EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000012263 (Gene tree)
Gene ID: -
Gene Symbol: EXOSC1
Alias: CGI-108|CSL4|Csl4p|SKI4|Ski4p|hCsl4p|p13
Full Name: exosome component 1
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Minus strand
Length: 2965 bases
Position: chrQEPC01008216.1:5191496-5194460
Accession: 17286
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000015875	EXOSC1	PF10447.9	1.2e-14	1	1
ENSSPUP00000015875	ECR1_N	PF14382.6	1.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000016922	EXOSC1-201	991	-	ENSSPUP00000015875	195 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000012263's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000012263's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000012263	EXOSC1	99	84.536	ENSG00000171311	EXOSC1	99	84.536	Homo_sapiens
ENSSPUG00000012263	EXOSC1	98	75.393	ENSAPOG00000007822	exosc1	98	75.393	Acanthochromis_polyacanthus
ENSSPUG00000012263	EXOSC1	99	82.990	ENSAMEG00000000129	EXOSC1	99	82.990	Ailuropoda_melanoleuca
ENSSPUG00000012263	EXOSC1	96	72.872	ENSACIG00000018956	exosc1	92	72.872	Amphilophus_citrinellus
ENSSPUG00000012263	EXOSC1	98	75.393	ENSAOCG00000010699	exosc1	98	75.393	Amphiprion_ocellaris
ENSSPUG00000012263	EXOSC1	92	65.363	ENSAPEG00000012690	exosc1	96	65.363	Amphiprion_percula
ENSSPUG00000012263	EXOSC1	98	74.869	ENSATEG00000018683	exosc1	98	74.869	Anabas_testudineus
ENSSPUG00000012263	EXOSC1	97	85.789	ENSACAG00000002101	EXOSC1	97	85.789	Anolis_carolinensis
ENSSPUG00000012263	EXOSC1	99	83.505	ENSANAG00000034669	EXOSC1	99	83.505	Aotus_nancymaae
ENSSPUG00000012263	EXOSC1	98	74.346	ENSACLG00000021243	exosc1	98	74.346	Astatotilapia_calliptera
ENSSPUG00000012263	EXOSC1	98	77.487	ENSAMXG00000011116	exosc1	98	77.487	Astyanax_mexicanus
ENSSPUG00000012263	EXOSC1	99	83.505	ENSBTAG00000012699	EXOSC1	99	83.505	Bos_taurus
ENSSPUG00000012263	EXOSC1	93	37.696	WBGene00012966	exos-1	91	37.696	Caenorhabditis_elegans
ENSSPUG00000012263	EXOSC1	99	84.021	ENSCJAG00000016586	EXOSC1	99	84.021	Callithrix_jacchus
ENSSPUG00000012263	EXOSC1	99	82.474	ENSCAFG00000009068	EXOSC1	94	82.474	Canis_familiaris
ENSSPUG00000012263	EXOSC1	99	82.474	ENSCAFG00020006002	EXOSC1	94	82.474	Canis_lupus_dingo
ENSSPUG00000012263	EXOSC1	99	83.505	ENSCHIG00000015253	EXOSC1	99	83.505	Capra_hircus
ENSSPUG00000012263	EXOSC1	99	81.959	ENSTSYG00000000760	EXOSC1	99	81.959	Carlito_syrichta
ENSSPUG00000012263	EXOSC1	99	82.990	ENSCPOG00000001173	EXOSC1	99	82.990	Cavia_porcellus
ENSSPUG00000012263	EXOSC1	99	46.939	ENSCCAG00000023986	EXOSC1	99	46.939	Cebus_capucinus
ENSSPUG00000012263	EXOSC1	99	84.536	ENSCATG00000034114	EXOSC1	99	84.536	Cercocebus_atys
ENSSPUG00000012263	EXOSC1	99	83.505	ENSCLAG00000002463	EXOSC1	99	83.505	Chinchilla_lanigera
ENSSPUG00000012263	EXOSC1	99	84.021	ENSCSAG00000005870	EXOSC1	99	84.021	Chlorocebus_sabaeus
ENSSPUG00000012263	EXOSC1	96	71.658	ENSCHOG00000006477	EXOSC1	100	71.658	Choloepus_hoffmanni
ENSSPUG00000012263	EXOSC1	54	81.132	ENSCPBG00000011949	EXOSC1	88	81.132	Chrysemys_picta_bellii
ENSSPUG00000012263	EXOSC1	96	52.660	ENSCING00000022734	-	90	52.660	Ciona_intestinalis
ENSSPUG00000012263	EXOSC1	96	56.383	ENSCSAVG00000010865	-	96	56.383	Ciona_savignyi
ENSSPUG00000012263	EXOSC1	99	84.536	ENSCANG00000034159	EXOSC1	99	84.536	Colobus_angolensis_palliatus
ENSSPUG00000012263	EXOSC1	99	84.021	ENSCGRG00001000335	Exosc1	99	84.021	Cricetulus_griseus_chok1gshd
ENSSPUG00000012263	EXOSC1	99	84.021	ENSCGRG00000011602	Exosc1	99	84.021	Cricetulus_griseus_crigri
ENSSPUG00000012263	EXOSC1	98	63.874	ENSCSEG00000007895	exosc1	95	63.874	Cynoglossus_semilaevis
ENSSPUG00000012263	EXOSC1	98	70.681	ENSCVAG00000016748	exosc1	98	70.681	Cyprinodon_variegatus
ENSSPUG00000012263	EXOSC1	98	77.487	ENSDARG00000059841	exosc1	98	77.487	Danio_rerio
ENSSPUG00000012263	EXOSC1	75	81.757	ENSDNOG00000007983	EXOSC1	100	81.757	Dasypus_novemcinctus
ENSSPUG00000012263	EXOSC1	99	82.990	ENSDORG00000016528	Exosc1	99	82.990	Dipodomys_ordii
ENSSPUG00000012263	EXOSC1	94	45.789	FBgn0032346	Csl4	92	45.789	Drosophila_melanogaster
ENSSPUG00000012263	EXOSC1	99	82.474	ENSETEG00000002469	-	99	82.474	Echinops_telfairi
ENSSPUG00000012263	EXOSC1	97	62.694	ENSEBUG00000008164	exosc1	96	62.694	Eptatretus_burgeri
ENSSPUG00000012263	EXOSC1	99	76.804	ENSEASG00005008684	EXOSC1	99	76.804	Equus_asinus_asinus
ENSSPUG00000012263	EXOSC1	61	66.387	ENSECAG00000010621	EXOSC1	71	66.387	Equus_caballus
ENSSPUG00000012263	EXOSC1	99	82.990	ENSEEUG00000005647	EXOSC1	99	82.990	Erinaceus_europaeus
ENSSPUG00000012263	EXOSC1	94	75.543	ENSELUG00000017369	exosc1	97	60.417	Esox_lucius
ENSSPUG00000012263	EXOSC1	99	82.990	ENSFCAG00000040563	EXOSC1	94	82.990	Felis_catus
ENSSPUG00000012263	EXOSC1	99	81.959	ENSFALG00000008450	EXOSC1	99	81.959	Ficedula_albicollis
ENSSPUG00000012263	EXOSC1	99	84.021	ENSFDAG00000000846	EXOSC1	99	84.021	Fukomys_damarensis
ENSSPUG00000012263	EXOSC1	98	70.681	ENSFHEG00000009154	exosc1	98	70.681	Fundulus_heteroclitus
ENSSPUG00000012263	EXOSC1	98	74.869	ENSGMOG00000008993	exosc1	98	74.869	Gadus_morhua
ENSSPUG00000012263	EXOSC1	99	72.165	ENSGALG00000039917	EXOSC1	99	87.500	Gallus_gallus
ENSSPUG00000012263	EXOSC1	98	70.681	ENSGAFG00000010265	exosc1	94	70.681	Gambusia_affinis
ENSSPUG00000012263	EXOSC1	98	74.869	ENSGACG00000018936	exosc1	98	74.869	Gasterosteus_aculeatus
ENSSPUG00000012263	EXOSC1	99	86.598	ENSGAGG00000019192	EXOSC1	99	86.598	Gopherus_agassizii
ENSSPUG00000012263	EXOSC1	99	74.227	ENSGGOG00000003099	EXOSC1	99	74.227	Gorilla_gorilla
ENSSPUG00000012263	EXOSC1	98	74.346	ENSHBUG00000017857	exosc1	98	74.346	Haplochromis_burtoni
ENSSPUG00000012263	EXOSC1	99	83.505	ENSHGLG00000016927	EXOSC1	99	83.505	Heterocephalus_glaber_female
ENSSPUG00000012263	EXOSC1	99	83.505	ENSHGLG00100012208	EXOSC1	99	83.505	Heterocephalus_glaber_male
ENSSPUG00000012263	EXOSC1	98	74.346	ENSHCOG00000019882	exosc1	98	74.346	Hippocampus_comes
ENSSPUG00000012263	EXOSC1	98	76.963	ENSIPUG00000007685	exosc1	98	76.963	Ictalurus_punctatus
ENSSPUG00000012263	EXOSC1	99	82.990	ENSSTOG00000006615	EXOSC1	99	82.990	Ictidomys_tridecemlineatus
ENSSPUG00000012263	EXOSC1	63	66.393	ENSSTOG00000029860	-	93	66.393	Ictidomys_tridecemlineatus
ENSSPUG00000012263	EXOSC1	99	82.990	ENSJJAG00000013311	Exosc1	99	82.990	Jaculus_jaculus
ENSSPUG00000012263	EXOSC1	98	72.775	ENSKMAG00000001202	exosc1	81	72.775	Kryptolebias_marmoratus
ENSSPUG00000012263	EXOSC1	98	75.393	ENSLBEG00000011448	exosc1	98	75.393	Labrus_bergylta
ENSSPUG00000012263	EXOSC1	98	57.360	ENSLOCG00000003776	exosc1	98	57.360	Lepisosteus_oculatus
ENSSPUG00000012263	EXOSC1	99	83.505	ENSLAFG00000015983	EXOSC1	99	83.505	Loxodonta_africana
ENSSPUG00000012263	EXOSC1	99	84.536	ENSMFAG00000001493	EXOSC1	99	84.536	Macaca_fascicularis
ENSSPUG00000012263	EXOSC1	99	84.536	ENSMMUG00000020028	EXOSC1	99	78.283	Macaca_mulatta
ENSSPUG00000012263	EXOSC1	99	84.536	ENSMNEG00000029816	EXOSC1	99	84.536	Macaca_nemestrina
ENSSPUG00000012263	EXOSC1	99	79.381	ENSMLEG00000027643	EXOSC1	99	79.381	Mandrillus_leucophaeus
ENSSPUG00000012263	EXOSC1	98	74.869	ENSMAMG00000012200	exosc1	98	74.869	Mastacembelus_armatus
ENSSPUG00000012263	EXOSC1	98	74.346	ENSMZEG00005007042	exosc1	98	74.346	Maylandia_zebra
ENSSPUG00000012263	EXOSC1	99	74.227	ENSMAUG00000020462	-	99	74.227	Mesocricetus_auratus
ENSSPUG00000012263	EXOSC1	99	82.990	ENSMICG00000007664	EXOSC1	92	82.990	Microcebus_murinus
ENSSPUG00000012263	EXOSC1	99	84.021	ENSMOCG00000006004	-	99	84.021	Microtus_ochrogaster
ENSSPUG00000012263	EXOSC1	96	78.836	ENSMOCG00000017124	-	96	78.836	Microtus_ochrogaster
ENSSPUG00000012263	EXOSC1	98	55.497	ENSMMOG00000021403	exosc1	98	55.497	Mola_mola
ENSSPUG00000012263	EXOSC1	99	83.077	ENSMODG00000004213	EXOSC1	99	83.077	Monodelphis_domestica
ENSSPUG00000012263	EXOSC1	94	75.543	ENSMALG00000007061	exosc1	92	75.543	Monopterus_albus
ENSSPUG00000012263	EXOSC1	99	84.021	MGP_CAROLIEiJ_G0022959	Exosc1	99	84.021	Mus_caroli
ENSSPUG00000012263	EXOSC1	99	84.021	ENSMUSG00000034321	Exosc1	99	84.021	Mus_musculus
ENSSPUG00000012263	EXOSC1	99	84.021	MGP_PahariEiJ_G0014449	Exosc1	99	84.021	Mus_pahari
ENSSPUG00000012263	EXOSC1	99	84.021	MGP_SPRETEiJ_G0023880	Exosc1	99	84.021	Mus_spretus
ENSSPUG00000012263	EXOSC1	99	82.990	ENSMPUG00000017044	EXOSC1	99	82.990	Mustela_putorius_furo
ENSSPUG00000012263	EXOSC1	99	82.474	ENSMLUG00000009228	EXOSC1	99	82.474	Myotis_lucifugus
ENSSPUG00000012263	EXOSC1	99	83.505	ENSNGAG00000022033	Exosc1	99	83.505	Nannospalax_galili
ENSSPUG00000012263	EXOSC1	98	57.068	ENSNBRG00000024007	exosc1	97	57.068	Neolamprologus_brichardi
ENSSPUG00000012263	EXOSC1	99	84.021	ENSNLEG00000013872	EXOSC1	99	84.021	Nomascus_leucogenys
ENSSPUG00000012263	EXOSC1	59	77.391	ENSMEUG00000002246	EXOSC1	100	77.391	Notamacropus_eugenii
ENSSPUG00000012263	EXOSC1	99	84.021	ENSOPRG00000005065	EXOSC1	99	84.021	Ochotona_princeps
ENSSPUG00000012263	EXOSC1	99	84.021	ENSODEG00000016709	EXOSC1	99	84.021	Octodon_degus
ENSSPUG00000012263	EXOSC1	98	74.346	ENSONIG00000017683	exosc1	98	74.346	Oreochromis_niloticus
ENSSPUG00000012263	EXOSC1	58	85.965	ENSOANG00000006563	EXOSC1	98	82.927	Ornithorhynchus_anatinus
ENSSPUG00000012263	EXOSC1	99	78.866	ENSOCUG00000026461	-	99	78.866	Oryctolagus_cuniculus
ENSSPUG00000012263	EXOSC1	99	83.590	ENSOCUG00000011898	-	99	83.590	Oryctolagus_cuniculus
ENSSPUG00000012263	EXOSC1	98	73.438	ENSORLG00000011595	exosc1	98	73.438	Oryzias_latipes
ENSSPUG00000012263	EXOSC1	98	73.438	ENSORLG00020005831	exosc1	98	73.438	Oryzias_latipes_hni
ENSSPUG00000012263	EXOSC1	98	73.438	ENSORLG00015004317	exosc1	98	73.438	Oryzias_latipes_hsok
ENSSPUG00000012263	EXOSC1	98	60.733	ENSOMEG00000013907	exosc1	98	60.733	Oryzias_melastigma
ENSSPUG00000012263	EXOSC1	99	82.990	ENSOGAG00000016259	EXOSC1	99	82.990	Otolemur_garnettii
ENSSPUG00000012263	EXOSC1	99	82.990	ENSOARG00000010136	EXOSC1	99	82.990	Ovis_aries
ENSSPUG00000012263	EXOSC1	99	79.188	ENSPPAG00000039842	EXOSC1	99	79.188	Pan_paniscus
ENSSPUG00000012263	EXOSC1	99	82.990	ENSPPRG00000023366	EXOSC1	99	82.990	Panthera_pardus
ENSSPUG00000012263	EXOSC1	99	82.990	ENSPTIG00000017701	EXOSC1	99	82.990	Panthera_tigris_altaica
ENSSPUG00000012263	EXOSC1	99	84.536	ENSPTRG00000002808	EXOSC1	99	84.536	Pan_troglodytes
ENSSPUG00000012263	EXOSC1	99	84.536	ENSPANG00000021324	EXOSC1	99	84.536	Papio_anubis
ENSSPUG00000012263	EXOSC1	98	75.393	ENSPKIG00000016037	exosc1	98	75.393	Paramormyrops_kingsleyae
ENSSPUG00000012263	EXOSC1	74	83.333	ENSPSIG00000013571	EXOSC1	98	81.818	Pelodiscus_sinensis
ENSSPUG00000012263	EXOSC1	98	63.351	ENSPMGG00000014002	exosc1	98	63.351	Periophthalmus_magnuspinnatus
ENSSPUG00000012263	EXOSC1	99	84.021	ENSPEMG00000010710	-	99	84.021	Peromyscus_maniculatus_bairdii
ENSSPUG00000012263	EXOSC1	95	67.204	ENSPMAG00000000195	exosc1	95	67.204	Petromyzon_marinus
ENSSPUG00000012263	EXOSC1	99	82.474	ENSPCIG00000002210	EXOSC1	98	82.474	Phascolarctos_cinereus
ENSSPUG00000012263	EXOSC1	98	70.157	ENSPFOG00000006755	exosc1	94	70.157	Poecilia_formosa
ENSSPUG00000012263	EXOSC1	98	70.157	ENSPLAG00000005880	exosc1	98	70.157	Poecilia_latipinna
ENSSPUG00000012263	EXOSC1	98	70.157	ENSPMEG00000015598	exosc1	94	70.157	Poecilia_mexicana
ENSSPUG00000012263	EXOSC1	98	60.733	ENSPREG00000000405	exosc1	93	60.733	Poecilia_reticulata
ENSSPUG00000012263	EXOSC1	99	84.021	ENSPPYG00000002531	EXOSC1	99	84.021	Pongo_abelii
ENSSPUG00000012263	EXOSC1	99	81.959	ENSPCAG00000009135	EXOSC1	99	81.959	Procavia_capensis
ENSSPUG00000012263	EXOSC1	99	77.320	ENSPCOG00000027539	EXOSC1	99	77.320	Propithecus_coquereli
ENSSPUG00000012263	EXOSC1	99	82.990	ENSPVAG00000003372	EXOSC1	99	82.990	Pteropus_vampyrus
ENSSPUG00000012263	EXOSC1	98	74.346	ENSPNYG00000021745	exosc1	98	74.346	Pundamilia_nyererei
ENSSPUG00000012263	EXOSC1	98	76.440	ENSPNAG00000001944	exosc1	98	76.440	Pygocentrus_nattereri
ENSSPUG00000012263	EXOSC1	99	84.021	ENSRNOG00000048708	Exosc1	99	84.021	Rattus_norvegicus
ENSSPUG00000012263	EXOSC1	99	84.536	ENSRBIG00000035618	EXOSC1	99	84.536	Rhinopithecus_bieti
ENSSPUG00000012263	EXOSC1	99	84.536	ENSRROG00000032589	EXOSC1	92	84.536	Rhinopithecus_roxellana
ENSSPUG00000012263	EXOSC1	99	83.505	ENSSBOG00000000359	EXOSC1	99	83.505	Saimiri_boliviensis_boliviensis
ENSSPUG00000012263	EXOSC1	74	85.517	ENSSHAG00000018219	EXOSC1	99	85.517	Sarcophilus_harrisii
ENSSPUG00000012263	EXOSC1	98	76.963	ENSSFOG00015009069	exosc1	98	76.963	Scleropages_formosus
ENSSPUG00000012263	EXOSC1	97	73.158	ENSSFOG00015016289	-	98	73.158	Scleropages_formosus
ENSSPUG00000012263	EXOSC1	98	75.916	ENSSMAG00000003721	exosc1	98	75.916	Scophthalmus_maximus
ENSSPUG00000012263	EXOSC1	98	75.393	ENSSDUG00000002993	exosc1	98	75.393	Seriola_dumerili
ENSSPUG00000012263	EXOSC1	98	75.393	ENSSLDG00000025181	exosc1	98	75.393	Seriola_lalandi_dorsalis
ENSSPUG00000012263	EXOSC1	99	72.680	ENSSARG00000000162	EXOSC1	99	72.680	Sorex_araneus
ENSSPUG00000012263	EXOSC1	98	67.016	ENSSPAG00000016792	exosc1	82	67.016	Stegastes_partitus
ENSSPUG00000012263	EXOSC1	99	81.959	ENSSSCG00000010518	EXOSC1	91	81.959	Sus_scrofa
ENSSPUG00000012263	EXOSC1	98	80.729	ENSTGUG00000009692	EXOSC1	99	80.729	Taeniopygia_guttata
ENSSPUG00000012263	EXOSC1	97	69.841	ENSTRUG00000007706	exosc1	98	69.841	Takifugu_rubripes
ENSSPUG00000012263	EXOSC1	97	68.229	ENSTNIG00000014079	exosc1	97	68.229	Tetraodon_nigroviridis
ENSSPUG00000012263	EXOSC1	99	78.866	ENSTBEG00000006011	EXOSC1	99	78.866	Tupaia_belangeri
ENSSPUG00000012263	EXOSC1	94	83.607	ENSTTRG00000009887	EXOSC1	99	83.607	Tursiops_truncatus
ENSSPUG00000012263	EXOSC1	99	69.388	ENSUAMG00000010266	EXOSC1	99	69.388	Ursus_americanus
ENSSPUG00000012263	EXOSC1	99	69.388	ENSUMAG00000022002	EXOSC1	99	69.388	Ursus_maritimus
ENSSPUG00000012263	EXOSC1	99	82.474	ENSVVUG00000023192	EXOSC1	63	82.474	Vulpes_vulpes
ENSSPUG00000012263	EXOSC1	98	77.487	ENSXETG00000003434	exosc1	98	77.487	Xenopus_tropicalis
ENSSPUG00000012263	EXOSC1	62	78.333	ENSXCOG00000014499	exosc1	92	78.333	Xiphophorus_couchianus
ENSSPUG00000012263	EXOSC1	98	61.257	ENSXMAG00000023382	exosc1	93	61.257	Xiphophorus_maculatus