EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSPUG00000016332 (Gene tree)
Gene ID: -
Gene Symbol: SETX
Alias: ALS4|AOA2|KIAA0625|SCAR1|Sen1
Full Name: senataxin
Gene Type: protein_coding
Species: Sphenodon_punctatus
Status: putative
Strand: Plus strand
Length: 53324 bases
Position: chrQEPC01004477.1:1430958-1484281
Accession: 445
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSPUP00000021686	SEN1_N	PF12726.7	6.3e-14	1	1
ENSSPUP00000021713	SEN1_N	PF12726.7	6.4e-14	1	1
ENSSPUP00000021658	SEN1_N	PF12726.7	6.5e-14	1	1
ENSSPUP00000021731	SEN1_N	PF12726.7	7.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSPUT00000023081	SETX-201	7797	-	ENSSPUP00000021658	2598 (aa)	-	-
ENSSPUT00000023109	SETX-202	7791	-	ENSSPUP00000021686	2596 (aa)	-	-
ENSSPUT00000023156	SETX-204	7359	-	ENSSPUP00000021731	2452 (aa)	-	-
ENSSPUT00000023188	SETX-205	6140	-	ENSSPUP00000021762	1672 (aa)	-	-
ENSSPUT00000023138	SETX-203	7785	-	ENSSPUP00000021713	2594 (aa)	-	-
ENSSPUT00000023212	SETX-206	2295	-	ENSSPUP00000021785	764 (aa)	-	-

Gene Model

Click here to download ENSSPUG00000016332's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSPUG00000016332's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSPUG00000016332	SETX	88	70.494	ENSG00000107290	SETX	88	66.519	Homo_sapiens
ENSSPUG00000016332	SETX	75	47.585	ENSAMXG00000014406	-	86	42.540	Astyanax_mexicanus
ENSSPUG00000016332	SETX	88	71.451	ENSCJAG00000018245	SETX	94	59.635	Callithrix_jacchus
ENSSPUG00000016332	SETX	83	73.244	ENSCPOG00000001492	SETX	83	73.244	Cavia_porcellus
ENSSPUG00000016332	SETX	81	75.145	ENSCLAG00000012582	SETX	87	75.145	Chinchilla_lanigera
ENSSPUG00000016332	SETX	66	76.559	ENSETEG00000008111	-	65	76.559	Echinops_telfairi
ENSSPUG00000016332	SETX	81	71.770	ENSECAG00000012019	SETX	88	68.053	Equus_caballus
ENSSPUG00000016332	SETX	84	43.252	ENSELUG00000022536	-	85	43.208	Esox_lucius
ENSSPUG00000016332	SETX	90	70.794	ENSFCAG00000007102	SETX	89	69.612	Felis_catus
ENSSPUG00000016332	SETX	84	70.016	ENSFALG00000001464	SETX	91	66.521	Ficedula_albicollis
ENSSPUG00000016332	SETX	88	67.624	ENSGGOG00000027664	SETX	99	56.429	Gorilla_gorilla
ENSSPUG00000016332	SETX	74	47.429	ENSIPUG00000006685	setx	90	41.749	Ictalurus_punctatus
ENSSPUG00000016332	SETX	86	53.772	ENSLOCG00000004264	SETX	92	53.933	Lepisosteus_oculatus
ENSSPUG00000016332	SETX	85	72.310	ENSMOCG00000000848	Setx	85	72.310	Microtus_ochrogaster
ENSSPUG00000016332	SETX	84	72.819	MGP_PahariEiJ_G0024821	Setx	83	72.819	Mus_pahari
ENSSPUG00000016332	SETX	83	65.630	ENSNLEG00000012839	SETX	85	65.630	Nomascus_leucogenys
ENSSPUG00000016332	SETX	83	71.558	ENSOCUG00000005616	SETX	85	70.070	Oryctolagus_cuniculus
ENSSPUG00000016332	SETX	90	70.175	ENSOGAG00000013387	SETX	84	70.175	Otolemur_garnettii
ENSSPUG00000016332	SETX	91	70.335	ENSPPAG00000004108	SETX	99	56.548	Pan_paniscus
ENSSPUG00000016332	SETX	90	70.317	ENSPPRG00000012867	SETX	88	70.317	Panthera_pardus
ENSSPUG00000016332	SETX	90	70.654	ENSPTIG00000021101	SETX	88	70.317	Panthera_tigris_altaica
ENSSPUG00000016332	SETX	91	70.335	ENSPTRG00000021495	SETX	99	56.548	Pan_troglodytes
ENSSPUG00000016332	SETX	86	47.668	ENSPKIG00000025162	SETX	90	45.937	Paramormyrops_kingsleyae
ENSSPUG00000016332	SETX	84	71.770	ENSSSCG00000005724	SETX	80	73.455	Sus_scrofa
ENSSPUG00000016332	SETX	89	69.378	ENSTGUG00000005117	SETX	97	65.557	Taeniopygia_guttata
ENSSPUG00000016332	SETX	83	65.116	ENSXETG00000006254	setx	90	65.116	Xenopus_tropicalis