EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000014396 (Gene tree)
Gene ID: -
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 21595 bases
Position: chrQEPC01007020.1:72839-94433
Accession: 2324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000018746	CPSF_A	PF03178.15	3.5e-92	1	1
ENSSPUP00000018759	CPSF_A	PF03178.15	3e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000019984	CPSF1-202	606	-	ENSSPUP00000018759	201 (aa)	-	-
ENSSPUT00000019971	CPSF1-201	4155	-	ENSSPUP00000018746	1384 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000014396's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000014396's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000014396	CPSF1	100	89.216	ENSG00000071894	CPSF1	100	89.216	Homo_sapiens
ENSSPUG00000014396	CPSF1	99	80.661	ENSAPOG00000019621	cpsf1	99	80.729	Acanthochromis_polyacanthus
ENSSPUG00000014396	CPSF1	99	86.821	ENSAMEG00000005557	CPSF1	99	86.821	Ailuropoda_melanoleuca
ENSSPUG00000014396	CPSF1	99	80.850	ENSACIG00000006112	cpsf1	96	81.425	Amphilophus_citrinellus
ENSSPUG00000014396	CPSF1	99	81.740	ENSAOCG00000007120	cpsf1	96	81.884	Amphiprion_ocellaris
ENSSPUG00000014396	CPSF1	99	82.902	ENSAPEG00000005755	cpsf1	96	82.974	Amphiprion_percula
ENSSPUG00000014396	CPSF1	99	80.959	ENSATEG00000011097	cpsf1	99	81.053	Anabas_testudineus
ENSSPUG00000014396	CPSF1	93	86.724	ENSACAG00000009655	CPSF1	96	86.724	Anolis_carolinensis
ENSSPUG00000014396	CPSF1	100	87.527	ENSANAG00000036514	CPSF1	96	87.527	Aotus_nancymaae
ENSSPUG00000014396	CPSF1	99	80.718	ENSACLG00000012231	cpsf1	99	80.788	Astatotilapia_calliptera
ENSSPUG00000014396	CPSF1	100	76.389	ENSAMXG00000008485	cpsf1	96	75.879	Astyanax_mexicanus
ENSSPUG00000014396	CPSF1	99	85.947	ENSBTAG00000008355	CPSF1	100	85.848	Bos_taurus
ENSSPUG00000014396	CPSF1	99	32.599	WBGene00022301	cpsf-1	99	41.408	Caenorhabditis_elegans
ENSSPUG00000014396	CPSF1	100	87.527	ENSCJAG00000021421	CPSF1	96	87.527	Callithrix_jacchus
ENSSPUG00000014396	CPSF1	99	88.223	ENSCAFG00000001600	CPSF1	100	87.939	Canis_familiaris
ENSSPUG00000014396	CPSF1	99	88.223	ENSCAFG00020020821	CPSF1	96	88.223	Canis_lupus_dingo
ENSSPUG00000014396	CPSF1	100	82.674	ENSCHIG00000015833	CPSF1	96	82.841	Capra_hircus
ENSSPUG00000014396	CPSF1	100	89.706	ENSTSYG00000028560	CPSF1	100	89.706	Carlito_syrichta
ENSSPUG00000014396	CPSF1	100	86.157	ENSCAPG00000014921	CPSF1	98	86.157	Cavia_aperea
ENSSPUG00000014396	CPSF1	100	85.591	ENSCPOG00000011448	CPSF1	96	85.591	Cavia_porcellus
ENSSPUG00000014396	CPSF1	100	88.293	ENSCCAG00000037658	CPSF1	100	88.293	Cebus_capucinus
ENSSPUG00000014396	CPSF1	100	88.780	ENSCATG00000037234	CPSF1	100	88.725	Cercocebus_atys
ENSSPUG00000014396	CPSF1	100	87.527	ENSCLAG00000012166	CPSF1	96	87.527	Chinchilla_lanigera
ENSSPUG00000014396	CPSF1	100	87.455	ENSCSAG00000008502	CPSF1	96	87.455	Chlorocebus_sabaeus
ENSSPUG00000014396	CPSF1	99	93.445	ENSCPBG00000018910	CPSF1	92	93.445	Chrysemys_picta_bellii
ENSSPUG00000014396	CPSF1	95	48.015	ENSCING00000000514	-	95	47.940	Ciona_intestinalis
ENSSPUG00000014396	CPSF1	99	48.716	ENSCSAVG00000002293	-	98	48.826	Ciona_savignyi
ENSSPUG00000014396	CPSF1	100	88.725	ENSCANG00000032760	CPSF1	100	88.725	Colobus_angolensis_palliatus
ENSSPUG00000014396	CPSF1	100	87.599	ENSCGRG00001016344	Cpsf1	96	87.599	Cricetulus_griseus_chok1gshd
ENSSPUG00000014396	CPSF1	100	85.436	ENSCGRG00000003118	Cpsf1	96	85.436	Cricetulus_griseus_crigri
ENSSPUG00000014396	CPSF1	99	80.620	ENSCSEG00000013464	cpsf1	99	79.927	Cynoglossus_semilaevis
ENSSPUG00000014396	CPSF1	100	78.049	ENSCVAG00000014059	cpsf1	100	78.049	Cyprinodon_variegatus
ENSSPUG00000014396	CPSF1	100	81.792	ENSDARG00000034178	cpsf1	96	81.935	Danio_rerio
ENSSPUG00000014396	CPSF1	55	89.275	ENSDNOG00000043654	CPSF1	87	89.275	Dasypus_novemcinctus
ENSSPUG00000014396	CPSF1	100	87.455	ENSDORG00000006278	Cpsf1	99	87.455	Dipodomys_ordii
ENSSPUG00000014396	CPSF1	99	45.105	FBgn0024698	Cpsf160	96	45.245	Drosophila_melanogaster
ENSSPUG00000014396	CPSF1	79	91.946	ENSETEG00000006022	CPSF1	78	91.946	Echinops_telfairi
ENSSPUG00000014396	CPSF1	90	61.224	ENSEBUG00000006844	-	97	74.803	Eptatretus_burgeri
ENSSPUG00000014396	CPSF1	99	88.150	ENSEASG00005010774	CPSF1	96	88.150	Equus_asinus_asinus
ENSSPUG00000014396	CPSF1	99	88.223	ENSECAG00000022209	CPSF1	96	88.223	Equus_caballus
ENSSPUG00000014396	CPSF1	99	87.355	ENSEEUG00000000471	CPSF1	96	87.229	Erinaceus_europaeus
ENSSPUG00000014396	CPSF1	99	80.342	ENSELUG00000012271	cpsf1	100	79.971	Esox_lucius
ENSSPUG00000014396	CPSF1	100	87.743	ENSFDAG00000016060	CPSF1	96	87.743	Fukomys_damarensis
ENSSPUG00000014396	CPSF1	100	80.458	ENSFHEG00000016801	cpsf1	96	80.530	Fundulus_heteroclitus
ENSSPUG00000014396	CPSF1	100	79.713	ENSGMOG00000000796	cpsf1	96	80.143	Gadus_morhua
ENSSPUG00000014396	CPSF1	96	85.714	ENSGAFG00000018890	cpsf1	96	85.714	Gambusia_affinis
ENSSPUG00000014396	CPSF1	99	81.120	ENSGACG00000008703	cpsf1	100	77.500	Gasterosteus_aculeatus
ENSSPUG00000014396	CPSF1	100	89.009	ENSGAGG00000004276	CPSF1	98	94.221	Gopherus_agassizii
ENSSPUG00000014396	CPSF1	100	59.223	ENSGGOG00000040487	-	100	66.667	Gorilla_gorilla
ENSSPUG00000014396	CPSF1	100	89.216	ENSGGOG00000016185	CPSF1	100	89.216	Gorilla_gorilla
ENSSPUG00000014396	CPSF1	99	82.289	ENSHBUG00000018900	cpsf1	96	82.721	Haplochromis_burtoni
ENSSPUG00000014396	CPSF1	100	87.527	ENSHGLG00000016139	CPSF1	96	87.527	Heterocephalus_glaber_female
ENSSPUG00000014396	CPSF1	100	87.455	ENSHGLG00100009750	CPSF1	96	87.455	Heterocephalus_glaber_male
ENSSPUG00000014396	CPSF1	99	79.228	ENSHCOG00000018509	cpsf1	96	79.802	Hippocampus_comes
ENSSPUG00000014396	CPSF1	100	78.419	ENSIPUG00000011259	cpsf1	96	78.388	Ictalurus_punctatus
ENSSPUG00000014396	CPSF1	100	87.284	ENSSTOG00000009957	CPSF1	98	87.284	Ictidomys_tridecemlineatus
ENSSPUG00000014396	CPSF1	100	87.815	ENSJJAG00000023002	Cpsf1	96	87.815	Jaculus_jaculus
ENSSPUG00000014396	CPSF1	91	86.520	ENSKMAG00000001940	cpsf1	95	86.520	Kryptolebias_marmoratus
ENSSPUG00000014396	CPSF1	99	79.640	ENSLBEG00000003601	cpsf1	96	79.713	Labrus_bergylta
ENSSPUG00000014396	CPSF1	100	81.481	ENSLACG00000000233	CPSF1	87	84.856	Latimeria_chalumnae
ENSSPUG00000014396	CPSF1	100	81.062	ENSLOCG00000008484	cpsf1	96	81.636	Lepisosteus_oculatus
ENSSPUG00000014396	CPSF1	99	87.645	ENSLAFG00000022601	CPSF1	99	87.645	Loxodonta_africana
ENSSPUG00000014396	CPSF1	100	88.725	ENSMFAG00000037013	CPSF1	100	88.725	Macaca_fascicularis
ENSSPUG00000014396	CPSF1	100	88.725	ENSMMUG00000007380	CPSF1	100	88.725	Macaca_mulatta
ENSSPUG00000014396	CPSF1	100	88.725	ENSMNEG00000043564	CPSF1	100	88.725	Macaca_nemestrina
ENSSPUG00000014396	CPSF1	100	88.780	ENSMLEG00000043010	CPSF1	100	88.725	Mandrillus_leucophaeus
ENSSPUG00000014396	CPSF1	99	80.818	ENSMAMG00000003803	cpsf1	99	80.969	Mastacembelus_armatus
ENSSPUG00000014396	CPSF1	99	80.418	ENSMZEG00005001168	cpsf1	97	80.634	Maylandia_zebra
ENSSPUG00000014396	CPSF1	100	87.671	ENSMAUG00000003601	Cpsf1	96	87.671	Mesocricetus_auratus
ENSSPUG00000014396	CPSF1	100	87.743	ENSMICG00000015767	CPSF1	96	87.743	Microcebus_murinus
ENSSPUG00000014396	CPSF1	100	87.527	ENSMOCG00000022758	Cpsf1	96	87.527	Microtus_ochrogaster
ENSSPUG00000014396	CPSF1	100	82.125	ENSMMOG00000021245	cpsf1	96	82.197	Mola_mola
ENSSPUG00000014396	CPSF1	99	89.417	ENSMODG00000010755	CPSF1	96	89.417	Monodelphis_domestica
ENSSPUG00000014396	CPSF1	99	80.141	ENSMALG00000020545	cpsf1	96	80.366	Monopterus_albus
ENSSPUG00000014396	CPSF1	100	88.176	MGP_CAROLIEiJ_G0019936	Cpsf1	96	88.176	Mus_caroli
ENSSPUG00000014396	CPSF1	100	88.104	ENSMUSG00000034022	Cpsf1	96	88.104	Mus_musculus
ENSSPUG00000014396	CPSF1	100	88.176	MGP_PahariEiJ_G0019946	Cpsf1	96	88.176	Mus_pahari
ENSSPUG00000014396	CPSF1	100	88.104	MGP_SPRETEiJ_G0020839	Cpsf1	96	88.104	Mus_spretus
ENSSPUG00000014396	CPSF1	98	87.361	ENSMPUG00000006419	CPSF1	93	87.361	Mustela_putorius_furo
ENSSPUG00000014396	CPSF1	77	92.405	ENSMLUG00000000667	-	100	92.222	Myotis_lucifugus
ENSSPUG00000014396	CPSF1	100	87.815	ENSNGAG00000022460	Cpsf1	96	87.815	Nannospalax_galili
ENSSPUG00000014396	CPSF1	100	77.315	ENSNBRG00000000813	cpsf1	96	77.440	Neolamprologus_brichardi
ENSSPUG00000014396	CPSF1	100	88.725	ENSNLEG00000010633	-	100	88.725	Nomascus_leucogenys
ENSSPUG00000014396	CPSF1	85	93.023	ENSMEUG00000014922	CPSF1	84	93.023	Notamacropus_eugenii
ENSSPUG00000014396	CPSF1	63	92.593	ENSOPRG00000004693	-	70	92.593	Ochotona_princeps
ENSSPUG00000014396	CPSF1	100	87.671	ENSODEG00000013995	CPSF1	96	87.671	Octodon_degus
ENSSPUG00000014396	CPSF1	99	82.602	ENSONIG00000007676	cpsf1	96	82.746	Oreochromis_niloticus
ENSSPUG00000014396	CPSF1	60	89.286	ENSOANG00000010716	CPSF1	87	89.286	Ornithorhynchus_anatinus
ENSSPUG00000014396	CPSF1	100	81.259	ENSORLG00000013544	cpsf1	92	90.947	Oryzias_latipes
ENSSPUG00000014396	CPSF1	100	81.400	ENSORLG00020021693	cpsf1	92	90.947	Oryzias_latipes_hni
ENSSPUG00000014396	CPSF1	100	81.330	ENSORLG00015009979	cpsf1	96	80.835	Oryzias_latipes_hsok
ENSSPUG00000014396	CPSF1	100	81.047	ENSOMEG00000011849	cpsf1	96	81.047	Oryzias_melastigma
ENSSPUG00000014396	CPSF1	100	87.527	ENSOGAG00000000315	CPSF1	96	87.527	Otolemur_garnettii
ENSSPUG00000014396	CPSF1	100	89.216	ENSPPAG00000019280	CPSF1	100	89.216	Pan_paniscus
ENSSPUG00000014396	CPSF1	100	58.738	ENSPTRG00000052516	-	100	65.741	Pan_troglodytes
ENSSPUG00000014396	CPSF1	100	89.216	ENSPTRG00000051253	-	100	89.216	Pan_troglodytes
ENSSPUG00000014396	CPSF1	100	89.216	ENSPTRG00000049288	-	100	89.216	Pan_troglodytes
ENSSPUG00000014396	CPSF1	100	88.725	ENSPANG00000015005	CPSF1	100	88.725	Papio_anubis
ENSSPUG00000014396	CPSF1	99	83.597	ENSPKIG00000002582	cpsf1	100	83.359	Paramormyrops_kingsleyae
ENSSPUG00000014396	CPSF1	100	76.389	ENSPMGG00000022177	-	100	83.796	Periophthalmus_magnuspinnatus
ENSSPUG00000014396	CPSF1	99	89.417	ENSPCIG00000009035	CPSF1	96	89.417	Phascolarctos_cinereus
ENSSPUG00000014396	CPSF1	100	78.947	ENSPFOG00000012870	cpsf1	96	79.381	Poecilia_formosa
ENSSPUG00000014396	CPSF1	100	79.184	ENSPREG00000016307	cpsf1	96	79.269	Poecilia_reticulata
ENSSPUG00000014396	CPSF1	100	81.019	ENSPPYG00000018973	CPSF1	96	79.813	Pongo_abelii
ENSSPUG00000014396	CPSF1	94	88.920	ENSPCAG00000011541	CPSF1	93	88.920	Procavia_capensis
ENSSPUG00000014396	CPSF1	100	88.235	ENSPCOG00000020001	CPSF1	100	88.235	Propithecus_coquereli
ENSSPUG00000014396	CPSF1	90	92.286	ENSPVAG00000006761	CPSF1	87	92.286	Pteropus_vampyrus
ENSSPUG00000014396	CPSF1	99	81.037	ENSPNYG00000004906	cpsf1	99	80.942	Pundamilia_nyererei
ENSSPUG00000014396	CPSF1	100	77.858	ENSPNAG00000024395	cpsf1	96	77.714	Pygocentrus_nattereri
ENSSPUG00000014396	CPSF1	100	87.815	ENSRNOG00000030705	Cpsf1	96	87.815	Rattus_norvegicus
ENSSPUG00000014396	CPSF1	100	88.725	ENSRBIG00000044907	CPSF1	100	88.725	Rhinopithecus_bieti
ENSSPUG00000014396	CPSF1	100	88.725	ENSRROG00000044861	CPSF1	100	88.725	Rhinopithecus_roxellana
ENSSPUG00000014396	CPSF1	100	87.527	ENSSBOG00000027177	CPSF1	99	87.527	Saimiri_boliviensis_boliviensis
ENSSPUG00000014396	CPSF1	99	89.273	ENSSHAG00000006500	CPSF1	96	89.273	Sarcophilus_harrisii
ENSSPUG00000014396	CPSF1	99	83.406	ENSSFOG00015004606	cpsf1	100	83.479	Scleropages_formosus
ENSSPUG00000014396	CPSF1	99	80.211	ENSSMAG00000020547	cpsf1	96	80.296	Scophthalmus_maximus
ENSSPUG00000014396	CPSF1	99	82.315	ENSSDUG00000001100	cpsf1	96	82.459	Seriola_dumerili
ENSSPUG00000014396	CPSF1	99	82.662	ENSSLDG00000003619	cpsf1	96	82.806	Seriola_lalandi_dorsalis
ENSSPUG00000014396	CPSF1	89	84.032	ENSSARG00000003643	CPSF1	88	84.032	Sorex_araneus
ENSSPUG00000014396	CPSF1	99	81.083	ENSSPAG00000005349	cpsf1	96	81.250	Stegastes_partitus
ENSSPUG00000014396	CPSF1	99	87.066	ENSSSCG00000005906	CPSF1	96	87.066	Sus_scrofa
ENSSPUG00000014396	CPSF1	99	79.930	ENSTRUG00000013134	cpsf1	99	79.860	Takifugu_rubripes
ENSSPUG00000014396	CPSF1	99	81.487	ENSTNIG00000014027	cpsf1	96	81.487	Tetraodon_nigroviridis
ENSSPUG00000014396	CPSF1	77	85.038	ENSTBEG00000001756	CPSF1	89	84.470	Tupaia_belangeri
ENSSPUG00000014396	CPSF1	100	83.796	ENSTTRG00000001937	CPSF1	85	90.155	Tursiops_truncatus
ENSSPUG00000014396	CPSF1	99	88.150	ENSUAMG00000006476	CPSF1	97	88.150	Ursus_americanus
ENSSPUG00000014396	CPSF1	68	51.678	ENSVPAG00000000157	-	50	84.120	Vicugna_pacos
ENSSPUG00000014396	CPSF1	100	88.235	ENSVVUG00000005940	-	100	88.235	Vulpes_vulpes
ENSSPUG00000014396	CPSF1	100	80.446	ENSXCOG00000003608	cpsf1	96	80.590	Xiphophorus_couchianus
ENSSPUG00000014396	CPSF1	100	79.942	ENSXMAG00000005798	cpsf1	96	79.828	Xiphophorus_maculatus