EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000000091 (Gene tree)
Gene ID: 100037939
Gene Symbol: APOBEC3B
Alias: A3Z2-Z3|A3Z2_1|A3Z3|A3Z3_1|APOBEC3|APOBEC3F|APOBEC3F1|APOBEC3F2|APOBEC3Z2|APOBEC3Z3
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3B
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 21648 bases
Position: chr5:9094803-9116450
Accession: 100037939
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000000095	APOBEC_N	PF08210.11	9.2e-86	1	2
ENSSSCP00000000095	APOBEC_N	PF08210.11	9.2e-86	2	2
ENSSSCP00000051647	APOBEC_N	PF08210.11	1.3e-85	1	2
ENSSSCP00000051647	APOBEC_N	PF08210.11	1.3e-85	2	2
ENSSSCP00000038941	APOBEC_N	PF08210.11	4.4e-47	1	1
ENSSSCP00000050419	APOBEC_N	PF08210.11	4.9e-47	1	1
ENSSSCP00000041829	APOBEC_N	PF08210.11	1.9e-40	1	1
ENSSSCP00000049922	APOBEC_N	PF08210.11	2.8e-39	1	1
ENSSSCP00000038508	APOBEC_N	PF08210.11	3.3e-39	1	1
ENSSSCP00000049864	APOBEC_N	PF08210.11	3.3e-39	1	1
ENSSSCP00000000095	APOBEC_C	PF05240.14	1.8e-61	1	2
ENSSSCP00000000095	APOBEC_C	PF05240.14	1.8e-61	2	2
ENSSSCP00000051647	APOBEC_C	PF05240.14	2.3e-61	1	2
ENSSSCP00000051647	APOBEC_C	PF05240.14	2.3e-61	2	2
ENSSSCP00000038941	APOBEC_C	PF05240.14	3.3e-31	1	1
ENSSSCP00000050419	APOBEC_C	PF05240.14	3.7e-31	1	1
ENSSSCP00000041829	APOBEC_C	PF05240.14	4.1e-29	1	1
ENSSSCP00000049922	APOBEC_C	PF05240.14	4.2e-29	1	1
ENSSSCP00000038508	APOBEC_C	PF05240.14	4.5e-29	1	1
ENSSSCP00000049864	APOBEC_C	PF05240.14	4.5e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000057047	-	974	-	ENSSSCP00000049922	242 (aa)	-	A0A287B0J4
ENSSSCT00000036902	-	798	-	ENSSSCP00000038941	265 (aa)	-	B7T157
ENSSSCT00000048940	-	897	-	ENSSSCP00000038508	243 (aa)	-	A0A287A3I4
ENSSSCT00000000097	-	5922	-	ENSSSCP00000000095	418 (aa)	-	F1SNY0
ENSSSCT00000061182	-	1967	-	ENSSSCP00000049864	243 (aa)	-	A0A287A3I4
ENSSSCT00000050517	-	6241	-	ENSSSCP00000051647	454 (aa)	-	A0A287B586
ENSSSCT00000052388	-	1682	-	ENSSSCP00000050419	280 (aa)	-	D3U1S2
ENSSSCT00000053908	-	1406	-	ENSSSCP00000041829	234 (aa)	-	A0A287AD63

Gene Model

Click here to download ENSSSCG00000000091's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000000091's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000000091	APOBEC3B	87	42.045	ENSSSCG00000000667	AICDA	98	42.045

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000000091	APOBEC3B	83	50.556	ENSG00000100298	APOBEC3H	99	50.556	Homo_sapiens
ENSSSCG00000000091	APOBEC3B	91	45.853	ENSAMEG00000010818	-	98	45.853	Ailuropoda_melanoleuca
ENSSSCG00000000091	APOBEC3B	86	48.792	ENSANAG00000025410	APOBEC3H	93	49.048	Aotus_nancymaae
ENSSSCG00000000091	APOBEC3B	91	68.333	ENSBTAG00000007755	APOBEC3H	96	68.333	Bos_taurus
ENSSSCG00000000091	APOBEC3B	85	45.918	ENSCJAG00000012524	APOBEC3H	98	47.857	Callithrix_jacchus
ENSSSCG00000000091	APOBEC3B	89	58.763	ENSCAFG00000001361	APOBEC3Z3	100	58.763	Canis_familiaris
ENSSSCG00000000091	APOBEC3B	84	59.659	ENSCAFG00020002584	-	96	59.659	Canis_lupus_dingo
ENSSSCG00000000091	APOBEC3B	91	70.000	ENSCHIG00000026580	-	98	69.730	Capra_hircus
ENSSSCG00000000091	APOBEC3B	79	53.448	ENSTSYG00000032894	-	100	53.448	Carlito_syrichta
ENSSSCG00000000091	APOBEC3B	90	48.285	ENSCPOG00000009257	-	91	52.850	Cavia_porcellus
ENSSSCG00000000091	APOBEC3B	85	46.535	ENSCCAG00000008525	APOBEC3H	98	48.252	Cebus_capucinus
ENSSSCG00000000091	APOBEC3B	83	52.778	ENSCATG00000030302	APOBEC3H	99	52.778	Cercocebus_atys
ENSSSCG00000000091	APOBEC3B	89	50.254	ENSCLAG00000016615	-	96	50.259	Chinchilla_lanigera
ENSSSCG00000000091	APOBEC3B	92	52.607	ENSCSAG00000006371	APOBEC3H	94	54.348	Chlorocebus_sabaeus
ENSSSCG00000000091	APOBEC3B	98	45.368	ENSCGRG00001022976	Apobec3	99	47.761	Cricetulus_griseus_chok1gshd
ENSSSCG00000000091	APOBEC3B	98	45.368	ENSCGRG00000005621	Apobec3	99	47.761	Cricetulus_griseus_crigri
ENSSSCG00000000091	APOBEC3B	93	45.918	ENSDORG00000027271	-	100	50.000	Dipodomys_ordii
ENSSSCG00000000091	APOBEC3B	97	57.789	ENSECAG00000007726	APOBEC3H	98	57.576	Equus_caballus
ENSSSCG00000000091	APOBEC3B	99	53.689	ENSFCAG00000005251	APOBEC3Z3	99	57.732	Felis_catus
ENSSSCG00000000091	APOBEC3B	84	51.955	ENSSTOG00000007125	-	87	51.955	Ictidomys_tridecemlineatus
ENSSSCG00000000091	APOBEC3B	91	46.821	ENSJJAG00000016840	-	89	46.821	Jaculus_jaculus
ENSSSCG00000000091	APOBEC3B	85	49.721	ENSLAFG00000027404	-	97	51.667	Loxodonta_africana
ENSSSCG00000000091	APOBEC3B	92	51.659	ENSMFAG00000031827	APOBEC3H	97	52.857	Macaca_fascicularis
ENSSSCG00000000091	APOBEC3B	92	51.659	ENSMMUG00000001016	APOBEC3H	97	53.571	Macaca_mulatta
ENSSSCG00000000091	APOBEC3B	92	51.659	ENSMNEG00000039259	APOBEC3H	97	52.857	Macaca_nemestrina
ENSSSCG00000000091	APOBEC3B	92	51.185	ENSMLEG00000033417	APOBEC3H	97	52.143	Mandrillus_leucophaeus
ENSSSCG00000000091	APOBEC3B	98	45.498	ENSMAUG00000011683	Apobec3	98	46.667	Mesocricetus_auratus
ENSSSCG00000000091	APOBEC3B	96	44.444	ENSMOCG00000021576	Apobec3	99	43.066	Microtus_ochrogaster
ENSSSCG00000000091	APOBEC3B	98	41.905	MGP_CAROLIEiJ_G0020029	Apobec3	98	45.783	Mus_caroli
ENSSSCG00000000091	APOBEC3B	98	41.190	ENSMUSG00000009585	Apobec3	97	47.423	Mus_musculus
ENSSSCG00000000091	APOBEC3B	98	41.844	MGP_PahariEiJ_G0020031	-	99	41.805	Mus_pahari
ENSSSCG00000000091	APOBEC3B	98	41.190	MGP_SPRETEiJ_G0020927	Apobec3	98	46.988	Mus_spretus
ENSSSCG00000000091	APOBEC3B	91	53.627	ENSMPUG00000013239	-	99	53.627	Mustela_putorius_furo
ENSSSCG00000000091	APOBEC3B	99	44.138	ENSNGAG00000018998	Apobec3	97	53.535	Nannospalax_galili
ENSSSCG00000000091	APOBEC3B	92	52.133	ENSNLEG00000015218	-	94	52.717	Nomascus_leucogenys
ENSSSCG00000000091	APOBEC3B	96	42.250	ENSOCUG00000023913	-	100	42.250	Oryctolagus_cuniculus
ENSSSCG00000000091	APOBEC3B	77	70.950	ENSOARG00000016290	APOBEC3F	91	70.950	Ovis_aries
ENSSSCG00000000091	APOBEC3B	83	50.000	ENSPPAG00000036522	APOBEC3H	98	51.111	Pan_paniscus
ENSSSCG00000000091	APOBEC3B	80	58.462	ENSPPRG00000003941	-	99	58.462	Panthera_pardus
ENSSSCG00000000091	APOBEC3B	88	49.215	ENSPPRG00000003675	-	98	49.215	Panthera_pardus
ENSSSCG00000000091	APOBEC3B	80	58.974	ENSPTIG00000010283	-	99	58.974	Panthera_tigris_altaica
ENSSSCG00000000091	APOBEC3B	83	50.000	ENSPTRG00000014390	APOBEC3H	98	51.111	Pan_troglodytes
ENSSSCG00000000091	APOBEC3B	92	51.185	ENSPANG00000010774	APOBEC3H	97	52.143	Papio_anubis
ENSSSCG00000000091	APOBEC3B	97	43.429	ENSPEMG00000000456	Apobec3	99	42.534	Peromyscus_maniculatus_bairdii
ENSSSCG00000000091	APOBEC3B	89	50.251	ENSPPYG00000011834	-	94	52.222	Pongo_abelii
ENSSSCG00000000091	APOBEC3B	79	49.153	ENSPCAG00000015655	-	99	49.153	Procavia_capensis
ENSSSCG00000000091	APOBEC3B	62	56.693	ENSPVAG00000024161	-	100	56.693	Pteropus_vampyrus
ENSSSCG00000000091	APOBEC3B	61	56.800	ENSPVAG00000024267	-	100	56.800	Pteropus_vampyrus
ENSSSCG00000000091	APOBEC3B	84	57.627	ENSPVAG00000009462	-	100	57.627	Pteropus_vampyrus
ENSSSCG00000000091	APOBEC3B	93	42.040	ENSRNOG00000016852	Apobec3	98	42.040	Rattus_norvegicus
ENSSSCG00000000091	APOBEC3B	92	52.133	ENSRBIG00000029088	APOBEC3H	97	55.147	Rhinopithecus_bieti
ENSSSCG00000000091	APOBEC3B	92	52.607	ENSRROG00000024699	APOBEC3H	97	55.147	Rhinopithecus_roxellana
ENSSSCG00000000091	APOBEC3B	80	50.273	ENSSBOG00000030005	APOBEC3H	100	49.645	Saimiri_boliviensis_boliviensis
ENSSSCG00000000091	APOBEC3B	77	57.988	ENSTBEG00000001532	-	99	57.988	Tupaia_belangeri
ENSSSCG00000000091	APOBEC3B	79	75.141	ENSTTRG00000001266	-	99	75.141	Tursiops_truncatus
ENSSSCG00000000091	APOBEC3B	83	53.731	ENSUAMG00000004427	-	92	55.026	Ursus_americanus
ENSSSCG00000000091	APOBEC3B	84	57.216	ENSUMAG00000014435	-	99	57.216	Ursus_maritimus
ENSSSCG00000000091	APOBEC3B	60	70.079	ENSVPAG00000011108	-	99	70.079	Vicugna_pacos
ENSSSCG00000000091	APOBEC3B	75	71.795	ENSVVUG00000014624	-	59	73.171	Vulpes_vulpes