EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000014544 (Gene tree)
Gene ID: -
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Minus strand
Length: 99946 bases
Position: chrQEPC01010671.1:983351-1083296
Accession: 17854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000019308	Upf2	PF04050.14	4e-34	1	1
ENSSPUP00000019270	Upf2	PF04050.14	2.1e-33	1	1
ENSSPUP00000019296	Upf2	PF04050.14	1.3e-32	1	1
ENSSPUP00000019332	Upf2	PF04050.14	1.6e-32	1	1
ENSSPUP00000019270	MIF4G	PF02854.19	7.2e-63	1	3
ENSSPUP00000019270	MIF4G	PF02854.19	7.2e-63	2	3
ENSSPUP00000019270	MIF4G	PF02854.19	7.2e-63	3	3
ENSSPUP00000019332	MIF4G	PF02854.19	7.5e-63	1	3
ENSSPUP00000019332	MIF4G	PF02854.19	7.5e-63	2	3
ENSSPUP00000019332	MIF4G	PF02854.19	7.5e-63	3	3
ENSSPUP00000019296	MIF4G	PF02854.19	1.5e-61	1	3
ENSSPUP00000019296	MIF4G	PF02854.19	1.5e-61	2	3
ENSSPUP00000019296	MIF4G	PF02854.19	1.5e-61	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000020525	UPF2-201	3783	-	ENSSPUP00000019270	1260 (aa)	-	-
ENSSPUT00000020591	UPF2-204	3747	-	ENSSPUP00000019332	1248 (aa)	-	-
ENSSPUT00000020566	UPF2-203	807	-	ENSSPUP00000019308	268 (aa)	-	-
ENSSPUT00000020553	UPF2-202	3675	-	ENSSPUP00000019296	1224 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000014544's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000014544's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000014544	UPF2	99	89.929	ENSG00000151461	UPF2	99	89.929	Homo_sapiens
ENSSPUG00000014544	UPF2	99	80.470	ENSAPOG00000015837	UPF2	100	80.551	Acanthochromis_polyacanthus
ENSSPUG00000014544	UPF2	99	90.787	ENSAMEG00000004586	UPF2	99	90.787	Ailuropoda_melanoleuca
ENSSPUG00000014544	UPF2	99	80.625	ENSACIG00000018078	UPF2	100	80.781	Amphilophus_citrinellus
ENSSPUG00000014544	UPF2	99	80.607	ENSAOCG00000016766	UPF2	100	80.414	Amphiprion_ocellaris
ENSSPUG00000014544	UPF2	99	80.685	ENSAPEG00000019084	UPF2	100	80.494	Amphiprion_percula
ENSSPUG00000014544	UPF2	99	80.467	ENSATEG00000021677	UPF2	99	80.623	Anabas_testudineus
ENSSPUG00000014544	UPF2	99	85.408	ENSAPLG00000010287	UPF2	91	89.667	Anas_platyrhynchos
ENSSPUG00000014544	UPF2	99	91.732	ENSACAG00000009259	UPF2	99	91.732	Anolis_carolinensis
ENSSPUG00000014544	UPF2	99	80.016	ENSANAG00000028451	UPF2	99	79.858	Aotus_nancymaae
ENSSPUG00000014544	UPF2	99	80.718	ENSACLG00000012696	UPF2	99	80.874	Astatotilapia_calliptera
ENSSPUG00000014544	UPF2	99	80.751	ENSAMXG00000013700	UPF2	99	80.793	Astyanax_mexicanus
ENSSPUG00000014544	UPF2	99	90.787	ENSBTAG00000000288	UPF2	99	100.000	Bos_taurus
ENSSPUG00000014544	UPF2	99	89.449	ENSCJAG00000020685	UPF2	99	89.449	Callithrix_jacchus
ENSSPUG00000014544	UPF2	99	90.866	ENSCAFG00000004839	UPF2	99	90.866	Canis_familiaris
ENSSPUG00000014544	UPF2	95	97.044	ENSCAFG00020005882	UPF2	100	96.939	Canis_lupus_dingo
ENSSPUG00000014544	UPF2	99	90.709	ENSCHIG00000020359	UPF2	99	90.709	Capra_hircus
ENSSPUG00000014544	UPF2	99	90.079	ENSTSYG00000000935	UPF2	97	96.591	Carlito_syrichta
ENSSPUG00000014544	UPF2	90	80.120	ENSCAPG00000016658	UPF2	94	80.311	Cavia_aperea
ENSSPUG00000014544	UPF2	98	88.114	ENSCPOG00000008809	UPF2	100	87.718	Cavia_porcellus
ENSSPUG00000014544	UPF2	99	82.677	ENSCCAG00000035991	UPF2	99	82.677	Cebus_capucinus
ENSSPUG00000014544	UPF2	99	90.087	ENSCATG00000032679	UPF2	99	90.087	Cercocebus_atys
ENSSPUG00000014544	UPF2	99	89.449	ENSCLAG00000011434	UPF2	99	89.055	Chinchilla_lanigera
ENSSPUG00000014544	UPF2	99	90.087	ENSCSAG00000013372	UPF2	99	90.087	Chlorocebus_sabaeus
ENSSPUG00000014544	UPF2	86	93.050	ENSCHOG00000000422	UPF2	89	92.278	Choloepus_hoffmanni
ENSSPUG00000014544	UPF2	99	92.041	ENSCPBG00000027823	UPF2	100	91.647	Chrysemys_picta_bellii
ENSSPUG00000014544	UPF2	78	47.788	ENSCSAVG00000007772	-	99	47.379	Ciona_savignyi
ENSSPUG00000014544	UPF2	99	83.828	ENSCANG00000040396	UPF2	100	83.950	Colobus_angolensis_palliatus
ENSSPUG00000014544	UPF2	99	90.157	ENSCGRG00001019347	Upf2	99	90.551	Cricetulus_griseus_chok1gshd
ENSSPUG00000014544	UPF2	99	90.157	ENSCGRG00000017993	Upf2	99	90.551	Cricetulus_griseus_crigri
ENSSPUG00000014544	UPF2	89	80.475	ENSCSEG00000003520	UPF2	91	80.210	Cynoglossus_semilaevis
ENSSPUG00000014544	UPF2	98	80.157	ENSCVAG00000006167	UPF2	94	86.264	Cyprinodon_variegatus
ENSSPUG00000014544	UPF2	99	90.394	ENSDNOG00000018160	UPF2	99	90.394	Dasypus_novemcinctus
ENSSPUG00000014544	UPF2	99	89.134	ENSDORG00000002478	Upf2	99	89.528	Dipodomys_ordii
ENSSPUG00000014544	UPF2	88	35.222	FBgn0029992	Upf2	95	35.519	Drosophila_melanogaster
ENSSPUG00000014544	UPF2	72	96.350	ENSETEG00000011583	-	67	96.212	Echinops_telfairi
ENSSPUG00000014544	UPF2	61	75.168	ENSEBUG00000012448	-	86	76.552	Eptatretus_burgeri
ENSSPUG00000014544	UPF2	99	90.079	ENSEASG00005019274	UPF2	99	95.046	Equus_asinus_asinus
ENSSPUG00000014544	UPF2	99	90.079	ENSECAG00000017022	UPF2	99	89.685	Equus_caballus
ENSSPUG00000014544	UPF2	80	91.346	ENSEEUG00000007819	UPF2	82	91.346	Erinaceus_europaeus
ENSSPUG00000014544	UPF2	99	79.082	ENSELUG00000012014	UPF2	94	88.827	Esox_lucius
ENSSPUG00000014544	UPF2	99	96.111	ENSFCAG00000005785	UPF2	99	91.102	Felis_catus
ENSSPUG00000014544	UPF2	99	92.283	ENSFALG00000001889	UPF2	98	92.283	Ficedula_albicollis
ENSSPUG00000014544	UPF2	99	89.134	ENSFDAG00000014348	UPF2	99	89.134	Fukomys_damarensis
ENSSPUG00000014544	UPF2	91	82.373	ENSFHEG00000009826	UPF2	98	77.386	Fundulus_heteroclitus
ENSSPUG00000014544	UPF2	89	80.656	ENSGMOG00000005557	UPF2	100	78.890	Gadus_morhua
ENSSPUG00000014544	UPF2	99	91.896	ENSGALG00000033772	UPF2	99	91.896	Gallus_gallus
ENSSPUG00000014544	UPF2	99	79.984	ENSGAFG00000020867	UPF2	99	79.829	Gambusia_affinis
ENSSPUG00000014544	UPF2	89	82.140	ENSGACG00000001080	UPF2	100	79.969	Gasterosteus_aculeatus
ENSSPUG00000014544	UPF2	99	92.520	ENSGAGG00000002700	UPF2	99	92.520	Gopherus_agassizii
ENSSPUG00000014544	UPF2	99	89.929	ENSGGOG00000001479	UPF2	99	89.929	Gorilla_gorilla
ENSSPUG00000014544	UPF2	99	80.703	ENSHBUG00000004249	UPF2	100	80.859	Haplochromis_burtoni
ENSSPUG00000014544	UPF2	99	80.048	ENSHGLG00000003822	-	94	91.525	Heterocephalus_glaber_female
ENSSPUG00000014544	UPF2	99	89.370	ENSHGLG00000015176	-	99	88.976	Heterocephalus_glaber_female
ENSSPUG00000014544	UPF2	99	87.579	ENSHGLG00100010036	UPF2	88	92.120	Heterocephalus_glaber_male
ENSSPUG00000014544	UPF2	99	78.383	ENSHCOG00000004025	UPF2	99	78.383	Hippocampus_comes
ENSSPUG00000014544	UPF2	99	80.328	ENSIPUG00000015524	UPF2	99	80.796	Ictalurus_punctatus
ENSSPUG00000014544	UPF2	99	89.843	ENSSTOG00000013075	UPF2	99	90.236	Ictidomys_tridecemlineatus
ENSSPUG00000014544	UPF2	99	88.819	ENSJJAG00000004913	Upf2	99	88.898	Jaculus_jaculus
ENSSPUG00000014544	UPF2	90	82.624	ENSKMAG00000001071	UPF2	92	82.408	Kryptolebias_marmoratus
ENSSPUG00000014544	UPF2	99	81.014	ENSLBEG00000016394	-	100	81.144	Labrus_bergylta
ENSSPUG00000014544	UPF2	80	79.154	ENSLBEG00000000728	-	93	79.253	Labrus_bergylta
ENSSPUG00000014544	UPF2	98	77.508	ENSLACG00000015945	UPF2	94	92.179	Latimeria_chalumnae
ENSSPUG00000014544	UPF2	98	84.227	ENSLOCG00000015698	UPF2	94	89.888	Lepisosteus_oculatus
ENSSPUG00000014544	UPF2	99	90.008	ENSMFAG00000043865	UPF2	99	90.008	Macaca_fascicularis
ENSSPUG00000014544	UPF2	99	90.008	ENSMMUG00000008241	UPF2	99	90.008	Macaca_mulatta
ENSSPUG00000014544	UPF2	80	88.538	ENSMNEG00000008062	UPF2	99	88.541	Macaca_nemestrina
ENSSPUG00000014544	UPF2	63	90.588	ENSMNEG00000035275	-	81	91.176	Macaca_nemestrina
ENSSPUG00000014544	UPF2	93	94.928	ENSMLEG00000036120	UPF2	99	95.157	Mandrillus_leucophaeus
ENSSPUG00000014544	UPF2	99	79.872	ENSMAMG00000018276	UPF2	100	80.511	Mastacembelus_armatus
ENSSPUG00000014544	UPF2	99	80.718	ENSMZEG00005021595	UPF2	99	80.874	Maylandia_zebra
ENSSPUG00000014544	UPF2	99	90.881	ENSMGAG00000004573	UPF2	100	90.881	Meleagris_gallopavo
ENSSPUG00000014544	UPF2	99	87.874	ENSMAUG00000016512	Upf2	99	88.268	Mesocricetus_auratus
ENSSPUG00000014544	UPF2	94	96.429	ENSMICG00000001716	UPF2	99	96.429	Microcebus_murinus
ENSSPUG00000014544	UPF2	99	89.370	ENSMOCG00000008263	Upf2	99	89.370	Microtus_ochrogaster
ENSSPUG00000014544	UPF2	99	80.449	ENSMMOG00000006528	UPF2	100	79.023	Mola_mola
ENSSPUG00000014544	UPF2	99	91.417	ENSMODG00000016794	UPF2	99	91.417	Monodelphis_domestica
ENSSPUG00000014544	UPF2	99	79.672	ENSMALG00000002663	UPF2	100	80.297	Monopterus_albus
ENSSPUG00000014544	UPF2	99	89.606	MGP_CAROLIEiJ_G0023157	Upf2	99	93.130	Mus_caroli
ENSSPUG00000014544	UPF2	99	89.685	ENSMUSG00000043241	Upf2	99	92.366	Mus_musculus
ENSSPUG00000014544	UPF2	99	89.370	MGP_PahariEiJ_G0019217	Upf2	99	92.176	Mus_pahari
ENSSPUG00000014544	UPF2	99	89.921	MGP_SPRETEiJ_G0024075	Upf2	99	92.366	Mus_spretus
ENSSPUG00000014544	UPF2	99	90.709	ENSMPUG00000001064	UPF2	99	90.709	Mustela_putorius_furo
ENSSPUG00000014544	UPF2	99	89.709	ENSMLUG00000000228	UPF2	100	89.631	Myotis_lucifugus
ENSSPUG00000014544	UPF2	99	80.718	ENSNBRG00000013629	UPF2	99	80.874	Neolamprologus_brichardi
ENSSPUG00000014544	UPF2	99	90.008	ENSNLEG00000012058	UPF2	99	90.008	Nomascus_leucogenys
ENSSPUG00000014544	UPF2	80	95.349	ENSOPRG00000006801	-	78	97.183	Ochotona_princeps
ENSSPUG00000014544	UPF2	99	89.764	ENSODEG00000001290	UPF2	99	89.370	Octodon_degus
ENSSPUG00000014544	UPF2	99	81.060	ENSONIG00000017991	UPF2	99	81.216	Oreochromis_niloticus
ENSSPUG00000014544	UPF2	99	89.362	ENSOCUG00000006230	UPF2	100	89.107	Oryctolagus_cuniculus
ENSSPUG00000014544	UPF2	99	79.891	ENSORLG00000017189	UPF2	99	80.359	Oryzias_latipes
ENSSPUG00000014544	UPF2	99	79.813	ENSORLG00020005969	UPF2	99	80.281	Oryzias_latipes_hni
ENSSPUG00000014544	UPF2	99	79.891	ENSORLG00015005713	UPF2	99	80.359	Oryzias_latipes_hsok
ENSSPUG00000014544	UPF2	99	77.127	ENSOMEG00000023420	UPF2	98	77.205	Oryzias_melastigma
ENSSPUG00000014544	UPF2	99	90.079	ENSOGAG00000005796	UPF2	99	90.079	Otolemur_garnettii
ENSSPUG00000014544	UPF2	99	90.566	ENSOARG00000014587	UPF2	99	90.566	Ovis_aries
ENSSPUG00000014544	UPF2	99	86.239	ENSPPAG00000037953	UPF2	100	86.457	Pan_paniscus
ENSSPUG00000014544	UPF2	99	91.102	ENSPPRG00000000690	UPF2	99	91.102	Panthera_pardus
ENSSPUG00000014544	UPF2	99	91.102	ENSPTIG00000008867	UPF2	99	91.102	Panthera_tigris_altaica
ENSSPUG00000014544	UPF2	99	89.929	ENSPTRG00000002291	UPF2	99	89.929	Pan_troglodytes
ENSSPUG00000014544	UPF2	99	90.087	ENSPANG00000023399	UPF2	99	90.087	Papio_anubis
ENSSPUG00000014544	UPF2	99	80.172	ENSPKIG00000025502	UPF2	94	86.517	Paramormyrops_kingsleyae
ENSSPUG00000014544	UPF2	59	89.907	ENSPSIG00000015158	UPF2	95	89.907	Pelodiscus_sinensis
ENSSPUG00000014544	UPF2	99	79.216	ENSPMGG00000005259	UPF2	100	79.451	Periophthalmus_magnuspinnatus
ENSSPUG00000014544	UPF2	91	85.131	ENSPEMG00000015731	Upf2	99	85.131	Peromyscus_maniculatus_bairdii
ENSSPUG00000014544	UPF2	99	91.260	ENSPCIG00000006656	UPF2	100	91.253	Phascolarctos_cinereus
ENSSPUG00000014544	UPF2	99	80.562	ENSPFOG00000017118	UPF2	99	80.250	Poecilia_formosa
ENSSPUG00000014544	UPF2	99	80.530	ENSPLAG00000005094	UPF2	99	80.218	Poecilia_latipinna
ENSSPUG00000014544	UPF2	99	80.530	ENSPMEG00000017009	UPF2	99	80.218	Poecilia_mexicana
ENSSPUG00000014544	UPF2	99	80.234	ENSPREG00000021880	UPF2	100	80.312	Poecilia_reticulata
ENSSPUG00000014544	UPF2	72	96.907	ENSPPYG00000002089	-	99	92.216	Pongo_abelii
ENSSPUG00000014544	UPF2	90	82.629	ENSPCAG00000000684	UPF2	90	82.629	Procavia_capensis
ENSSPUG00000014544	UPF2	99	86.840	ENSPCOG00000021656	UPF2	100	87.045	Propithecus_coquereli
ENSSPUG00000014544	UPF2	99	84.343	ENSPVAG00000017286	UPF2	99	84.343	Pteropus_vampyrus
ENSSPUG00000014544	UPF2	99	78.203	ENSPNYG00000017096	UPF2	100	78.359	Pundamilia_nyererei
ENSSPUG00000014544	UPF2	99	81.421	ENSPNAG00000009357	UPF2	99	81.889	Pygocentrus_nattereri
ENSSPUG00000014544	UPF2	99	84.694	ENSRNOG00000023593	Upf2	99	100.000	Rattus_norvegicus
ENSSPUG00000014544	UPF2	99	89.277	ENSRBIG00000037780	UPF2	100	89.595	Rhinopithecus_bieti
ENSSPUG00000014544	UPF2	99	89.536	ENSRROG00000043547	UPF2	99	89.929	Rhinopithecus_roxellana
ENSSPUG00000014544	UPF2	99	88.819	ENSSBOG00000020012	UPF2	99	89.213	Saimiri_boliviensis_boliviensis
ENSSPUG00000014544	UPF2	99	80.265	ENSSFOG00015023788	upf2	100	79.829	Scleropages_formosus
ENSSPUG00000014544	UPF2	88	83.784	ENSSMAG00000007637	UPF2	100	78.176	Scophthalmus_maximus
ENSSPUG00000014544	UPF2	99	80.964	ENSSDUG00000017244	UPF2	100	81.547	Seriola_dumerili
ENSSPUG00000014544	UPF2	99	80.785	ENSSLDG00000016866	UPF2	100	81.380	Seriola_lalandi_dorsalis
ENSSPUG00000014544	UPF2	99	88.819	ENSSARG00000008615	UPF2	99	88.819	Sorex_araneus
ENSSPUG00000014544	UPF2	73	89.394	ENSSPAG00000010479	-	90	87.281	Stegastes_partitus
ENSSPUG00000014544	UPF2	72	96.907	ENSSSCG00000011117	-	99	91.935	Sus_scrofa
ENSSPUG00000014544	UPF2	98	91.877	ENSTGUG00000002163	-	100	91.877	Taeniopygia_guttata
ENSSPUG00000014544	UPF2	99	80.109	ENSTRUG00000007519	UPF2	99	80.265	Takifugu_rubripes
ENSSPUG00000014544	UPF2	99	77.449	ENSTNIG00000004453	UPF2	94	79.881	Tetraodon_nigroviridis
ENSSPUG00000014544	UPF2	92	82.642	ENSTBEG00000012679	UPF2	93	83.065	Tupaia_belangeri
ENSSPUG00000014544	UPF2	99	90.079	ENSTTRG00000016388	UPF2	99	89.764	Tursiops_truncatus
ENSSPUG00000014544	UPF2	88	100.000	ENSUAMG00000023560	UPF2	98	100.000	Ursus_americanus
ENSSPUG00000014544	UPF2	99	90.787	ENSUMAG00000012953	UPF2	95	90.787	Ursus_maritimus
ENSSPUG00000014544	UPF2	83	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSSPUG00000014544	UPF2	99	90.866	ENSVVUG00000006166	UPF2	99	90.866	Vulpes_vulpes
ENSSPUG00000014544	UPF2	99	81.484	ENSXETG00000033103	UPF2	91	86.073	Xenopus_tropicalis
ENSSPUG00000014544	UPF2	99	79.891	ENSXCOG00000011604	UPF2	100	79.813	Xiphophorus_couchianus
ENSSPUG00000014544	UPF2	99	80.140	ENSXMAG00000017209	UPF2	99	79.829	Xiphophorus_maculatus