EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000015369 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 95120 bases
Position: chrQEPC01011365.1:1239231-1334350
Accession: 11102
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000019993	ResIII	PF04851.15	2.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000021292	SMARCAL1-201	3263	-	ENSSPUP00000019993	993 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000015369's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000015369's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000015369	SMARCAL1	99	56.238	ENSG00000138375	SMARCAL1	99	72.500	Homo_sapiens
ENSSPUG00000015369	SMARCAL1	75	63.298	ENSAPOG00000020156	SMARCAL1	83	62.065	Acanthochromis_polyacanthus
ENSSPUG00000015369	SMARCAL1	68	65.136	ENSACIG00000001500	smarcal1	89	65.136	Amphilophus_citrinellus
ENSSPUG00000015369	SMARCAL1	71	65.634	ENSAOCG00000014266	SMARCAL1	84	61.868	Amphiprion_ocellaris
ENSSPUG00000015369	SMARCAL1	74	63.624	ENSAPEG00000015861	SMARCAL1	83	62.047	Amphiprion_percula
ENSSPUG00000015369	SMARCAL1	72	64.771	ENSATEG00000020624	SMARCAL1	78	64.771	Anabas_testudineus
ENSSPUG00000015369	SMARCAL1	99	63.908	ENSAPLG00000009864	SMARCAL1	100	63.908	Anas_platyrhynchos
ENSSPUG00000015369	SMARCAL1	99	66.499	ENSACAG00000004612	SMARCAL1	99	66.499	Anolis_carolinensis
ENSSPUG00000015369	SMARCAL1	69	67.442	ENSACLG00000015990	SMARCAL1	76	67.442	Astatotilapia_calliptera
ENSSPUG00000015369	SMARCAL1	73	66.528	ENSAMXG00000003350	smarcal1	81	66.528	Astyanax_mexicanus
ENSSPUG00000015369	SMARCAL1	99	75.152	ENSCPBG00000013599	SMARCAL1	99	75.152	Chrysemys_picta_bellii
ENSSPUG00000015369	SMARCAL1	67	47.887	ENSCING00000009308	-	99	47.887	Ciona_intestinalis
ENSSPUG00000015369	SMARCAL1	71	63.727	ENSCSEG00000010785	SMARCAL1	79	63.727	Cynoglossus_semilaevis
ENSSPUG00000015369	SMARCAL1	72	65.411	ENSCVAG00000018780	SMARCAL1	87	65.411	Cyprinodon_variegatus
ENSSPUG00000015369	SMARCAL1	53	55.410	ENSEBUG00000011906	SMARCAL1	74	55.410	Eptatretus_burgeri
ENSSPUG00000015369	SMARCAL1	72	63.636	ENSELUG00000010440	-	99	51.210	Esox_lucius
ENSSPUG00000015369	SMARCAL1	99	64.357	ENSFALG00000003981	SMARCAL1	99	64.558	Ficedula_albicollis
ENSSPUG00000015369	SMARCAL1	72	64.256	ENSFHEG00000008380	SMARCAL1	86	63.661	Fundulus_heteroclitus
ENSSPUG00000015369	SMARCAL1	99	63.764	ENSGALG00000011475	RPL37A	99	63.764	Gallus_gallus
ENSSPUG00000015369	SMARCAL1	60	69.832	ENSGACG00000006073	SMARCAL1	100	69.832	Gasterosteus_aculeatus
ENSSPUG00000015369	SMARCAL1	93	70.664	ENSGAGG00000015660	SMARCAL1	99	70.664	Gopherus_agassizii
ENSSPUG00000015369	SMARCAL1	69	67.442	ENSHBUG00000002973	smarcal1	76	67.442	Haplochromis_burtoni
ENSSPUG00000015369	SMARCAL1	74	59.791	ENSHCOG00000017921	smarcal1	91	59.791	Hippocampus_comes
ENSSPUG00000015369	SMARCAL1	69	65.262	ENSKMAG00000012023	SMARCAL1	80	64.799	Kryptolebias_marmoratus
ENSSPUG00000015369	SMARCAL1	73	59.892	ENSLBEG00000003493	smarcal1	85	59.892	Labrus_bergylta
ENSSPUG00000015369	SMARCAL1	65	64.795	ENSLBEG00000022915	smarcal1	86	64.795	Labrus_bergylta
ENSSPUG00000015369	SMARCAL1	99	54.054	ENSLACG00000010974	SMARCAL1	99	54.054	Latimeria_chalumnae
ENSSPUG00000015369	SMARCAL1	66	68.929	ENSLOCG00000009637	smarcal1	82	68.929	Lepisosteus_oculatus
ENSSPUG00000015369	SMARCAL1	96	66.185	ENSMAMG00000000828	SMARCAL1	98	66.185	Mastacembelus_armatus
ENSSPUG00000015369	SMARCAL1	69	67.297	ENSMZEG00005007660	SMARCAL1	76	67.297	Maylandia_zebra
ENSSPUG00000015369	SMARCAL1	99	63.828	ENSMGAG00000011658	SMARCAL1	99	63.819	Meleagris_gallopavo
ENSSPUG00000015369	SMARCAL1	68	60.171	ENSMMOG00000003842	smarcal1	87	60.171	Mola_mola
ENSSPUG00000015369	SMARCAL1	79	67.211	ENSMODG00000015544	SMARCAL1	84	67.211	Monodelphis_domestica
ENSSPUG00000015369	SMARCAL1	65	67.786	ENSNBRG00000016273	smarcal1	84	67.786	Neolamprologus_brichardi
ENSSPUG00000015369	SMARCAL1	65	69.859	ENSMEUG00000004395	SMARCAL1	80	69.397	Notamacropus_eugenii
ENSSPUG00000015369	SMARCAL1	69	67.728	ENSONIG00000009036	smarcal1	99	67.007	Oreochromis_niloticus
ENSSPUG00000015369	SMARCAL1	78	61.204	ENSORLG00000016455	SMARCAL1	85	61.204	Oryzias_latipes
ENSSPUG00000015369	SMARCAL1	78	61.460	ENSORLG00020001610	SMARCAL1	85	61.460	Oryzias_latipes_hni
ENSSPUG00000015369	SMARCAL1	78	61.538	ENSORLG00015001865	SMARCAL1	85	61.538	Oryzias_latipes_hsok
ENSSPUG00000015369	SMARCAL1	69	65.418	ENSOMEG00000001845	smarcal1	81	65.318	Oryzias_melastigma
ENSSPUG00000015369	SMARCAL1	73	62.414	ENSPMGG00000019092	SMARCAL1	82	62.414	Periophthalmus_magnuspinnatus
ENSSPUG00000015369	SMARCAL1	99	53.158	ENSPCIG00000022514	SMARCAL1	99	53.549	Phascolarctos_cinereus
ENSSPUG00000015369	SMARCAL1	72	65.042	ENSPFOG00000000560	SMARCAL1	82	64.295	Poecilia_formosa
ENSSPUG00000015369	SMARCAL1	72	65.320	ENSPMEG00000018146	SMARCAL1	82	64.569	Poecilia_mexicana
ENSSPUG00000015369	SMARCAL1	50	64.471	ENSPREG00000009591	SMARCAL1	78	71.296	Poecilia_reticulata
ENSSPUG00000015369	SMARCAL1	73	67.313	ENSPNAG00000014900	smarcal1	77	67.313	Pygocentrus_nattereri
ENSSPUG00000015369	SMARCAL1	83	61.591	ENSSHAG00000013538	SMARCAL1	91	61.454	Sarcophilus_harrisii
ENSSPUG00000015369	SMARCAL1	73	63.549	ENSSMAG00000010427	SMARCAL1	79	63.549	Scophthalmus_maximus
ENSSPUG00000015369	SMARCAL1	69	67.294	ENSSDUG00000017470	SMARCAL1	81	62.857	Seriola_dumerili
ENSSPUG00000015369	SMARCAL1	73	64.828	ENSSLDG00000007224	SMARCAL1	99	53.440	Seriola_lalandi_dorsalis
ENSSPUG00000015369	SMARCAL1	65	68.397	ENSSPAG00000003742	smarcal1	83	68.397	Stegastes_partitus
ENSSPUG00000015369	SMARCAL1	72	62.517	ENSSSCG00000035501	SMARCAL1	78	62.587	Sus_scrofa
ENSSPUG00000015369	SMARCAL1	74	74.302	ENSTGUG00000005079	SMARCAL1	100	74.302	Taeniopygia_guttata
ENSSPUG00000015369	SMARCAL1	71	58.205	ENSTRUG00000010701	SMARCAL1	80	58.205	Takifugu_rubripes
ENSSPUG00000015369	SMARCAL1	99	48.949	ENSTTRG00000009001	SMARCAL1	99	48.759	Tursiops_truncatus
ENSSPUG00000015369	SMARCAL1	99	58.659	ENSXETG00000000465	smarcal1	99	58.659	Xenopus_tropicalis