ENSSPUG00000010538	UPF1	100	91.935	ENSMALG00000018100	-	100	91.667	Monopterus_albus
ENSSPUG00000010538	UPF1	100	96.858	MGP_CAROLIEiJ_G0031142	Upf1	100	96.858	Mus_caroli
ENSSPUG00000010538	UPF1	100	96.858	ENSMUSG00000058301	Upf1	100	96.858	Mus_musculus
ENSSPUG00000010538	UPF1	100	96.858	MGP_PahariEiJ_G0021607	Upf1	100	96.858	Mus_pahari
ENSSPUG00000010538	UPF1	100	96.858	MGP_SPRETEiJ_G0032260	Upf1	100	96.858	Mus_spretus
ENSSPUG00000010538	UPF1	100	97.230	ENSMPUG00000015516	UPF1	100	97.230	Mustela_putorius_furo
ENSSPUG00000010538	UPF1	99	97.040	ENSMLUG00000012122	UPF1	99	97.040	Myotis_lucifugus
ENSSPUG00000010538	UPF1	100	95.656	ENSNGAG00000024107	Upf1	100	95.656	Nannospalax_galili
ENSSPUG00000010538	UPF1	100	90.081	ENSNBRG00000000670	upf1	100	90.036	Neolamprologus_brichardi
ENSSPUG00000010538	UPF1	100	89.419	ENSNBRG00000022069	-	100	93.683	Neolamprologus_brichardi
ENSSPUG00000010538	UPF1	94	91.912	ENSNLEG00000006062	UPF1	99	91.912	Nomascus_leucogenys
ENSSPUG00000010538	UPF1	83	95.294	ENSMEUG00000014146	-	83	95.294	Notamacropus_eugenii
ENSSPUG00000010538	UPF1	94	90.865	ENSOPRG00000014018	UPF1	99	90.865	Ochotona_princeps
ENSSPUG00000010538	UPF1	100	96.253	ENSODEG00000012426	UPF1	100	96.253	Octodon_degus
ENSSPUG00000010538	UPF1	100	92.896	ENSONIG00000012729	-	100	92.806	Oreochromis_niloticus
ENSSPUG00000010538	UPF1	98	94.229	ENSONIG00000010452	upf1	100	91.800	Oreochromis_niloticus
ENSSPUG00000010538	UPF1	100	96.454	ENSOANG00000004568	UPF1	100	96.454	Ornithorhynchus_anatinus
ENSSPUG00000010538	UPF1	100	93.255	ENSORLG00000008453	upf1	100	92.806	Oryzias_latipes
ENSSPUG00000010538	UPF1	100	93.172	ENSORLG00020014758	upf1	100	92.806	Oryzias_latipes_hni
ENSSPUG00000010538	UPF1	100	93.172	ENSORLG00015010165	upf1	100	92.806	Oryzias_latipes_hsok
ENSSPUG00000010538	UPF1	100	92.896	ENSOMEG00000003665	upf1	100	92.806	Oryzias_melastigma
ENSSPUG00000010538	UPF1	100	97.140	ENSOGAG00000012866	UPF1	100	97.140	Otolemur_garnettii
ENSSPUG00000010538	UPF1	96	94.936	ENSOARG00000010739	UPF1	100	94.843	Ovis_aries
ENSSPUG00000010538	UPF1	95	96.642	ENSPPAG00000043884	UPF1	97	96.642	Pan_paniscus
ENSSPUG00000010538	UPF1	100	96.195	ENSPPRG00000023470	UPF1	100	96.195	Panthera_pardus
ENSSPUG00000010538	UPF1	94	96.641	ENSPTIG00000010159	UPF1	99	96.641	Panthera_tigris_altaica
ENSSPUG00000010538	UPF1	100	96.791	ENSPTRG00000010721	UPF1	100	96.791	Pan_troglodytes
ENSSPUG00000010538	UPF1	100	96.791	ENSPANG00000008847	UPF1	100	96.791	Papio_anubis
ENSSPUG00000010538	UPF1	90	97.149	ENSPKIG00000006069	upf1	96	95.648	Paramormyrops_kingsleyae
ENSSPUG00000010538	UPF1	69	98.824	ENSPSIG00000009491	UPF1	100	98.824	Pelodiscus_sinensis
ENSSPUG00000010538	UPF1	100	89.856	ENSPMGG00000017327	upf1	100	89.875	Periophthalmus_magnuspinnatus
ENSSPUG00000010538	UPF1	100	96.000	ENSPEMG00000001085	Upf1	100	96.000	Peromyscus_maniculatus_bairdii
ENSSPUG00000010538	UPF1	100	87.623	ENSPMAG00000001206	upf1	100	87.444	Petromyzon_marinus
ENSSPUG00000010538	UPF1	100	97.943	ENSPCIG00000006156	UPF1	100	97.943	Phascolarctos_cinereus
ENSSPUG00000010538	UPF1	100	92.709	ENSPLAG00000016232	-	100	92.619	Poecilia_latipinna
ENSSPUG00000010538	UPF1	100	90.536	ENSPLAG00000018155	-	100	90.179	Poecilia_latipinna
ENSSPUG00000010538	UPF1	100	90.917	ENSPMEG00000011443	-	100	90.558	Poecilia_mexicana
ENSSPUG00000010538	UPF1	100	92.626	ENSPMEG00000016319	-	100	92.536	Poecilia_mexicana
ENSSPUG00000010538	UPF1	100	92.529	ENSPREG00000011247	-	100	92.439	Poecilia_reticulata
ENSSPUG00000010538	UPF1	100	90.625	ENSPREG00000009940	upf1	100	90.536	Poecilia_reticulata
ENSSPUG00000010538	UPF1	100	91.150	ENSPPYG00000009752	UPF1	100	91.150	Pongo_abelii
ENSSPUG00000010538	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSSPUG00000010538	UPF1	100	96.708	ENSPCOG00000023813	UPF1	100	96.708	Propithecus_coquereli
ENSSPUG00000010538	UPF1	72	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSSPUG00000010538	UPF1	100	92.916	ENSPNYG00000003694	upf1	100	91.533	Pundamilia_nyererei
ENSSPUG00000010538	UPF1	100	92.896	ENSPNYG00000016731	-	100	92.806	Pundamilia_nyererei
ENSSPUG00000010538	UPF1	100	93.711	ENSPNAG00000025614	upf1	100	94.160	Pygocentrus_nattereri
ENSSPUG00000010538	UPF1	100	96.858	ENSRNOG00000020134	Upf1	100	96.858	Rattus_norvegicus
ENSSPUG00000010538	UPF1	94	95.338	ENSRBIG00000013894	UPF1	98	98.795	Rhinopithecus_bieti
ENSSPUG00000010538	UPF1	95	96.632	ENSRROG00000040935	UPF1	98	98.795	Rhinopithecus_roxellana
ENSSPUG00000010538	UPF1	82	54.451	YMR080C	NAM7	84	57.038	Saccharomyces_cerevisiae
ENSSPUG00000010538	UPF1	94	97.714	ENSSBOG00000023632	UPF1	96	97.714	Saimiri_boliviensis_boliviensis
ENSSPUG00000010538	UPF1	94	98.196	ENSSHAG00000010499	UPF1	100	98.196	Sarcophilus_harrisii
ENSSPUG00000010538	UPF1	100	95.953	ENSSFOG00015021095	upf1	99	97.411	Scleropages_formosus
ENSSPUG00000010538	UPF1	100	92.902	ENSSMAG00000021018	-	100	92.902	Scophthalmus_maximus
ENSSPUG00000010538	UPF1	97	94.080	ENSSMAG00000005055	upf1	100	90.417	Scophthalmus_maximus
ENSSPUG00000010538	UPF1	97	95.062	ENSSDUG00000013320	upf1	100	91.578	Seriola_dumerili
ENSSPUG00000010538	UPF1	100	93.261	ENSSDUG00000009629	-	100	93.261	Seriola_dumerili
ENSSPUG00000010538	UPF1	100	93.261	ENSSLDG00000006878	-	100	93.261	Seriola_lalandi_dorsalis
ENSSPUG00000010538	UPF1	100	91.413	ENSSLDG00000020868	upf1	100	91.875	Seriola_lalandi_dorsalis
ENSSPUG00000010538	UPF1	100	89.829	ENSSPAG00000000003	upf1	100	89.767	Stegastes_partitus
ENSSPUG00000010538	UPF1	100	93.069	ENSSPAG00000011521	-	100	92.979	Stegastes_partitus
ENSSPUG00000010538	UPF1	100	97.140	ENSSSCG00000039301	UPF1	99	98.752	Sus_scrofa
ENSSPUG00000010538	UPF1	87	90.426	ENSTGUG00000001057	UPF1	100	95.858	Taeniopygia_guttata
ENSSPUG00000010538	UPF1	100	91.344	ENSTRUG00000000150	upf1	100	91.253	Takifugu_rubripes
ENSSPUG00000010538	UPF1	100	92.169	ENSTRUG00000005131	-	100	91.989	Takifugu_rubripes
ENSSPUG00000010538	UPF1	100	93.119	ENSTTRG00000011544	UPF1	100	93.011	Tursiops_truncatus
ENSSPUG00000010538	UPF1	100	97.140	ENSUAMG00000007093	UPF1	100	97.140	Ursus_americanus
ENSSPUG00000010538	UPF1	94	98.752	ENSUMAG00000006652	UPF1	99	99.066	Ursus_maritimus
ENSSPUG00000010538	UPF1	100	97.230	ENSVVUG00000007797	UPF1	100	97.230	Vulpes_vulpes
ENSSPUG00000010538	UPF1	100	82.379	ENSXETG00000013602	upf1	100	82.291	Xenopus_tropicalis
ENSSPUG00000010538	UPF1	97	90.689	ENSXCOG00000015275	-	96	90.223	Xiphophorus_couchianus
ENSSPUG00000010538	UPF1	93	94.568	ENSXCOG00000005764	-	100	94.568	Xiphophorus_couchianus
ENSSPUG00000010538	UPF1	100	92.446	ENSXMAG00000002540	-	100	92.356	Xiphophorus_maculatus
ENSSPUG00000010538	UPF1	100	90.991	ENSXMAG00000001703	-	100	90.541	Xiphophorus_maculatus