EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000000998 (Gene tree)
Gene ID: 110255215
Gene Symbol: RPP40
Alias: RNASEP1|bA428J1.3
Full Name: ribonuclease P/MRP subunit p40
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 16647 bases
Position: chr7:2988992-3005638
Accession: 110255215
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000001066	Ribonuc_P_40	PF08584.11	3.2e-93	1	1
ENSSSCP00000034038	Ribonuc_P_40	PF08584.11	4.7e-93	1	1
ENSSSCP00000045572	Ribonuc_P_40	PF08584.11	1.7e-72	1	2
ENSSSCP00000045572	Ribonuc_P_40	PF08584.11	1.7e-72	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000062482	RPP40-203	966	-	ENSSSCP00000045572	321 (aa)	-	A0A287ANU7
ENSSSCT00000045450	RPP40-201	5220	XM_003128155	ENSSSCP00000034038	363 (aa)	XP_003128203	A0A286ZR31
ENSSSCT00000001088	RPP40-202	4388	XM_005653448	ENSSSCP00000001066	303 (aa)	XP_005653505	F1RX08

Gene Model

Click here to download ENSSSCG00000000998's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03008	Ribosome biogenesis in eukaryotes	KEGG
ssc03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000000998's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000000998	RPP40	100	80.997	ENSG00000124787	RPP40	100	80.997	Homo_sapiens
ENSSSCG00000000998	RPP40	89	32.298	ENSAPOG00000008660	rpp40	92	32.298	Acanthochromis_polyacanthus
ENSSSCG00000000998	RPP40	100	86.777	ENSAMEG00000012938	RPP40	100	86.777	Ailuropoda_melanoleuca
ENSSSCG00000000998	RPP40	99	37.954	ENSACIG00000003617	rpp40	98	37.989	Amphilophus_citrinellus
ENSSSCG00000000998	RPP40	99	40.728	ENSAOCG00000011846	rpp40	99	39.496	Amphiprion_ocellaris
ENSSSCG00000000998	RPP40	99	40.728	ENSAPEG00000001322	rpp40	99	39.496	Amphiprion_percula
ENSSSCG00000000998	RPP40	99	38.816	ENSATEG00000006584	rpp40	99	38.781	Anabas_testudineus
ENSSSCG00000000998	RPP40	99	67.442	ENSAPLG00000005691	RPP40	99	67.442	Anas_platyrhynchos
ENSSSCG00000000998	RPP40	99	65.000	ENSACAG00000006550	RPP40	87	63.202	Anolis_carolinensis
ENSSSCG00000000998	RPP40	100	80.716	ENSANAG00000029246	RPP40	100	80.716	Aotus_nancymaae
ENSSSCG00000000998	RPP40	98	41.554	ENSACLG00000015883	rpp40	97	40.449	Astatotilapia_calliptera
ENSSSCG00000000998	RPP40	99	47.508	ENSAMXG00000001755	rpp40	99	47.619	Astyanax_mexicanus
ENSSSCG00000000998	RPP40	100	85.950	ENSBTAG00000003332	RPP40	100	85.950	Bos_taurus
ENSSSCG00000000998	RPP40	100	81.620	ENSCJAG00000021373	RPP40	100	81.620	Callithrix_jacchus
ENSSSCG00000000998	RPP40	100	85.675	ENSCAFG00000009435	RPP40	100	85.675	Canis_familiaris
ENSSSCG00000000998	RPP40	100	85.675	ENSCAFG00020013380	RPP40	100	85.675	Canis_lupus_dingo
ENSSSCG00000000998	RPP40	100	83.747	ENSCHIG00000016849	RPP40	100	83.747	Capra_hircus
ENSSSCG00000000998	RPP40	100	82.866	ENSTSYG00000032857	RPP40	100	82.866	Carlito_syrichta
ENSSSCG00000000998	RPP40	100	73.267	ENSCAPG00000004957	RPP40	98	73.394	Cavia_aperea
ENSSSCG00000000998	RPP40	100	80.716	ENSCPOG00000005855	RPP40	100	80.716	Cavia_porcellus
ENSSSCG00000000998	RPP40	100	82.555	ENSCCAG00000019809	RPP40	100	82.555	Cebus_capucinus
ENSSSCG00000000998	RPP40	100	80.374	ENSCATG00000038787	RPP40	100	80.374	Cercocebus_atys
ENSSSCG00000000998	RPP40	100	81.267	ENSCLAG00000003235	RPP40	100	81.267	Chinchilla_lanigera
ENSSSCG00000000998	RPP40	100	80.441	ENSCSAG00000007307	RPP40	100	80.441	Chlorocebus_sabaeus
ENSSSCG00000000998	RPP40	83	65.600	ENSCHOG00000005856	-	100	65.600	Choloepus_hoffmanni
ENSSSCG00000000998	RPP40	99	70.432	ENSCPBG00000009003	RPP40	99	69.167	Chrysemys_picta_bellii
ENSSSCG00000000998	RPP40	100	80.997	ENSCANG00000033965	RPP40	100	80.997	Colobus_angolensis_palliatus
ENSSSCG00000000998	RPP40	100	76.898	ENSCGRG00001018328	Rpp40	100	76.860	Cricetulus_griseus_chok1gshd
ENSSSCG00000000998	RPP40	100	76.898	ENSCGRG00000011344	Rpp40	100	76.860	Cricetulus_griseus_crigri
ENSSSCG00000000998	RPP40	99	38.284	ENSCSEG00000015006	-	98	37.640	Cynoglossus_semilaevis
ENSSSCG00000000998	RPP40	89	35.424	ENSCVAG00000012169	rpp40	100	35.424	Cyprinodon_variegatus
ENSSSCG00000000998	RPP40	99	49.861	ENSDARG00000017605	rpp40	99	49.861	Danio_rerio
ENSSSCG00000000998	RPP40	82	80.135	ENSDNOG00000048136	RPP40	99	80.135	Dasypus_novemcinctus
ENSSSCG00000000998	RPP40	100	78.512	ENSDORG00000029944	-	100	78.512	Dipodomys_ordii
ENSSSCG00000000998	RPP40	100	59.626	ENSDORG00000011196	-	100	59.626	Dipodomys_ordii
ENSSSCG00000000998	RPP40	92	77.528	ENSETEG00000007458	RPP40	100	63.912	Echinops_telfairi
ENSSSCG00000000998	RPP40	98	45.352	ENSEBUG00000000386	rpp40	99	45.352	Eptatretus_burgeri
ENSSSCG00000000998	RPP40	100	85.950	ENSEASG00005012116	RPP40	80	85.950	Equus_asinus_asinus
ENSSSCG00000000998	RPP40	100	86.226	ENSECAG00000017247	RPP40	80	86.226	Equus_caballus
ENSSSCG00000000998	RPP40	82	64.646	ENSEEUG00000012087	RPP40	100	64.646	Erinaceus_europaeus
ENSSSCG00000000998	RPP40	99	45.545	ENSELUG00000017004	rpp40	99	45.810	Esox_lucius
ENSSSCG00000000998	RPP40	100	85.047	ENSFCAG00000009249	RPP40	100	85.047	Felis_catus
ENSSSCG00000000998	RPP40	99	67.302	ENSFALG00000013166	RPP40	100	65.749	Ficedula_albicollis
ENSSSCG00000000998	RPP40	100	81.267	ENSFDAG00000013001	-	100	81.267	Fukomys_damarensis
ENSSSCG00000000998	RPP40	97	64.068	ENSFDAG00000000265	-	100	64.068	Fukomys_damarensis
ENSSSCG00000000998	RPP40	99	40.397	ENSFHEG00000021429	rpp40	88	40.896	Fundulus_heteroclitus
ENSSSCG00000000998	RPP40	97	39.322	ENSGMOG00000018653	rpp40	100	44.643	Gadus_morhua
ENSSSCG00000000998	RPP40	99	65.781	ENSGALG00000036074	RPP40	99	64.444	Gallus_gallus
ENSSSCG00000000998	RPP40	99	33.113	ENSGAFG00000004189	-	99	33.113	Gambusia_affinis
ENSSSCG00000000998	RPP40	98	41.611	ENSGACG00000002472	rpp40	99	41.176	Gasterosteus_aculeatus
ENSSSCG00000000998	RPP40	99	71.761	ENSGAGG00000012918	RPP40	99	70.278	Gopherus_agassizii
ENSSSCG00000000998	RPP40	100	80.997	ENSGGOG00000013764	RPP40	100	80.997	Gorilla_gorilla
ENSSSCG00000000998	RPP40	99	41.196	ENSHBUG00000009378	rpp40	93	40.367	Haplochromis_burtoni
ENSSSCG00000000998	RPP40	100	81.267	ENSHGLG00000004871	RPP40	100	81.267	Heterocephalus_glaber_female
ENSSSCG00000000998	RPP40	100	81.267	ENSHGLG00100002080	RPP40	100	81.267	Heterocephalus_glaber_male
ENSSSCG00000000998	RPP40	98	34.343	ENSHCOG00000013264	-	92	34.006	Hippocampus_comes
ENSSSCG00000000998	RPP40	99	47.176	ENSIPUG00000008951	RPP40	99	47.339	Ictalurus_punctatus
ENSSSCG00000000998	RPP40	100	80.716	ENSSTOG00000011199	RPP40	100	80.716	Ictidomys_tridecemlineatus
ENSSSCG00000000998	RPP40	100	77.686	ENSJJAG00000020629	Rpp40	100	77.686	Jaculus_jaculus
ENSSSCG00000000998	RPP40	99	37.748	ENSKMAG00000019358	rpp40	99	38.095	Kryptolebias_marmoratus
ENSSSCG00000000998	RPP40	99	40.397	ENSLBEG00000022724	rpp40	99	40.616	Labrus_bergylta
ENSSSCG00000000998	RPP40	99	58.611	ENSLACG00000014848	RPP40	99	58.611	Latimeria_chalumnae
ENSSSCG00000000998	RPP40	100	52.342	ENSLOCG00000011650	rpp40	100	52.342	Lepisosteus_oculatus
ENSSSCG00000000998	RPP40	100	80.528	ENSLAFG00000007530	RPP40	100	80.528	Loxodonta_africana
ENSSSCG00000000998	RPP40	100	80.685	ENSMFAG00000043100	RPP40	100	80.685	Macaca_fascicularis
ENSSSCG00000000998	RPP40	100	80.716	ENSMMUG00000004966	RPP40	100	80.716	Macaca_mulatta
ENSSSCG00000000998	RPP40	100	80.997	ENSMNEG00000041986	RPP40	100	80.997	Macaca_nemestrina
ENSSSCG00000000998	RPP40	98	71.148	ENSMLEG00000040851	RPP40	100	77.273	Mandrillus_leucophaeus
ENSSSCG00000000998	RPP40	99	40.066	ENSMAMG00000019551	rpp40	98	40.336	Mastacembelus_armatus
ENSSSCG00000000998	RPP40	99	42.193	ENSMZEG00005019475	rpp40	99	40.997	Maylandia_zebra
ENSSSCG00000000998	RPP40	99	67.110	ENSMGAG00000004009	RPP40	89	66.460	Meleagris_gallopavo
ENSSSCG00000000998	RPP40	100	80.992	ENSMAUG00000010268	Rpp40	100	80.992	Mesocricetus_auratus
ENSSSCG00000000998	RPP40	100	82.866	ENSMICG00000003297	RPP40	100	82.866	Microcebus_murinus
ENSSSCG00000000998	RPP40	100	79.890	ENSMOCG00000000305	Rpp40	100	79.890	Microtus_ochrogaster
ENSSSCG00000000998	RPP40	98	35.294	ENSMMOG00000020591	-	99	35.294	Mola_mola
ENSSSCG00000000998	RPP40	100	76.648	ENSMODG00000009826	RPP40	100	76.648	Monodelphis_domestica
ENSSSCG00000000998	RPP40	99	39.073	ENSMALG00000020133	rpp40	99	39.216	Monopterus_albus
ENSSSCG00000000998	RPP40	100	80.441	MGP_CAROLIEiJ_G0018429	Rpp40	100	80.441	Mus_caroli
ENSSSCG00000000998	RPP40	100	81.543	ENSMUSG00000021418	Rpp40	100	81.543	Mus_musculus
ENSSSCG00000000998	RPP40	100	80.992	MGP_PahariEiJ_G0019497	Rpp40	100	80.992	Mus_pahari
ENSSSCG00000000998	RPP40	100	80.992	MGP_SPRETEiJ_G0019309	Rpp40	100	80.992	Mus_spretus
ENSSSCG00000000998	RPP40	100	85.399	ENSMPUG00000000530	RPP40	93	85.399	Mustela_putorius_furo
ENSSSCG00000000998	RPP40	100	82.920	ENSMLUG00000000501	RPP40	100	82.920	Myotis_lucifugus
ENSSSCG00000000998	RPP40	95	72.832	ENSNGAG00000022529	-	100	72.832	Nannospalax_galili
ENSSSCG00000000998	RPP40	100	82.645	ENSNGAG00000023955	-	100	82.645	Nannospalax_galili
ENSSSCG00000000998	RPP40	99	38.361	ENSNBRG00000017465	rpp40	86	37.615	Neolamprologus_brichardi
ENSSSCG00000000998	RPP40	100	80.685	ENSNLEG00000034397	RPP40	100	80.685	Nomascus_leucogenys
ENSSSCG00000000998	RPP40	100	71.625	ENSMEUG00000005300	RPP40	100	71.625	Notamacropus_eugenii
ENSSSCG00000000998	RPP40	100	72.937	ENSODEG00000006170	-	100	73.913	Octodon_degus
ENSSSCG00000000998	RPP40	100	79.890	ENSODEG00000007255	-	100	79.890	Octodon_degus
ENSSSCG00000000998	RPP40	100	76.033	ENSODEG00000018153	-	100	76.033	Octodon_degus
ENSSSCG00000000998	RPP40	99	40.864	ENSONIG00000014016	rpp40	99	39.889	Oreochromis_niloticus
ENSSSCG00000000998	RPP40	99	70.432	ENSOANG00000001200	RPP40	99	70.432	Ornithorhynchus_anatinus
ENSSSCG00000000998	RPP40	99	71.906	ENSOCUG00000000354	RPP40	99	70.914	Oryctolagus_cuniculus
ENSSSCG00000000998	RPP40	99	38.079	ENSORLG00000008242	-	99	38.375	Oryzias_latipes
ENSSSCG00000000998	RPP40	99	38.079	ENSORLG00020013745	-	89	38.352	Oryzias_latipes_hni
ENSSSCG00000000998	RPP40	99	38.411	ENSORLG00015000887	-	99	38.655	Oryzias_latipes_hsok
ENSSSCG00000000998	RPP40	99	38.411	ENSOMEG00000002747	rpp40	99	38.655	Oryzias_melastigma
ENSSSCG00000000998	RPP40	100	83.196	ENSOGAG00000006055	RPP40	100	83.196	Otolemur_garnettii
ENSSSCG00000000998	RPP40	100	82.178	ENSOARG00000018783	RPP40	100	82.178	Ovis_aries
ENSSSCG00000000998	RPP40	100	80.997	ENSPPAG00000023703	RPP40	100	80.997	Pan_paniscus
ENSSSCG00000000998	RPP40	100	84.735	ENSPPRG00000005612	RPP40	100	84.735	Panthera_pardus
ENSSSCG00000000998	RPP40	100	77.961	ENSPTIG00000018847	RPP40	100	77.961	Panthera_tigris_altaica
ENSSSCG00000000998	RPP40	100	81.308	ENSPTRG00000017690	RPP40	100	81.308	Pan_troglodytes
ENSSSCG00000000998	RPP40	100	80.997	ENSPANG00000017865	RPP40	100	80.997	Papio_anubis
ENSSSCG00000000998	RPP40	99	49.304	ENSPKIG00000006311	rpp40	99	49.304	Paramormyrops_kingsleyae
ENSSSCG00000000998	RPP40	73	68.468	ENSPSIG00000007854	RPP40	100	68.468	Pelodiscus_sinensis
ENSSSCG00000000998	RPP40	97	75.768	ENSPEMG00000020809	Rpp40	91	71.217	Peromyscus_maniculatus_bairdii
ENSSSCG00000000998	RPP40	90	45.620	ENSPMAG00000008412	rpp40	99	45.985	Petromyzon_marinus
ENSSSCG00000000998	RPP40	100	78.237	ENSPCIG00000010682	RPP40	100	78.237	Phascolarctos_cinereus
ENSSSCG00000000998	RPP40	99	37.171	ENSPFOG00000011460	rpp40	98	37.047	Poecilia_formosa
ENSSSCG00000000998	RPP40	99	37.086	ENSPLAG00000001334	rpp40	99	37.255	Poecilia_latipinna
ENSSSCG00000000998	RPP40	99	37.086	ENSPMEG00000007721	rpp40	99	36.975	Poecilia_mexicana
ENSSSCG00000000998	RPP40	99	38.079	ENSPREG00000009215	rpp40	99	38.375	Poecilia_reticulata
ENSSSCG00000000998	RPP40	100	80.716	ENSPPYG00000016194	RPP40	100	80.716	Pongo_abelii
ENSSSCG00000000998	RPP40	51	82.065	ENSPCAG00000002700	-	99	82.065	Procavia_capensis
ENSSSCG00000000998	RPP40	100	83.801	ENSPCOG00000003907	RPP40	100	83.801	Propithecus_coquereli
ENSSSCG00000000998	RPP40	100	85.124	ENSPVAG00000011325	RPP40	100	85.124	Pteropus_vampyrus
ENSSSCG00000000998	RPP40	99	40.199	ENSPNYG00000004432	rpp40	99	40.199	Pundamilia_nyererei
ENSSSCG00000000998	RPP40	99	48.344	ENSPNAG00000019125	rpp40	99	47.207	Pygocentrus_nattereri
ENSSSCG00000000998	RPP40	100	80.165	ENSRNOG00000016226	Rpp40	100	80.165	Rattus_norvegicus
ENSSSCG00000000998	RPP40	100	81.308	ENSRBIG00000035800	RPP40	100	81.308	Rhinopithecus_bieti
ENSSSCG00000000998	RPP40	100	81.308	ENSRROG00000039116	RPP40	100	81.308	Rhinopithecus_roxellana
ENSSSCG00000000998	RPP40	100	81.308	ENSSBOG00000020297	RPP40	100	81.308	Saimiri_boliviensis_boliviensis
ENSSSCG00000000998	RPP40	92	74.820	ENSSHAG00000002102	RPP40	100	74.820	Sarcophilus_harrisii
ENSSSCG00000000998	RPP40	99	49.669	ENSSFOG00015001142	rpp40	81	48.760	Scleropages_formosus
ENSSSCG00000000998	RPP40	99	39.404	ENSSDUG00000007202	rpp40	99	39.496	Seriola_dumerili
ENSSSCG00000000998	RPP40	99	39.073	ENSSLDG00000017563	rpp40	99	39.216	Seriola_lalandi_dorsalis
ENSSSCG00000000998	RPP40	99	68.000	ENSSPUG00000017487	-	99	66.389	Sphenodon_punctatus
ENSSSCG00000000998	RPP40	97	65.085	ENSSPUG00000018950	-	100	65.085	Sphenodon_punctatus
ENSSSCG00000000998	RPP40	98	40.404	ENSSPAG00000022716	rpp40	99	39.496	Stegastes_partitus
ENSSSCG00000000998	RPP40	99	69.435	ENSTGUG00000002258	-	100	66.480	Taeniopygia_guttata
ENSSSCG00000000998	RPP40	58	68.927	ENSTGUG00000015246	-	100	68.927	Taeniopygia_guttata
ENSSSCG00000000998	RPP40	99	40.728	ENSTRUG00000003755	rpp40	98	40.793	Takifugu_rubripes
ENSSSCG00000000998	RPP40	99	39.167	ENSTNIG00000003077	rpp40	99	39.167	Tetraodon_nigroviridis
ENSSSCG00000000998	RPP40	83	56.000	ENSTBEG00000014467	-	73	56.000	Tupaia_belangeri
ENSSSCG00000000998	RPP40	99	80.110	ENSTTRG00000007319	RPP40	100	80.110	Tursiops_truncatus
ENSSSCG00000000998	RPP40	100	87.603	ENSUAMG00000002159	RPP40	100	87.603	Ursus_americanus
ENSSSCG00000000998	RPP40	100	87.603	ENSUMAG00000018639	RPP40	94	87.603	Ursus_maritimus
ENSSSCG00000000998	RPP40	78	64.979	ENSVPAG00000004652	-	99	62.116	Vicugna_pacos
ENSSSCG00000000998	RPP40	100	85.399	ENSVVUG00000005451	RPP40	100	85.399	Vulpes_vulpes
ENSSSCG00000000998	RPP40	98	54.362	ENSXETG00000017617	rpp40	99	52.778	Xenopus_tropicalis
ENSSSCG00000000998	RPP40	62	43.333	ENSXCOG00000019991	-	87	31.988	Xiphophorus_couchianus
ENSSSCG00000000998	RPP40	98	32.424	ENSXMAG00000024940	rpp40	98	32.424	Xiphophorus_maculatus