EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000000160 (Gene tree)
Gene ID: 100155716
Gene Symbol: PRDM4
Alias: PFM1
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 30589 bases
Position: chr5:12638291-12668879
Accession: 100155716
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000021425	zf-C2H2	PF00096.26	4.2e-20	1	2
ENSSSCP00000021425	zf-C2H2	PF00096.26	4.2e-20	2	2
ENSSSCP00000000167	zf-C2H2	PF00096.26	4.9e-19	1	2
ENSSSCP00000000167	zf-C2H2	PF00096.26	4.9e-19	2	2
ENSSSCP00000032731	zf-C2H2	PF00096.26	4.9e-19	1	2
ENSSSCP00000032731	zf-C2H2	PF00096.26	4.9e-19	2	2
ENSSSCP00000021425	zf-met	PF12874.7	1.8e-05	1	1
ENSSSCP00000000167	zf-met	PF12874.7	0.00014	1	1
ENSSSCP00000032731	zf-met	PF12874.7	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000027247	PRDM4-201	3083	-	ENSSSCP00000021425	751 (aa)	-	I3LBK4
ENSSSCT00000047006	PRDM4-203	4162	XM_013988215	ENSSSCP00000032731	801 (aa)	XP_013843669	F1SPR9
ENSSSCT00000000169	PRDM4-202	4124	XM_005655523	ENSSSCP00000000167	801 (aa)	XP_005655580	F1SPR9

Gene Model

Click here to download ENSSSCG00000000160's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000000160's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000000160	PRDM4	100	97.129	ENSG00000110851	PRDM4	100	98.667	Homo_sapiens
ENSSSCG00000000160	PRDM4	99	97.747	ENSAMEG00000016174	PRDM4	99	97.747	Ailuropoda_melanoleuca
ENSSSCG00000000160	PRDM4	99	87.845	ENSAPLG00000009846	PRDM4	99	87.343	Anas_platyrhynchos
ENSSSCG00000000160	PRDM4	100	97.004	ENSANAG00000024800	PRDM4	100	97.004	Aotus_nancymaae
ENSSSCG00000000160	PRDM4	100	98.377	ENSBTAG00000012999	PRDM4	100	98.377	Bos_taurus
ENSSSCG00000000160	PRDM4	100	96.504	ENSCJAG00000015261	PRDM4	100	96.504	Callithrix_jacchus
ENSSSCG00000000160	PRDM4	100	98.002	ENSCAFG00000001788	PRDM4	100	98.002	Canis_familiaris
ENSSSCG00000000160	PRDM4	100	98.002	ENSCAFG00020004916	PRDM4	100	98.002	Canis_lupus_dingo
ENSSSCG00000000160	PRDM4	100	98.002	ENSCHIG00000019409	PRDM4	100	98.002	Capra_hircus
ENSSSCG00000000160	PRDM4	100	97.253	ENSTSYG00000009248	PRDM4	100	97.253	Carlito_syrichta
ENSSSCG00000000160	PRDM4	99	90.738	ENSCAPG00000013937	PRDM4	99	90.738	Cavia_aperea
ENSSSCG00000000160	PRDM4	99	90.186	ENSCPOG00000022385	PRDM4	100	90.186	Cavia_porcellus
ENSSSCG00000000160	PRDM4	100	97.129	ENSCCAG00000036033	PRDM4	100	97.129	Cebus_capucinus
ENSSSCG00000000160	PRDM4	100	96.754	ENSCATG00000044797	PRDM4	100	96.754	Cercocebus_atys
ENSSSCG00000000160	PRDM4	99	92.662	ENSCLAG00000007545	PRDM4	100	92.910	Chinchilla_lanigera
ENSSSCG00000000160	PRDM4	100	97.004	ENSCSAG00000002896	PRDM4	100	97.004	Chlorocebus_sabaeus
ENSSSCG00000000160	PRDM4	77	97.273	ENSCHOG00000001744	PRDM4	86	97.273	Choloepus_hoffmanni
ENSSSCG00000000160	PRDM4	99	88.708	ENSCPBG00000023187	PRDM4	100	88.080	Chrysemys_picta_bellii
ENSSSCG00000000160	PRDM4	100	97.129	ENSCANG00000021804	PRDM4	100	97.129	Colobus_angolensis_palliatus
ENSSSCG00000000160	PRDM4	99	92.786	ENSCGRG00001015102	-	100	92.289	Cricetulus_griseus_chok1gshd
ENSSSCG00000000160	PRDM4	96	92.774	ENSCGRG00000004044	-	100	92.258	Cricetulus_griseus_crigri
ENSSSCG00000000160	PRDM4	100	96.130	ENSDNOG00000032478	PRDM4	100	96.418	Dasypus_novemcinctus
ENSSSCG00000000160	PRDM4	99	81.430	ENSDORG00000015081	-	100	81.556	Dipodomys_ordii
ENSSSCG00000000160	PRDM4	93	45.506	ENSEBUG00000003775	prdm4	99	45.568	Eptatretus_burgeri
ENSSSCG00000000160	PRDM4	100	98.002	ENSECAG00000015423	PRDM4	100	98.002	Equus_caballus
ENSSSCG00000000160	PRDM4	94	93.875	ENSEEUG00000006569	PRDM4	99	93.342	Erinaceus_europaeus
ENSSSCG00000000160	PRDM4	99	60.389	ENSELUG00000015265	prdm4	99	60.267	Esox_lucius
ENSSSCG00000000160	PRDM4	100	98.127	ENSFCAG00000022478	PRDM4	100	98.127	Felis_catus
ENSSSCG00000000160	PRDM4	99	88.080	ENSFALG00000013342	PRDM4	100	87.704	Ficedula_albicollis
ENSSSCG00000000160	PRDM4	100	87.173	ENSGALG00000012619	PRDM4	100	86.675	Gallus_gallus
ENSSSCG00000000160	PRDM4	99	88.346	ENSGAGG00000002763	PRDM4	95	87.719	Gopherus_agassizii
ENSSSCG00000000160	PRDM4	99	97.250	ENSGGOG00000001244	PRDM4	99	97.250	Gorilla_gorilla
ENSSSCG00000000160	PRDM4	99	94.228	ENSHGLG00000004590	PRDM4	98	94.103	Heterocephalus_glaber_female
ENSSSCG00000000160	PRDM4	99	93.168	ENSHGLG00100007464	PRDM4	100	93.043	Heterocephalus_glaber_male
ENSSSCG00000000160	PRDM4	99	58.974	ENSIPUG00000024162	prdm4	93	61.227	Ictalurus_punctatus
ENSSSCG00000000160	PRDM4	100	96.380	ENSSTOG00000016168	PRDM4	100	96.380	Ictidomys_tridecemlineatus
ENSSSCG00000000160	PRDM4	99	82.062	ENSJJAG00000022448	-	95	92.742	Jaculus_jaculus
ENSSSCG00000000160	PRDM4	99	72.649	ENSLACG00000007452	PRDM4	99	73.639	Latimeria_chalumnae
ENSSSCG00000000160	PRDM4	93	38.554	ENSLOCG00000017092	prdm4	100	53.680	Lepisosteus_oculatus
ENSSSCG00000000160	PRDM4	98	97.081	ENSLAFG00000001483	PRDM4	100	97.081	Loxodonta_africana
ENSSSCG00000000160	PRDM4	100	97.129	ENSMFAG00000041862	PRDM4	100	97.129	Macaca_fascicularis
ENSSSCG00000000160	PRDM4	100	97.129	ENSMMUG00000015550	PRDM4	100	97.129	Macaca_mulatta
ENSSSCG00000000160	PRDM4	100	96.879	ENSMNEG00000032319	PRDM4	100	96.879	Macaca_nemestrina
ENSSSCG00000000160	PRDM4	100	97.004	ENSMLEG00000039607	PRDM4	100	97.004	Mandrillus_leucophaeus
ENSSSCG00000000160	PRDM4	99	80.000	ENSMGAG00000012815	PRDM4	100	79.500	Meleagris_gallopavo
ENSSSCG00000000160	PRDM4	100	96.130	ENSMICG00000007807	PRDM4	100	96.130	Microcebus_murinus
ENSSSCG00000000160	PRDM4	99	93.734	ENSMOCG00000000753	Prdm4	99	93.233	Microtus_ochrogaster
ENSSSCG00000000160	PRDM4	99	94.605	ENSMUSG00000035529	Prdm4	100	94.354	Mus_musculus
ENSSSCG00000000160	PRDM4	99	93.852	MGP_PahariEiJ_G0031398	Prdm4	100	93.901	Mus_pahari
ENSSSCG00000000160	PRDM4	99	94.981	MGP_SPRETEiJ_G0016505	Prdm4	100	95.044	Mus_spretus
ENSSSCG00000000160	PRDM4	99	91.771	ENSMPUG00000012238	PRDM4	99	91.771	Mustela_putorius_furo
ENSSSCG00000000160	PRDM4	99	97.118	ENSMLUG00000000767	PRDM4	99	97.118	Myotis_lucifugus
ENSSSCG00000000160	PRDM4	99	95.483	ENSNGAG00000018627	Prdm4	100	95.483	Nannospalax_galili
ENSSSCG00000000160	PRDM4	100	97.004	ENSNLEG00000006748	PRDM4	100	97.004	Nomascus_leucogenys
ENSSSCG00000000160	PRDM4	89	89.437	ENSMEUG00000004495	PRDM4	89	89.437	Notamacropus_eugenii
ENSSSCG00000000160	PRDM4	94	96.726	ENSOPRG00000010192	PRDM4	89	96.726	Ochotona_princeps
ENSSSCG00000000160	PRDM4	99	90.375	ENSODEG00000014750	PRDM4	99	90.250	Octodon_degus
ENSSSCG00000000160	PRDM4	100	91.136	ENSOANG00000005526	PRDM4	100	91.136	Ornithorhynchus_anatinus
ENSSSCG00000000160	PRDM4	93	97.425	ENSOCUG00000012859	PRDM4	96	97.425	Oryctolagus_cuniculus
ENSSSCG00000000160	PRDM4	99	97.365	ENSOGAG00000011945	PRDM4	100	97.365	Otolemur_garnettii
ENSSSCG00000000160	PRDM4	100	97.628	ENSOARG00000017955	PRDM4	100	97.628	Ovis_aries
ENSSSCG00000000160	PRDM4	100	97.129	ENSPPAG00000038438	PRDM4	100	97.129	Pan_paniscus
ENSSSCG00000000160	PRDM4	100	98.127	ENSPPRG00000004144	PRDM4	100	98.127	Panthera_pardus
ENSSSCG00000000160	PRDM4	100	98.127	ENSPTIG00000005847	PRDM4	100	98.127	Panthera_tigris_altaica
ENSSSCG00000000160	PRDM4	100	97.129	ENSPTRG00000005400	PRDM4	100	97.129	Pan_troglodytes
ENSSSCG00000000160	PRDM4	100	97.129	ENSPANG00000022084	PRDM4	100	97.129	Papio_anubis
ENSSSCG00000000160	PRDM4	99	60.095	ENSPKIG00000000875	prdm4	99	60.214	Paramormyrops_kingsleyae
ENSSSCG00000000160	PRDM4	91	82.129	ENSPSIG00000012066	PRDM4	100	82.129	Pelodiscus_sinensis
ENSSSCG00000000160	PRDM4	99	95.232	ENSPEMG00000014598	Prdm4	100	95.232	Peromyscus_maniculatus_bairdii
ENSSSCG00000000160	PRDM4	100	88.682	ENSPCIG00000009471	PRDM4	100	88.682	Phascolarctos_cinereus
ENSSSCG00000000160	PRDM4	100	97.004	ENSPPYG00000004913	PRDM4	100	97.004	Pongo_abelii
ENSSSCG00000000160	PRDM4	83	97.917	ENSPCAG00000009987	PRDM4	83	97.917	Procavia_capensis
ENSSSCG00000000160	PRDM4	100	96.005	ENSPCOG00000021060	PRDM4	100	96.005	Propithecus_coquereli
ENSSSCG00000000160	PRDM4	100	97.007	ENSPVAG00000001596	PRDM4	100	97.007	Pteropus_vampyrus
ENSSSCG00000000160	PRDM4	99	94.110	ENSRNOG00000004962	Prdm4	100	93.734	Rattus_norvegicus
ENSSSCG00000000160	PRDM4	100	97.129	ENSRBIG00000035488	PRDM4	100	97.129	Rhinopithecus_bieti
ENSSSCG00000000160	PRDM4	100	97.253	ENSRROG00000012779	PRDM4	100	97.253	Rhinopithecus_roxellana
ENSSSCG00000000160	PRDM4	100	97.004	ENSSBOG00000000403	PRDM4	100	97.004	Saimiri_boliviensis_boliviensis
ENSSSCG00000000160	PRDM4	99	63.793	ENSSFOG00015023358	prdm4	99	63.670	Scleropages_formosus
ENSSSCG00000000160	PRDM4	99	88.221	ENSTGUG00000010962	-	99	87.845	Taeniopygia_guttata
ENSSSCG00000000160	PRDM4	67	98.707	ENSTBEG00000001732	PRDM4	84	89.932	Tupaia_belangeri
ENSSSCG00000000160	PRDM4	100	97.753	ENSTTRG00000011056	PRDM4	100	97.753	Tursiops_truncatus
ENSSSCG00000000160	PRDM4	100	97.878	ENSUAMG00000022796	PRDM4	100	97.878	Ursus_americanus
ENSSSCG00000000160	PRDM4	100	97.878	ENSUMAG00000017231	PRDM4	100	97.878	Ursus_maritimus
ENSSSCG00000000160	PRDM4	99	98.494	ENSVPAG00000002215	PRDM4	100	98.494	Vicugna_pacos
ENSSSCG00000000160	PRDM4	100	98.002	ENSVVUG00000023397	PRDM4	100	98.002	Vulpes_vulpes