EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000000633 (Gene tree)
Gene ID: 100518125
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 23421 bases
Position: chr5:61337862-61361282
Accession: 100518125
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000037189	CSD	PF00313.22	3.5e-26	1	1
ENSSSCP00000026338	CSD	PF00313.22	4e-26	1	1
ENSSSCP00000000665	CSD	PF00313.22	7.1e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000027246	YBX3-201	1923	XM_003126475	ENSSSCP00000026338	380 (aa)	XP_003126523	I3LQF8
ENSSSCT00000055431	YBX3-203	1642	-	ENSSSCP00000037189	361 (aa)	-	A0A286ZZW7
ENSSSCT00000000680	YBX3-202	1744	XM_003355575	ENSSSCP00000000665	312 (aa)	XP_003355623	F1SQ46

Gene Model

Click here to download ENSSSCG00000000633's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000000633's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000000633	YBX3	66	44.569	ENSSSCG00000028485	-	89	50.787
ENSSSCG00000000633	YBX3	63	55.897	ENSSSCG00000040331	-	52	80.000
ENSSSCG00000000633	YBX3	80	38.361	ENSSSCG00000040884	-	91	38.750
ENSSSCG00000000633	YBX3	63	56.061	ENSSSCG00000036316	-	52	80.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000000633	YBX3	100	89.764	ENSG00000060138	YBX3	91	97.619	Homo_sapiens
ENSSSCG00000000633	YBX3	94	90.808	ENSAMEG00000009393	YBX3	100	90.808	Ailuropoda_melanoleuca
ENSSSCG00000000633	YBX3	75	67.483	ENSAPLG00000003147	YBX3	70	100.000	Anas_platyrhynchos
ENSSSCG00000000633	YBX3	89	91.716	ENSANAG00000024492	-	92	94.483	Aotus_nancymaae
ENSSSCG00000000633	YBX3	100	65.409	ENSANAG00000033366	-	69	84.746	Aotus_nancymaae
ENSSSCG00000000633	YBX3	100	87.113	ENSBTAG00000009663	YBX3	88	84.751	Bos_taurus
ENSSSCG00000000633	YBX3	94	69.625	ENSCJAG00000033824	-	85	87.838	Callithrix_jacchus
ENSSSCG00000000633	YBX3	100	89.501	ENSCJAG00000021660	-	100	87.500	Callithrix_jacchus
ENSSSCG00000000633	YBX3	76	95.819	ENSCAFG00000013401	YBX3	100	97.248	Canis_familiaris
ENSSSCG00000000633	YBX3	100	89.211	ENSCAFG00020006412	YBX3	100	85.789	Canis_lupus_dingo
ENSSSCG00000000633	YBX3	100	87.113	ENSCHIG00000010863	YBX3	93	87.390	Capra_hircus
ENSSSCG00000000633	YBX3	100	74.038	ENSTSYG00000035821	-	89	75.824	Carlito_syrichta
ENSSSCG00000000633	YBX3	75	96.167	ENSTSYG00000004204	-	88	96.167	Carlito_syrichta
ENSSSCG00000000633	YBX3	75	88.502	ENSCAPG00000015039	YBX3	93	88.502	Cavia_aperea
ENSSSCG00000000633	YBX3	77	89.420	ENSCPOG00000011329	YBX3	85	89.310	Cavia_porcellus
ENSSSCG00000000633	YBX3	100	90.064	ENSCCAG00000016469	YBX3	100	88.189	Cebus_capucinus
ENSSSCG00000000633	YBX3	100	90.026	ENSCATG00000034411	YBX3	100	88.189	Cercocebus_atys
ENSSSCG00000000633	YBX3	75	89.199	ENSCLAG00000016030	YBX3	94	89.199	Chinchilla_lanigera
ENSSSCG00000000633	YBX3	100	89.764	ENSCSAG00000008744	YBX3	100	88.189	Chlorocebus_sabaeus
ENSSSCG00000000633	YBX3	94	78.571	ENSCHOG00000011988	YBX3	54	88.889	Choloepus_hoffmanni
ENSSSCG00000000633	YBX3	76	80.345	ENSCPBG00000014147	YBX3	81	79.655	Chrysemys_picta_bellii
ENSSSCG00000000633	YBX3	76	95.255	ENSCANG00000036801	YBX3	92	94.138	Colobus_angolensis_palliatus
ENSSSCG00000000633	YBX3	84	90.938	ENSCGRG00001016148	Ybx3	91	85.673	Cricetulus_griseus_chok1gshd
ENSSSCG00000000633	YBX3	75	92.123	ENSCGRG00000004563	Ybx3	98	90.753	Cricetulus_griseus_crigri
ENSSSCG00000000633	YBX3	89	81.844	ENSDORG00000009103	Ybx3	81	92.334	Dipodomys_ordii
ENSSSCG00000000633	YBX3	74	85.315	ENSETEG00000002557	YBX3	99	84.155	Echinops_telfairi
ENSSSCG00000000633	YBX3	100	87.895	ENSEASG00005014726	YBX3	100	78.526	Equus_asinus_asinus
ENSSSCG00000000633	YBX3	100	91.842	ENSECAG00000013777	YBX3	100	91.842	Equus_caballus
ENSSSCG00000000633	YBX3	74	93.662	ENSEEUG00000010415	YBX3	100	93.662	Erinaceus_europaeus
ENSSSCG00000000633	YBX3	100	95.000	ENSFCAG00000027748	YBX3	100	95.000	Felis_catus
ENSSSCG00000000633	YBX3	69	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
ENSSSCG00000000633	YBX3	75	86.411	ENSFDAG00000021192	YBX3	92	85.366	Fukomys_damarensis
ENSSSCG00000000633	YBX3	100	70.192	ENSGALG00000031890	YBX3	75	76.471	Gallus_gallus
ENSSSCG00000000633	YBX3	83	72.727	ENSGAGG00000017780	YBX3	76	84.163	Gopherus_agassizii
ENSSSCG00000000633	YBX3	100	90.026	ENSGGOG00000001352	YBX3	100	88.451	Gorilla_gorilla
ENSSSCG00000000633	YBX3	76	81.455	ENSHGLG00000015495	-	79	78.519	Heterocephalus_glaber_female
ENSSSCG00000000633	YBX3	79	77.199	ENSHGLG00000014798	-	85	79.252	Heterocephalus_glaber_female
ENSSSCG00000000633	YBX3	70	90.367	ENSHGLG00100003589	YBX3	87	90.367	Heterocephalus_glaber_male
ENSSSCG00000000633	YBX3	75	88.153	ENSSTOG00000002108	-	88	84.192	Ictidomys_tridecemlineatus
ENSSSCG00000000633	YBX3	91	86.207	ENSSTOG00000032577	-	94	83.918	Ictidomys_tridecemlineatus
ENSSSCG00000000633	YBX3	77	70.370	ENSJJAG00000014239	Ybx3	93	85.542	Jaculus_jaculus
ENSSSCG00000000633	YBX3	99	91.136	ENSLAFG00000017247	YBX3	92	89.474	Loxodonta_africana
ENSSSCG00000000633	YBX3	100	89.501	ENSMFAG00000039369	YBX3	100	87.664	Macaca_fascicularis
ENSSSCG00000000633	YBX3	86	91.131	ENSMMUG00000022469	YBX3	99	89.164	Macaca_mulatta
ENSSSCG00000000633	YBX3	100	89.239	ENSMNEG00000045109	YBX3	100	87.402	Macaca_nemestrina
ENSSSCG00000000633	YBX3	75	94.077	ENSMLEG00000033618	YBX3	79	94.077	Mandrillus_leucophaeus
ENSSSCG00000000633	YBX3	68	98.095	ENSMGAG00000014224	YBX3	100	81.106	Meleagris_gallopavo
ENSSSCG00000000633	YBX3	91	86.494	ENSMAUG00000012185	Ybx3	98	86.728	Mesocricetus_auratus
ENSSSCG00000000633	YBX3	100	73.397	ENSMICG00000031459	-	86	80.000	Microcebus_murinus
ENSSSCG00000000633	YBX3	100	90.026	ENSMICG00000038002	-	95	87.535	Microcebus_murinus
ENSSSCG00000000633	YBX3	82	92.332	ENSMOCG00000016291	Ybx3	94	92.414	Microtus_ochrogaster
ENSSSCG00000000633	YBX3	74	85.130	ENSMODG00000018248	YBX3	91	83.681	Monodelphis_domestica
ENSSSCG00000000633	YBX3	84	90.625	MGP_CAROLIEiJ_G0028947	Ybx3	91	85.965	Mus_caroli
ENSSSCG00000000633	YBX3	84	90.625	ENSMUSG00000030189	Ybx3	91	85.965	Mus_musculus
ENSSSCG00000000633	YBX3	84	90.625	MGP_PahariEiJ_G0022709	Ybx3	91	85.965	Mus_pahari
ENSSSCG00000000633	YBX3	84	90.938	MGP_SPRETEiJ_G0029994	Ybx3	91	86.257	Mus_spretus
ENSSSCG00000000633	YBX3	100	80.412	ENSMPUG00000011810	YBX3	100	76.804	Mustela_putorius_furo
ENSSSCG00000000633	YBX3	69	95.149	ENSMLUG00000007476	YBX3	100	95.149	Myotis_lucifugus
ENSSSCG00000000633	YBX3	77	85.859	ENSNGAG00000000710	Ybx3	88	85.185	Nannospalax_galili
ENSSSCG00000000633	YBX3	88	87.725	ENSNLEG00000034844	YBX3	91	86.068	Nomascus_leucogenys
ENSSSCG00000000633	YBX3	85	83.591	ENSODEG00000017957	YBX3	94	80.805	Octodon_degus
ENSSSCG00000000633	YBX3	77	88.475	ENSOCUG00000001889	YBX3	84	88.276	Oryctolagus_cuniculus
ENSSSCG00000000633	YBX3	100	87.887	ENSOGAG00000013245	YBX3	94	85.831	Otolemur_garnettii
ENSSSCG00000000633	YBX3	67	98.980	ENSOARG00000020919	YBX3	98	84.536	Ovis_aries
ENSSSCG00000000633	YBX3	100	83.465	ENSPPAG00000039068	YBX3	81	94.483	Pan_paniscus
ENSSSCG00000000633	YBX3	100	95.263	ENSPPRG00000005859	YBX3	100	95.263	Panthera_pardus
ENSSSCG00000000633	YBX3	75	97.552	ENSPTIG00000005322	YBX3	81	97.552	Panthera_tigris_altaica
ENSSSCG00000000633	YBX3	100	90.289	ENSPTRG00000004681	YBX3	100	88.714	Pan_troglodytes
ENSSSCG00000000633	YBX3	100	89.764	ENSPANG00000010280	YBX3	100	87.927	Papio_anubis
ENSSSCG00000000633	YBX3	56	99.038	ENSPSIG00000009247	YBX3	90	100.000	Pelodiscus_sinensis
ENSSSCG00000000633	YBX3	80	89.600	ENSPEMG00000010391	-	83	91.855	Peromyscus_maniculatus_bairdii
ENSSSCG00000000633	YBX3	86	90.798	ENSPEMG00000012132	-	99	87.037	Peromyscus_maniculatus_bairdii
ENSSSCG00000000633	YBX3	66	85.356	ENSPCIG00000029949	YBX3	100	80.695	Phascolarctos_cinereus
ENSSSCG00000000633	YBX3	100	89.501	ENSPPYG00000004279	YBX3	100	87.927	Pongo_abelii
ENSSSCG00000000633	YBX3	83	86.379	ENSPCAG00000001397	YBX3	98	84.122	Procavia_capensis
ENSSSCG00000000633	YBX3	74	85.874	ENSPCOG00000011663	YBX3	100	85.874	Propithecus_coquereli
ENSSSCG00000000633	YBX3	100	80.263	ENSPVAG00000006740	YBX3	77	88.814	Pteropus_vampyrus
ENSSSCG00000000633	YBX3	84	91.250	ENSRNOG00000005480	Ybx3	91	85.965	Rattus_norvegicus
ENSSSCG00000000633	YBX3	100	89.239	ENSRBIG00000039208	YBX3	100	87.664	Rhinopithecus_bieti
ENSSSCG00000000633	YBX3	100	89.239	ENSRROG00000029638	YBX3	100	87.664	Rhinopithecus_roxellana
ENSSSCG00000000633	YBX3	91	83.768	ENSSBOG00000030573	YBX3	85	93.080	Saimiri_boliviensis_boliviensis
ENSSSCG00000000633	YBX3	63	98.837	ENSSHAG00000003262	YBX3	98	81.100	Sarcophilus_harrisii
ENSSSCG00000000633	YBX3	51	68.421	ENSSPUG00000009911	-	64	88.971	Sphenodon_punctatus
ENSSSCG00000000633	YBX3	68	98.077	ENSTGUG00000012047	YBX3	74	98.077	Taeniopygia_guttata
ENSSSCG00000000633	YBX3	100	83.202	ENSTBEG00000012570	YBX3	80	95.848	Tupaia_belangeri
ENSSSCG00000000633	YBX3	69	87.970	ENSTTRG00000008045	YBX3	100	87.970	Tursiops_truncatus
ENSSSCG00000000633	YBX3	73	91.697	ENSUAMG00000016662	YBX3	100	92.058	Ursus_americanus
ENSSSCG00000000633	YBX3	75	96.853	ENSUMAG00000016118	YBX3	94	96.853	Ursus_maritimus
ENSSSCG00000000633	YBX3	56	100.000	ENSVPAG00000000876	YBX3	100	73.145	Vicugna_pacos
ENSSSCG00000000633	YBX3	73	93.502	ENSVVUG00000004956	YBX3	100	93.502	Vulpes_vulpes
ENSSSCG00000000633	YBX3	52	92.222	ENSXETG00000016239	ybx3	89	69.369	Xenopus_tropicalis