EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSPUG00000012950 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: RAB5CL|RABL
Full Name: -
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 8298 bases
Position: chrQEPC01015670.1:163609-171906
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000016747	MMR_HSR1	PF01926.23	0.00011	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000017836	-	755	-	ENSSPUP00000016747	216 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000012950's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000012950's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSPUG00000012950	-	89	39.409	ENSSPUG00000018803	RAB14	89	39.409
ENSSPUG00000012950	-	90	47.423	ENSSPUG00000000017	RAB22A	98	47.423
ENSSPUG00000012950	-	89	40.594	ENSSPUG00000013698	RAB11A	99	40.594
ENSSPUG00000012950	-	80	30.058	ENSSPUG00000003341	-	92	30.058
ENSSPUG00000012950	-	89	43.367	ENSSPUG00000007945	RAB1B	96	43.367
ENSSPUG00000012950	-	83	38.830	ENSSPUG00000005574	RAB33A	82	38.830
ENSSPUG00000012950	-	85	35.870	ENSSPUG00000003222	RAB12	83	34.483
ENSSPUG00000012950	-	90	41.667	ENSSPUG00000002526	-	94	41.667
ENSSPUG00000012950	-	81	44.000	ENSSPUG00000017301	RAB6A	84	44.000
ENSSPUG00000012950	-	77	33.533	ENSSPUG00000018789	-	90	32.749
ENSSPUG00000012950	-	73	34.810	ENSSPUG00000006274	RAB23	71	35.882
ENSSPUG00000012950	-	79	38.824	ENSSPUG00000010896	-	95	36.410
ENSSPUG00000012950	-	85	35.135	ENSSPUG00000010337	RAB42	82	35.135
ENSSPUG00000012950	-	80	42.775	ENSSPUG00000001533	-	82	42.775
ENSSPUG00000012950	-	82	32.973	ENSSPUG00000014551	RAB36	80	32.973
ENSSPUG00000012950	-	89	33.333	ENSSPUG00000003459	-	97	33.333
ENSSPUG00000012950	-	89	34.343	ENSSPUG00000013564	-	97	34.343
ENSSPUG00000012950	-	67	34.483	ENSSPUG00000018361	RHEB	84	34.483
ENSSPUG00000012950	-	89	37.436	ENSSPUG00000016258	RAB35	96	36.598
ENSSPUG00000012950	-	89	43.814	ENSSPUG00000012822	RAB1A	95	43.814
ENSSPUG00000012950	-	85	32.973	ENSSPUG00000007384	RAP2B	97	33.838
ENSSPUG00000012950	-	59	31.061	ENSSPUG00000007980	ARL8A	66	31.061
ENSSPUG00000012950	-	57	55.200	ENSSPUG00000015409	RAB17	57	55.200
ENSSPUG00000012950	-	91	48.223	ENSSPUG00000003439	RAB31	98	48.223
ENSSPUG00000012950	-	85	42.703	ENSSPUG00000017677	-	87	43.407
ENSSPUG00000012950	-	75	36.585	ENSSPUG00000000552	RAB39B	77	36.585
ENSSPUG00000012950	-	78	42.012	ENSSPUG00000006349	RAB30	83	42.012
ENSSPUG00000012950	-	90	43.204	ENSSPUG00000002243	-	94	43.204
ENSSPUG00000012950	-	82	31.694	ENSSPUG00000005243	HRAS	96	31.694
ENSSPUG00000012950	-	89	34.343	ENSSPUG00000017531	RAB9B	97	34.343
ENSSPUG00000012950	-	88	92.670	ENSSPUG00000001173	RAB5A	98	92.670
ENSSPUG00000012950	-	79	36.257	ENSSPUG00000000617	RAB15	81	36.257
ENSSPUG00000012950	-	77	41.436	ENSSPUG00000004262	RAB7A	87	41.436
ENSSPUG00000012950	-	90	37.624	ENSSPUG00000002555	RAB25	99	37.624
ENSSPUG00000012950	-	89	33.500	ENSSPUG00000015007	RAB29	97	33.500
ENSSPUG00000012950	-	81	39.444	ENSSPUG00000008120	RAB33B	81	39.267
ENSSPUG00000012950	-	98	88.152	ENSSPUG00000014873	RAB5B	98	88.152
ENSSPUG00000012950	-	83	31.111	ENSSPUG00000008958	NRAS	94	31.111
ENSSPUG00000012950	-	75	44.099	ENSSPUG00000010112	RAB2B	74	44.099

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000012950	-	100	95.833	ENSG00000108774	RAB5C	100	100.000	Homo_sapiens
ENSSPUG00000012950	-	99	88.837	ENSAPOG00000016864	rab5c	98	91.628	Acanthochromis_polyacanthus
ENSSPUG00000012950	-	100	95.833	ENSAMEG00000006003	RAB5C	100	95.833	Ailuropoda_melanoleuca
ENSSPUG00000012950	-	99	88.889	ENSACIG00000010896	rab5c	98	90.741	Amphilophus_citrinellus
ENSSPUG00000012950	-	99	88.889	ENSAOCG00000016614	rab5c	98	91.667	Amphiprion_ocellaris
ENSSPUG00000012950	-	97	88.626	ENSAPEG00000017868	-	97	91.469	Amphiprion_percula
ENSSPUG00000012950	-	100	89.908	ENSATEG00000001937	rab5c	100	90.826	Anabas_testudineus
ENSSPUG00000012950	-	94	98.039	ENSANAG00000025390	RAB5C	100	98.039	Aotus_nancymaae
ENSSPUG00000012950	-	99	87.963	ENSACLG00000002706	rab5c	98	90.278	Astatotilapia_calliptera
ENSSPUG00000012950	-	96	88.152	ENSACLG00000008615	-	99	87.671	Astatotilapia_calliptera
ENSSPUG00000012950	-	96	88.095	ENSAMXG00000037267	-	99	90.000	Astyanax_mexicanus
ENSSPUG00000012950	-	99	89.862	ENSAMXG00000043717	rab5c	98	91.705	Astyanax_mexicanus
ENSSPUG00000012950	-	100	95.833	ENSBTAG00000006982	RAB5C	100	95.833	Bos_taurus
ENSSPUG00000012950	-	99	75.463	WBGene00004268	rab-5	99	75.463	Caenorhabditis_elegans
ENSSPUG00000012950	-	100	96.296	ENSCAFG00000015629	RAB5C	100	96.296	Canis_familiaris
ENSSPUG00000012950	-	100	96.296	ENSCAFG00020013537	RAB5C	100	96.296	Canis_lupus_dingo
ENSSPUG00000012950	-	100	95.833	ENSCHIG00000012960	RAB5C	100	95.833	Capra_hircus
ENSSPUG00000012950	-	100	96.296	ENSTSYG00000030531	RAB5C	100	96.296	Carlito_syrichta
ENSSPUG00000012950	-	100	95.833	ENSCCAG00000025940	RAB5C	100	95.833	Cebus_capucinus
ENSSPUG00000012950	-	100	95.833	ENSCATG00000040873	RAB5C	100	95.833	Cercocebus_atys
ENSSPUG00000012950	-	100	95.370	ENSCLAG00000016650	RAB5C	100	95.370	Chinchilla_lanigera
ENSSPUG00000012950	-	82	98.876	ENSCHOG00000009886	RAB5C	100	98.876	Choloepus_hoffmanni
ENSSPUG00000012950	-	99	75.234	ENSCING00000003340	-	99	75.234	Ciona_intestinalis
ENSSPUG00000012950	-	99	75.111	ENSCSAVG00000000613	-	99	82.716	Ciona_savignyi
ENSSPUG00000012950	-	100	95.370	ENSCGRG00001014226	Rab5c	100	95.370	Cricetulus_griseus_chok1gshd
ENSSPUG00000012950	-	100	95.370	ENSCGRG00000007534	Rab5c	100	95.370	Cricetulus_griseus_crigri
ENSSPUG00000012950	-	99	89.815	ENSCSEG00000017024	rab5c	98	89.815	Cynoglossus_semilaevis
ENSSPUG00000012950	-	99	88.889	ENSCVAG00000009550	rab5c	98	90.741	Cyprinodon_variegatus
ENSSPUG00000012950	-	100	95.370	ENSDNOG00000038853	RAB5C	100	95.370	Dasypus_novemcinctus
ENSSPUG00000012950	-	100	95.370	ENSDORG00000006819	Rab5c	100	95.370	Dipodomys_ordii
ENSSPUG00000012950	-	99	75.117	FBgn0014010	Rab5	95	75.117	Drosophila_melanogaster
ENSSPUG00000012950	-	99	78.899	ENSEBUG00000014794	rab5c	100	78.899	Eptatretus_burgeri
ENSSPUG00000012950	-	100	95.833	ENSEASG00005009281	RAB5C	100	95.833	Equus_asinus_asinus
ENSSPUG00000012950	-	100	96.296	ENSECAG00000025054	RAB5C	100	96.296	Equus_caballus
ENSSPUG00000012950	-	100	95.833	ENSEEUG00000002790	RAB5C	100	95.833	Erinaceus_europaeus
ENSSPUG00000012950	-	99	88.426	ENSELUG00000010439	-	98	88.426	Esox_lucius
ENSSPUG00000012950	-	99	87.963	ENSELUG00000018516	rab5c	99	89.815	Esox_lucius
ENSSPUG00000012950	-	100	95.833	ENSFCAG00000002148	RAB5C	100	95.833	Felis_catus
ENSSPUG00000012950	-	100	94.444	ENSFDAG00000021541	RAB5C	100	94.444	Fukomys_damarensis
ENSSPUG00000012950	-	99	89.815	ENSFHEG00000012117	rab5c	98	91.667	Fundulus_heteroclitus
ENSSPUG00000012950	-	99	90.783	ENSFHEG00000015268	-	99	90.783	Fundulus_heteroclitus
ENSSPUG00000012950	-	99	87.963	ENSGMOG00000015096	rab5c	98	90.278	Gadus_morhua
ENSSPUG00000012950	-	80	86.628	ENSGMOG00000001876	-	99	86.628	Gadus_morhua
ENSSPUG00000012950	-	99	90.278	ENSGAFG00000000884	rab5c	98	92.130	Gambusia_affinis
ENSSPUG00000012950	-	95	90.865	ENSGAFG00000003642	-	99	87.273	Gambusia_affinis
ENSSPUG00000012950	-	87	95.213	ENSGACG00000008659	rab5c	98	87.500	Gasterosteus_aculeatus
ENSSPUG00000012950	-	100	95.833	ENSGGOG00000005472	RAB5C	100	95.833	Gorilla_gorilla
ENSSPUG00000012950	-	96	88.152	ENSHBUG00000006823	-	99	87.671	Haplochromis_burtoni
ENSSPUG00000012950	-	99	87.963	ENSHBUG00000002014	rab5c	98	90.278	Haplochromis_burtoni
ENSSPUG00000012950	-	100	93.519	ENSHGLG00000012067	RAB5C	100	93.519	Heterocephalus_glaber_female
ENSSPUG00000012950	-	99	89.862	ENSHCOG00000004662	rab5c	97	91.244	Hippocampus_comes
ENSSPUG00000012950	-	97	82.075	ENSHCOG00000020238	-	100	80.909	Hippocampus_comes
ENSSPUG00000012950	-	96	87.619	ENSIPUG00000020082	rab5c	98	88.532	Ictalurus_punctatus
ENSSPUG00000012950	-	100	94.907	ENSSTOG00000006620	RAB5C	100	94.907	Ictidomys_tridecemlineatus
ENSSPUG00000012950	-	100	95.833	ENSJJAG00000021181	Rab5c	100	95.833	Jaculus_jaculus
ENSSPUG00000012950	-	99	88.889	ENSKMAG00000020038	rab5c	98	90.741	Kryptolebias_marmoratus
ENSSPUG00000012950	-	99	88.018	ENSKMAG00000017417	-	99	88.018	Kryptolebias_marmoratus
ENSSPUG00000012950	-	99	89.815	ENSLBEG00000004128	rab5c	98	92.130	Labrus_bergylta
ENSSPUG00000012950	-	100	88.073	ENSLBEG00000010408	-	99	88.073	Labrus_bergylta
ENSSPUG00000012950	-	99	95.327	ENSLOCG00000012566	rab5c	100	95.327	Lepisosteus_oculatus
ENSSPUG00000012950	-	100	95.833	ENSMFAG00000039627	RAB5C	100	95.833	Macaca_fascicularis
ENSSPUG00000012950	-	100	95.833	ENSMNEG00000000355	RAB5C	100	95.833	Macaca_nemestrina
ENSSPUG00000012950	-	99	88.479	ENSMAMG00000016207	-	99	88.479	Mastacembelus_armatus
ENSSPUG00000012950	-	99	88.426	ENSMAMG00000022322	rab5c	98	90.278	Mastacembelus_armatus
ENSSPUG00000012950	-	99	87.963	ENSMZEG00005022735	rab5c	98	90.278	Maylandia_zebra
ENSSPUG00000012950	-	96	88.152	ENSMZEG00005021090	-	99	87.671	Maylandia_zebra
ENSSPUG00000012950	-	100	96.296	ENSMAUG00000015005	Rab5c	100	96.296	Mesocricetus_auratus
ENSSPUG00000012950	-	100	95.833	ENSMICG00000041608	RAB5C	100	95.833	Microcebus_murinus
ENSSPUG00000012950	-	100	96.296	ENSMOCG00000018531	-	100	96.296	Microtus_ochrogaster
ENSSPUG00000012950	-	100	90.367	ENSMMOG00000020621	rab5c	99	90.367	Mola_mola
ENSSPUG00000012950	-	99	87.156	ENSMALG00000022348	-	99	87.156	Monopterus_albus
ENSSPUG00000012950	-	97	83.886	ENSMALG00000006052	rab5c	96	83.721	Monopterus_albus
ENSSPUG00000012950	-	100	95.833	MGP_CAROLIEiJ_G0017184	Rab5c	100	95.833	Mus_caroli
ENSSPUG00000012950	-	100	95.833	ENSMUSG00000019173	Rab5c	100	95.833	Mus_musculus
ENSSPUG00000012950	-	100	95.833	MGP_PahariEiJ_G0018314	Rab5c	100	95.833	Mus_pahari
ENSSPUG00000012950	-	100	95.833	MGP_SPRETEiJ_G0018027	Rab5c	100	95.833	Mus_spretus
ENSSPUG00000012950	-	100	95.833	ENSMPUG00000010554	RAB5C	100	95.833	Mustela_putorius_furo
ENSSPUG00000012950	-	100	95.833	ENSNGAG00000010286	Rab5c	100	95.833	Nannospalax_galili
ENSSPUG00000012950	-	99	88.889	ENSNBRG00000018165	rab5c	98	91.204	Neolamprologus_brichardi
ENSSPUG00000012950	-	96	88.152	ENSNBRG00000016922	-	99	87.671	Neolamprologus_brichardi
ENSSPUG00000012950	-	82	92.135	ENSOPRG00000008255	RAB5C	100	92.135	Ochotona_princeps
ENSSPUG00000012950	-	100	94.444	ENSODEG00000017920	RAB5C	100	94.444	Octodon_degus
ENSSPUG00000012950	-	99	88.889	ENSONIG00000001113	rab5c	98	91.204	Oreochromis_niloticus
ENSSPUG00000012950	-	100	88.532	ENSORLG00000003882	rab5c	100	89.450	Oryzias_latipes
ENSSPUG00000012950	-	100	89.908	ENSORLG00020008388	rab5c	100	89.908	Oryzias_latipes_hni
ENSSPUG00000012950	-	100	88.532	ENSORLG00015021900	rab5c	100	89.450	Oryzias_latipes_hsok
ENSSPUG00000012950	-	100	88.532	ENSOMEG00000023078	rab5c	100	89.450	Oryzias_melastigma
ENSSPUG00000012950	-	100	95.833	ENSOGAG00000009456	RAB5C	100	95.833	Otolemur_garnettii
ENSSPUG00000012950	-	100	95.833	ENSOARG00000018768	RAB5C	100	95.833	Ovis_aries
ENSSPUG00000012950	-	100	95.833	ENSPPAG00000037206	RAB5C	100	95.833	Pan_paniscus
ENSSPUG00000012950	-	100	95.833	ENSPPRG00000005745	RAB5C	100	95.833	Panthera_pardus
ENSSPUG00000012950	-	100	95.833	ENSPTIG00000008177	RAB5C	100	95.833	Panthera_tigris_altaica
ENSSPUG00000012950	-	100	95.833	ENSPTRG00000009194	RAB5C	100	95.833	Pan_troglodytes
ENSSPUG00000012950	-	99	87.500	ENSPKIG00000020112	-	99	87.500	Paramormyrops_kingsleyae
ENSSPUG00000012950	-	99	89.302	ENSPKIG00000001237	-	99	89.302	Paramormyrops_kingsleyae
ENSSPUG00000012950	-	99	86.111	ENSPMGG00000010792	rab5c	97	89.573	Periophthalmus_magnuspinnatus
ENSSPUG00000012950	-	100	96.296	ENSPEMG00000017971	Rab5c	100	96.296	Peromyscus_maniculatus_bairdii
ENSSPUG00000012950	-	99	79.439	ENSPMAG00000007867	rab5c	99	79.439	Petromyzon_marinus
ENSSPUG00000012950	-	99	77.679	ENSPMAG00000000008	rab5c	100	77.679	Petromyzon_marinus
ENSSPUG00000012950	-	99	80.465	ENSPMAG00000001399	rab5c	100	80.465	Petromyzon_marinus
ENSSPUG00000012950	-	100	96.296	ENSPCIG00000020225	-	100	96.296	Phascolarctos_cinereus
ENSSPUG00000012950	-	99	90.278	ENSPLAG00000004790	rab5c	98	92.130	Poecilia_latipinna
ENSSPUG00000012950	-	99	88.940	ENSPLAG00000016333	-	99	88.940	Poecilia_latipinna
ENSSPUG00000012950	-	99	90.278	ENSPMEG00000011336	rab5c	98	92.130	Poecilia_mexicana
ENSSPUG00000012950	-	98	87.324	ENSPMEG00000012614	-	98	87.671	Poecilia_mexicana
ENSSPUG00000012950	-	87	92.063	ENSPREG00000022167	-	89	93.443	Poecilia_reticulata
ENSSPUG00000012950	-	99	90.278	ENSPREG00000010146	rab5c	98	92.130	Poecilia_reticulata
ENSSPUG00000012950	-	100	95.833	ENSPPYG00000008398	RAB5C	100	95.833	Pongo_abelii
ENSSPUG00000012950	-	100	94.907	ENSPCAG00000016412	RAB5C	100	94.907	Procavia_capensis
ENSSPUG00000012950	-	100	95.370	ENSPCOG00000026327	RAB5C	100	95.370	Propithecus_coquereli
ENSSPUG00000012950	-	100	96.296	ENSPVAG00000003867	RAB5C	100	96.296	Pteropus_vampyrus
ENSSPUG00000012950	-	99	87.963	ENSPNYG00000010615	rab5c	98	90.278	Pundamilia_nyererei
ENSSPUG00000012950	-	96	88.152	ENSPNYG00000015851	-	99	87.671	Pundamilia_nyererei
ENSSPUG00000012950	-	99	91.244	ENSPNAG00000028138	rab5c	98	91.244	Pygocentrus_nattereri
ENSSPUG00000012950	-	97	86.792	ENSPNAG00000002218	-	99	88.679	Pygocentrus_nattereri
ENSSPUG00000012950	-	100	96.296	ENSRNOG00000018568	Rab5c	100	96.296	Rattus_norvegicus
ENSSPUG00000012950	-	100	95.833	ENSRBIG00000031376	RAB5C	100	95.833	Rhinopithecus_bieti
ENSSPUG00000012950	-	100	95.833	ENSRROG00000032895	RAB5C	100	95.833	Rhinopithecus_roxellana
ENSSPUG00000012950	-	100	95.833	ENSSBOG00000032552	-	100	95.833	Saimiri_boliviensis_boliviensis
ENSSPUG00000012950	-	100	96.759	ENSSHAG00000005267	-	100	96.759	Sarcophilus_harrisii
ENSSPUG00000012950	-	99	87.558	ENSSFOG00015009988	-	99	87.558	Scleropages_formosus
ENSSPUG00000012950	-	94	93.659	ENSSMAG00000007323	rab5c	98	90.278	Scophthalmus_maximus
ENSSPUG00000012950	-	99	93.056	ENSSDUG00000023008	rab5c	98	93.056	Seriola_dumerili
ENSSPUG00000012950	-	99	92.593	ENSSLDG00000017771	rab5c	98	92.593	Seriola_lalandi_dorsalis
ENSSPUG00000012950	-	99	89.815	ENSSPAG00000006436	rab5c	98	92.130	Stegastes_partitus
ENSSPUG00000012950	-	100	95.833	ENSSSCG00000032467	RAB5C	100	95.833	Sus_scrofa
ENSSPUG00000012950	-	99	87.963	ENSTRUG00000015590	rab5c	98	89.815	Takifugu_rubripes
ENSSPUG00000012950	-	96	90.431	ENSTNIG00000011711	rab5c	95	90.431	Tetraodon_nigroviridis
ENSSPUG00000012950	-	100	95.833	ENSTBEG00000007092	RAB5C	100	95.833	Tupaia_belangeri
ENSSPUG00000012950	-	100	94.907	ENSTTRG00000006673	RAB5C	100	94.907	Tursiops_truncatus
ENSSPUG00000012950	-	100	95.833	ENSUAMG00000024343	RAB5C	100	95.833	Ursus_americanus
ENSSPUG00000012950	-	100	95.833	ENSUMAG00000023270	RAB5C	100	95.833	Ursus_maritimus
ENSSPUG00000012950	-	95	91.346	ENSXCOG00000006300	-	99	87.330	Xiphophorus_couchianus
ENSSPUG00000012950	-	99	89.815	ENSXCOG00000016788	rab5c	98	92.130	Xiphophorus_couchianus
ENSSPUG00000012950	-	99	89.401	ENSXMAG00000022179	-	99	89.401	Xiphophorus_maculatus
ENSSPUG00000012950	-	99	90.278	ENSXMAG00000003266	rab5c	98	92.130	Xiphophorus_maculatus