EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000012112 (Gene tree)
Gene ID: -
Gene Symbol: SSB
Alias: LARP3|La|La/SSB
Full Name: Sjogren syndrome antigen B
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Minus strand
Length: 9691 bases
Position: chrQEPC01003457.1:6242903-6252593
Accession: 11316
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000015673	RRM_1	PF00076.22	2.8e-13	1	1
ENSSPUP00000015679	RRM_1	PF00076.22	2.8e-13	1	1
ENSSPUP00000015673	RRM_3	PF08777.11	8.8e-28	1	1
ENSSPUP00000015679	RRM_3	PF08777.11	8.8e-28	1	1
ENSSPUP00000015673	La	PF05383.17	8e-23	1	1
ENSSPUP00000015679	La	PF05383.17	8e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000016712	SSB-201	1717	-	ENSSPUP00000015673	406 (aa)	-	-
ENSSPUT00000016718	SSB-202	1644	-	ENSSPUP00000015679	406 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000012112's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000012112's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000012112	SSB	100	76.225	ENSG00000138385	SSB	100	83.333	Homo_sapiens
ENSSPUG00000012112	SSB	99	57.598	ENSAPOG00000003448	ssb	100	57.598	Acanthochromis_polyacanthus
ENSSPUG00000012112	SSB	100	74.171	ENSAMEG00000010507	SSB	100	71.090	Ailuropoda_melanoleuca
ENSSPUG00000012112	SSB	91	58.333	ENSACIG00000001738	ssb	97	58.445	Amphilophus_citrinellus
ENSSPUG00000012112	SSB	99	57.946	ENSAOCG00000020398	ssb	100	57.843	Amphiprion_ocellaris
ENSSPUG00000012112	SSB	99	58.191	ENSAPEG00000020395	ssb	100	58.088	Amphiprion_percula
ENSSPUG00000012112	SSB	99	60.391	ENSATEG00000016884	ssb	100	60.294	Anabas_testudineus
ENSSPUG00000012112	SSB	100	78.118	ENSAPLG00000006109	SSB	100	75.708	Anas_platyrhynchos
ENSSPUG00000012112	SSB	100	71.638	ENSACAG00000017008	SSB	99	70.660	Anolis_carolinensis
ENSSPUG00000012112	SSB	100	67.402	ENSANAG00000027195	-	100	67.402	Aotus_nancymaae
ENSSPUG00000012112	SSB	99	56.049	ENSACLG00000010798	ssb	100	55.911	Astatotilapia_calliptera
ENSSPUG00000012112	SSB	98	56.373	ENSAMXG00000012606	ssb	100	57.488	Astyanax_mexicanus
ENSSPUG00000012112	SSB	100	76.658	ENSBTAG00000008716	SSB	100	76.658	Bos_taurus
ENSSPUG00000012112	SSB	73	37.748	WBGene00016653	C44E4.4	77	38.636	Caenorhabditis_elegans
ENSSPUG00000012112	SSB	100	76.167	ENSCJAG00000045073	SSB	100	76.167	Callithrix_jacchus
ENSSPUG00000012112	SSB	100	76.961	ENSCAFG00000012418	SSB	100	76.961	Canis_familiaris
ENSSPUG00000012112	SSB	100	76.961	ENSCAFG00020002900	SSB	100	76.961	Canis_lupus_dingo
ENSSPUG00000012112	SSB	100	71.675	ENSCHIG00000022196	-	100	70.443	Capra_hircus
ENSSPUG00000012112	SSB	100	76.413	ENSCHIG00000022624	-	100	76.413	Capra_hircus
ENSSPUG00000012112	SSB	100	75.921	ENSTSYG00000000097	SSB	100	75.921	Carlito_syrichta
ENSSPUG00000012112	SSB	100	77.641	ENSCPOG00000003338	SSB	100	77.641	Cavia_porcellus
ENSSPUG00000012112	SSB	100	76.167	ENSCCAG00000035147	SSB	100	76.167	Cebus_capucinus
ENSSPUG00000012112	SSB	78	68.615	ENSCATG00000036701	SSB	93	68.615	Cercocebus_atys
ENSSPUG00000012112	SSB	100	55.283	ENSCATG00000042909	-	100	55.283	Cercocebus_atys
ENSSPUG00000012112	SSB	100	77.641	ENSCLAG00000015617	-	100	77.641	Chinchilla_lanigera
ENSSPUG00000012112	SSB	100	76.167	ENSCSAG00000015200	SSB	89	76.167	Chlorocebus_sabaeus
ENSSPUG00000012112	SSB	98	69.674	ENSCSAG00000018390	-	100	69.674	Chlorocebus_sabaeus
ENSSPUG00000012112	SSB	100	78.133	ENSCHOG00000007763	SSB	100	78.133	Choloepus_hoffmanni
ENSSPUG00000012112	SSB	100	87.042	ENSCPBG00000006519	SSB	100	87.286	Chrysemys_picta_bellii
ENSSPUG00000012112	SSB	100	76.167	ENSCANG00000027695	SSB	100	76.167	Colobus_angolensis_palliatus
ENSSPUG00000012112	SSB	100	65.111	ENSCANG00000033240	-	100	65.111	Colobus_angolensis_palliatus
ENSSPUG00000012112	SSB	96	59.796	ENSCANG00000028838	-	93	59.796	Colobus_angolensis_palliatus
ENSSPUG00000012112	SSB	100	68.689	ENSCGRG00001024831	Ssb	100	68.204	Cricetulus_griseus_chok1gshd
ENSSPUG00000012112	SSB	100	68.689	ENSCGRG00000005387	Ssb	100	68.204	Cricetulus_griseus_crigri
ENSSPUG00000012112	SSB	98	57.357	ENSCSEG00000011599	ssb	99	56.608	Cynoglossus_semilaevis
ENSSPUG00000012112	SSB	99	59.169	ENSCVAG00000021558	ssb	100	58.924	Cyprinodon_variegatus
ENSSPUG00000012112	SSB	99	59.314	ENSDARG00000029252	ssb	100	58.881	Danio_rerio
ENSSPUG00000012112	SSB	100	77.396	ENSDNOG00000013450	SSB	100	77.396	Dasypus_novemcinctus
ENSSPUG00000012112	SSB	100	69.976	ENSDORG00000005543	Ssb	100	67.312	Dipodomys_ordii
ENSSPUG00000012112	SSB	81	33.431	FBgn0011638	La	66	35.821	Drosophila_melanogaster
ENSSPUG00000012112	SSB	50	81.592	ENSETEG00000004614	-	52	81.592	Echinops_telfairi
ENSSPUG00000012112	SSB	92	47.884	ENSEBUG00000001237	ssb	94	47.884	Eptatretus_burgeri
ENSSPUG00000012112	SSB	100	77.150	ENSEASG00005022835	SSB	100	77.150	Equus_asinus_asinus
ENSSPUG00000012112	SSB	100	77.396	ENSECAG00000018495	SSB	100	77.396	Equus_caballus
ENSSPUG00000012112	SSB	75	63.725	ENSEEUG00000008077	SSB	78	63.725	Erinaceus_europaeus
ENSSPUG00000012112	SSB	99	62.500	ENSELUG00000020929	ssb	100	62.654	Esox_lucius
ENSSPUG00000012112	SSB	100	76.961	ENSFCAG00000011601	SSB	100	76.961	Felis_catus
ENSSPUG00000012112	SSB	100	80.296	ENSFALG00000000930	SSB	100	80.296	Ficedula_albicollis
ENSSPUG00000012112	SSB	100	77.396	ENSFDAG00000000598	SSB	100	77.396	Fukomys_damarensis
ENSSPUG00000012112	SSB	72	56.333	ENSFHEG00000003268	ssb	94	56.721	Fundulus_heteroclitus
ENSSPUG00000012112	SSB	97	57.248	ENSGMOG00000002664	ssb	100	56.650	Gadus_morhua
ENSSPUG00000012112	SSB	100	80.835	ENSGALG00000009677	SSB	100	80.098	Gallus_gallus
ENSSPUG00000012112	SSB	99	57.598	ENSGAFG00000002749	ssb	100	58.191	Gambusia_affinis
ENSSPUG00000012112	SSB	98	56.020	ENSGACG00000005107	ssb	99	55.774	Gasterosteus_aculeatus
ENSSPUG00000012112	SSB	100	86.553	ENSGAGG00000007807	SSB	100	86.797	Gopherus_agassizii
ENSSPUG00000012112	SSB	55	71.556	ENSGGOG00000023471	-	91	72.197	Gorilla_gorilla
ENSSPUG00000012112	SSB	100	63.391	ENSGGOG00000024891	-	100	63.391	Gorilla_gorilla
ENSSPUG00000012112	SSB	99	56.049	ENSHBUG00000006584	ssb	100	55.911	Haplochromis_burtoni
ENSSPUG00000012112	SSB	100	70.488	ENSHGLG00000004478	-	100	70.488	Heterocephalus_glaber_female
ENSSPUG00000012112	SSB	100	68.796	ENSHGLG00000005832	-	100	68.796	Heterocephalus_glaber_female
ENSSPUG00000012112	SSB	100	76.087	ENSHGLG00000017580	-	100	72.947	Heterocephalus_glaber_female
ENSSPUG00000012112	SSB	100	66.830	ENSHGLG00100008767	-	100	66.830	Heterocephalus_glaber_male
ENSSPUG00000012112	SSB	100	76.087	ENSHGLG00100003084	-	100	72.947	Heterocephalus_glaber_male
ENSSPUG00000012112	SSB	98	55.779	ENSHCOG00000019011	ssb	99	56.784	Hippocampus_comes
ENSSPUG00000012112	SSB	99	59.854	ENSIPUG00000003681	SSB	100	59.420	Ictalurus_punctatus
ENSSPUG00000012112	SSB	100	76.601	ENSSTOG00000008416	SSB	100	76.601	Ictidomys_tridecemlineatus
ENSSPUG00000012112	SSB	99	55.693	ENSJJAG00000016250	-	99	55.693	Jaculus_jaculus
ENSSPUG00000012112	SSB	100	66.197	ENSJJAG00000023158	-	100	64.554	Jaculus_jaculus
ENSSPUG00000012112	SSB	99	58.435	ENSKMAG00000017317	ssb	99	58.603	Kryptolebias_marmoratus
ENSSPUG00000012112	SSB	99	58.088	ENSLBEG00000017345	ssb	100	58.088	Labrus_bergylta
ENSSPUG00000012112	SSB	99	69.042	ENSLACG00000014056	SSB	99	67.813	Latimeria_chalumnae
ENSSPUG00000012112	SSB	97	70.000	ENSLOCG00000007933	ssb	98	70.250	Lepisosteus_oculatus
ENSSPUG00000012112	SSB	100	70.118	ENSLAFG00000000867	-	100	70.283	Loxodonta_africana
ENSSPUG00000012112	SSB	100	63.547	ENSLAFG00000028909	-	100	63.300	Loxodonta_africana
ENSSPUG00000012112	SSB	74	58.940	ENSLAFG00000026721	-	99	58.940	Loxodonta_africana
ENSSPUG00000012112	SSB	100	76.167	ENSMFAG00000039066	SSB	100	76.167	Macaca_fascicularis
ENSSPUG00000012112	SSB	88	68.347	ENSMFAG00000041478	-	91	69.725	Macaca_fascicularis
ENSSPUG00000012112	SSB	99	52.346	ENSMMUG00000039889	-	100	52.346	Macaca_mulatta
ENSSPUG00000012112	SSB	100	76.167	ENSMMUG00000023051	SSB	100	76.167	Macaca_mulatta
ENSSPUG00000012112	SSB	100	65.517	ENSMMUG00000011724	-	97	65.517	Macaca_mulatta
ENSSPUG00000012112	SSB	88	68.347	ENSMNEG00000034698	-	91	69.725	Macaca_nemestrina
ENSSPUG00000012112	SSB	100	66.098	ENSMNEG00000028321	SSB	85	81.739	Macaca_nemestrina
ENSSPUG00000012112	SSB	100	54.680	ENSMLEG00000042644	-	100	53.563	Mandrillus_leucophaeus
ENSSPUG00000012112	SSB	100	76.167	ENSMLEG00000035717	SSB	100	76.167	Mandrillus_leucophaeus
ENSSPUG00000012112	SSB	99	60.784	ENSMAMG00000004800	ssb	100	60.294	Mastacembelus_armatus
ENSSPUG00000012112	SSB	99	56.049	ENSMZEG00005005749	ssb	100	55.911	Maylandia_zebra
ENSSPUG00000012112	SSB	100	80.590	ENSMGAG00000010328	SSB	100	83.495	Meleagris_gallopavo
ENSSPUG00000012112	SSB	99	70.123	ENSMICG00000033304	-	93	75.000	Microcebus_murinus
ENSSPUG00000012112	SSB	99	77.037	ENSMICG00000028252	-	99	77.037	Microcebus_murinus
ENSSPUG00000012112	SSB	100	61.425	ENSMODG00000007027	-	100	61.425	Monodelphis_domestica
ENSSPUG00000012112	SSB	100	74.820	ENSMODG00000008227	-	100	75.540	Monodelphis_domestica
ENSSPUG00000012112	SSB	100	63.882	ENSMODG00000019271	-	100	49.395	Monodelphis_domestica
ENSSPUG00000012112	SSB	89	58.266	ENSMALG00000008045	ssb	88	61.035	Monopterus_albus
ENSSPUG00000012112	SSB	100	66.351	MGP_CAROLIEiJ_G0023629	-	100	79.348	Mus_caroli
ENSSPUG00000012112	SSB	100	65.877	ENSMUSG00000068882	Ssb	100	79.348	Mus_musculus
ENSSPUG00000012112	SSB	100	65.877	MGP_PahariEiJ_G0025081	-	100	78.804	Mus_pahari
ENSSPUG00000012112	SSB	100	65.877	MGP_SPRETEiJ_G0024551	Ssb	100	79.348	Mus_spretus
ENSSPUG00000012112	SSB	100	77.396	ENSMPUG00000000785	SSB	100	77.396	Mustela_putorius_furo
ENSSPUG00000012112	SSB	100	73.223	ENSMLUG00000016316	SSB	100	70.853	Myotis_lucifugus
ENSSPUG00000012112	SSB	99	56.049	ENSNBRG00000012661	ssb	100	55.911	Neolamprologus_brichardi
ENSSPUG00000012112	SSB	100	76.167	ENSNLEG00000004958	SSB	100	76.167	Nomascus_leucogenys
ENSSPUG00000012112	SSB	100	55.746	ENSNLEG00000028754	-	100	55.990	Nomascus_leucogenys
ENSSPUG00000012112	SSB	61	85.081	ENSMEUG00000001650	-	100	85.081	Notamacropus_eugenii
ENSSPUG00000012112	SSB	53	81.290	ENSOPRG00000008475	-	75	81.290	Ochotona_princeps
ENSSPUG00000012112	SSB	93	74.868	ENSODEG00000004202	-	99	74.074	Octodon_degus
ENSSPUG00000012112	SSB	99	55.802	ENSONIG00000008776	ssb	100	55.911	Oreochromis_niloticus
ENSSPUG00000012112	SSB	100	78.133	ENSOANG00000008543	SSB	100	78.133	Ornithorhynchus_anatinus
ENSSPUG00000012112	SSB	100	76.167	ENSOCUG00000010396	SSB	100	76.167	Oryctolagus_cuniculus
ENSSPUG00000012112	SSB	99	56.355	ENSORLG00000017208	ssb	100	57.843	Oryzias_latipes
ENSSPUG00000012112	SSB	99	58.088	ENSORLG00020022574	ssb	100	58.088	Oryzias_latipes_hni
ENSSPUG00000012112	SSB	99	57.108	ENSORLG00015016592	ssb	100	57.353	Oryzias_latipes_hsok
ENSSPUG00000012112	SSB	99	59.069	ENSOMEG00000003193	ssb	100	59.951	Oryzias_melastigma
ENSSPUG00000012112	SSB	100	71.698	ENSOGAG00000029768	SSB	100	71.226	Otolemur_garnettii
ENSSPUG00000012112	SSB	100	76.658	ENSOARG00000002906	SSB	100	76.658	Ovis_aries
ENSSPUG00000012112	SSB	97	58.481	ENSPPAG00000006189	-	93	60.440	Pan_paniscus
ENSSPUG00000012112	SSB	100	61.671	ENSPPAG00000032427	-	100	73.643	Pan_paniscus
ENSSPUG00000012112	SSB	100	76.225	ENSPPAG00000042673	SSB	100	76.225	Pan_paniscus
ENSSPUG00000012112	SSB	100	76.961	ENSPPRG00000006599	SSB	100	76.961	Panthera_pardus
ENSSPUG00000012112	SSB	100	76.961	ENSPTIG00000011021	SSB	97	76.961	Panthera_tigris_altaica
ENSSPUG00000012112	SSB	100	58.824	ENSPTRG00000042880	-	100	58.824	Pan_troglodytes
ENSSPUG00000012112	SSB	100	76.225	ENSPTRG00000012620	SSB	100	76.225	Pan_troglodytes
ENSSPUG00000012112	SSB	100	76.167	ENSPANG00000007440	SSB	100	76.167	Papio_anubis
ENSSPUG00000012112	SSB	96	54.359	ENSPANG00000031877	-	92	52.185	Papio_anubis
ENSSPUG00000012112	SSB	100	55.037	ENSPANG00000034126	-	100	55.283	Papio_anubis
ENSSPUG00000012112	SSB	99	65.356	ENSPKIG00000019325	ssb	99	65.602	Paramormyrops_kingsleyae
ENSSPUG00000012112	SSB	100	84.841	ENSPSIG00000002265	SSB	93	85.086	Pelodiscus_sinensis
ENSSPUG00000012112	SSB	83	55.977	ENSPMGG00000020075	ssb	91	55.650	Periophthalmus_magnuspinnatus
ENSSPUG00000012112	SSB	99	45.921	ENSPMAG00000002982	ssb	100	46.853	Petromyzon_marinus
ENSSPUG00000012112	SSB	100	77.451	ENSPCIG00000028591	-	100	78.676	Phascolarctos_cinereus
ENSSPUG00000012112	SSB	99	58.088	ENSPFOG00000009650	ssb	100	58.088	Poecilia_formosa
ENSSPUG00000012112	SSB	99	57.843	ENSPLAG00000020498	ssb	100	58.191	Poecilia_latipinna
ENSSPUG00000012112	SSB	99	58.088	ENSPMEG00000001051	ssb	100	58.088	Poecilia_mexicana
ENSSPUG00000012112	SSB	91	60.000	ENSPREG00000003708	ssb	97	60.000	Poecilia_reticulata
ENSSPUG00000012112	SSB	100	76.167	ENSPPYG00000012919	SSB	100	76.167	Pongo_abelii
ENSSPUG00000012112	SSB	95	73.506	ENSPCAG00000010276	SSB	100	73.506	Procavia_capensis
ENSSPUG00000012112	SSB	100	66.585	ENSPCOG00000023189	-	100	66.585	Propithecus_coquereli
ENSSPUG00000012112	SSB	100	74.201	ENSPCOG00000015741	-	100	74.201	Propithecus_coquereli
ENSSPUG00000012112	SSB	86	79.310	ENSPVAG00000006615	SSB	99	79.310	Pteropus_vampyrus
ENSSPUG00000012112	SSB	99	56.049	ENSPNYG00000006444	ssb	100	55.911	Pundamilia_nyererei
ENSSPUG00000012112	SSB	98	57.635	ENSPNAG00000011708	ssb	100	57.933	Pygocentrus_nattereri
ENSSPUG00000012112	SSB	100	66.430	ENSRNOG00000007998	Ssb	100	64.403	Rattus_norvegicus
ENSSPUG00000012112	SSB	100	66.829	ENSRNOG00000011606	AABR07061825.1	100	64.976	Rattus_norvegicus
ENSSPUG00000012112	SSB	100	64.320	ENSRBIG00000041972	SSB	88	81.739	Rhinopithecus_bieti
ENSSPUG00000012112	SSB	94	64.042	ENSRBIG00000041232	-	98	64.042	Rhinopithecus_bieti
ENSSPUG00000012112	SSB	89	69.505	ENSRBIG00000041608	-	98	67.033	Rhinopithecus_bieti
ENSSPUG00000012112	SSB	100	54.634	ENSRBIG00000029918	-	100	54.634	Rhinopithecus_bieti
ENSSPUG00000012112	SSB	89	72.802	ENSRROG00000034102	-	97	68.593	Rhinopithecus_roxellana
ENSSPUG00000012112	SSB	100	62.439	ENSRROG00000007149	-	100	62.439	Rhinopithecus_roxellana
ENSSPUG00000012112	SSB	98	64.824	ENSRROG00000031684	-	100	64.824	Rhinopithecus_roxellana
ENSSPUG00000012112	SSB	100	76.167	ENSRROG00000040346	SSB	100	76.167	Rhinopithecus_roxellana
ENSSPUG00000012112	SSB	100	76.413	ENSSBOG00000027204	SSB	100	76.413	Saimiri_boliviensis_boliviensis
ENSSPUG00000012112	SSB	100	76.716	ENSSHAG00000018062	SSB	100	77.941	Sarcophilus_harrisii
ENSSPUG00000012112	SSB	99	66.990	ENSSFOG00015000550	ssb	100	67.233	Scleropages_formosus
ENSSPUG00000012112	SSB	98	55.750	ENSSMAG00000013885	ssb	99	59.840	Scophthalmus_maximus
ENSSPUG00000012112	SSB	99	60.539	ENSSDUG00000020117	ssb	100	60.294	Seriola_dumerili
ENSSPUG00000012112	SSB	99	58.272	ENSSLDG00000002525	ssb	100	58.519	Seriola_lalandi_dorsalis
ENSSPUG00000012112	SSB	95	69.792	ENSSARG00000007747	SSB	100	69.792	Sorex_araneus
ENSSPUG00000012112	SSB	98	56.543	ENSSPAG00000005696	ssb	100	56.618	Stegastes_partitus
ENSSPUG00000012112	SSB	91	71.003	ENSSSCG00000015938	SSB	98	67.920	Sus_scrofa
ENSSPUG00000012112	SSB	100	80.392	ENSTGUG00000007942	SSB	100	77.451	Taeniopygia_guttata
ENSSPUG00000012112	SSB	99	59.606	ENSTRUG00000017839	ssb	100	59.606	Takifugu_rubripes
ENSSPUG00000012112	SSB	90	60.763	ENSTNIG00000000915	ssb	100	58.667	Tetraodon_nigroviridis
ENSSPUG00000012112	SSB	83	81.739	ENSTBEG00000009056	SSB	82	81.739	Tupaia_belangeri
ENSSPUG00000012112	SSB	100	75.980	ENSTTRG00000002152	SSB	100	75.980	Tursiops_truncatus
ENSSPUG00000012112	SSB	91	79.570	ENSUAMG00000027833	SSB	98	79.570	Ursus_americanus
ENSSPUG00000012112	SSB	100	77.206	ENSUMAG00000013907	SSB	100	77.206	Ursus_maritimus
ENSSPUG00000012112	SSB	100	76.658	ENSVPAG00000007183	SSB	100	76.658	Vicugna_pacos
ENSSPUG00000012112	SSB	100	76.961	ENSVVUG00000016573	SSB	78	76.961	Vulpes_vulpes
ENSSPUG00000012112	SSB	100	58.411	ENSXETG00000025402	ssb	100	59.813	Xenopus_tropicalis
ENSSPUG00000012112	SSB	91	57.333	ENSXCOG00000019109	ssb	93	65.625	Xiphophorus_couchianus
ENSSPUG00000012112	SSB	99	57.843	ENSXMAG00000004888	ssb	100	57.843	Xiphophorus_maculatus