EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000001024 (Gene tree)
Gene ID: 100157926
Gene Symbol: RIOK1
Alias: AD034|FLJ30006|RRP10|bA288G3.1
Full Name: RIO kinase 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 31962 bases
Position: chr7:4750487-4782448
Accession: 100157926
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000001095	RIO1	PF01163.22	1.1e-74	1	1
ENSSSCP00000040815	RIO1	PF01163.22	1.3e-74	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000047114	RIOK1-202	8088	XM_021098127	ENSSSCP00000040815	565 (aa)	XP_020953786	A0A287A9Y2
ENSSSCT00000001117	RIOK1-201	2036	-	ENSSSCP00000001095	525 (aa)	-	F1RW76

Gene Model

Click here to download ENSSSCG00000001024's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000001024's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000001024	RIOK1	61	42.169	ENSSSCG00000029518	RIOK3	73	42.169

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000001024	RIOK1	100	84.859	ENSG00000124784	RIOK1	100	85.563	Homo_sapiens
ENSSSCG00000001024	RIOK1	57	64.506	ENSAPOG00000015632	riok1	99	64.506	Acanthochromis_polyacanthus
ENSSSCG00000001024	RIOK1	100	88.049	ENSAMEG00000017367	RIOK1	100	88.401	Ailuropoda_melanoleuca
ENSSSCG00000001024	RIOK1	88	69.138	ENSACIG00000003735	riok1	87	69.796	Amphilophus_citrinellus
ENSSSCG00000001024	RIOK1	99	65.832	ENSAOCG00000011818	riok1	100	65.653	Amphiprion_ocellaris
ENSSSCG00000001024	RIOK1	99	66.250	ENSAPEG00000001345	riok1	100	66.071	Amphiprion_percula
ENSSSCG00000001024	RIOK1	82	69.762	ENSATEG00000006594	riok1	99	69.762	Anabas_testudineus
ENSSSCG00000001024	RIOK1	84	79.079	ENSAPLG00000004196	RIOK1	99	79.916	Anas_platyrhynchos
ENSSSCG00000001024	RIOK1	100	73.415	ENSACAG00000000695	RIOK1	100	73.111	Anolis_carolinensis
ENSSSCG00000001024	RIOK1	100	75.132	ENSANAG00000023777	RIOK1	100	75.132	Aotus_nancymaae
ENSSSCG00000001024	RIOK1	99	64.643	ENSACLG00000015799	riok1	99	65.597	Astatotilapia_calliptera
ENSSSCG00000001024	RIOK1	99	65.744	ENSAMXG00000015286	riok1	99	65.338	Astyanax_mexicanus
ENSSSCG00000001024	RIOK1	100	86.268	ENSBTAG00000013821	RIOK1	100	86.972	Bos_taurus
ENSSSCG00000001024	RIOK1	82	46.855	WBGene00019698	riok-1	85	46.681	Caenorhabditis_elegans
ENSSSCG00000001024	RIOK1	100	85.009	ENSCJAG00000042960	RIOK1	100	85.009	Callithrix_jacchus
ENSSSCG00000001024	RIOK1	100	86.643	ENSCAFG00000009563	RIOK1	100	86.643	Canis_familiaris
ENSSSCG00000001024	RIOK1	95	85.502	ENSCAFG00020013233	RIOK1	98	84.307	Canis_lupus_dingo
ENSSSCG00000001024	RIOK1	100	86.268	ENSCHIG00000001534	RIOK1	100	86.620	Capra_hircus
ENSSSCG00000001024	RIOK1	67	84.085	ENSTSYG00000011368	RIOK1	100	86.850	Carlito_syrichta
ENSSSCG00000001024	RIOK1	80	84.889	ENSCAPG00000008489	RIOK1	100	85.129	Cavia_aperea
ENSSSCG00000001024	RIOK1	98	80.576	ENSCPOG00000009882	RIOK1	100	81.754	Cavia_porcellus
ENSSSCG00000001024	RIOK1	100	85.714	ENSCCAG00000024061	RIOK1	100	85.714	Cebus_capucinus
ENSSSCG00000001024	RIOK1	100	85.389	ENSCATG00000001548	RIOK1	100	85.389	Cercocebus_atys
ENSSSCG00000001024	RIOK1	100	84.359	ENSCLAG00000003522	RIOK1	100	84.710	Chinchilla_lanigera
ENSSSCG00000001024	RIOK1	94	82.863	ENSCSAG00000007396	RIOK1	98	82.863	Chlorocebus_sabaeus
ENSSSCG00000001024	RIOK1	85	74.843	ENSCHOG00000001873	RIOK1	85	75.786	Choloepus_hoffmanni
ENSSSCG00000001024	RIOK1	86	77.778	ENSCPBG00000008685	RIOK1	91	74.011	Chrysemys_picta_bellii
ENSSSCG00000001024	RIOK1	100	85.769	ENSCANG00000032919	RIOK1	100	85.769	Colobus_angolensis_palliatus
ENSSSCG00000001024	RIOK1	100	79.012	ENSCGRG00001018868	Riok1	100	78.483	Cricetulus_griseus_chok1gshd
ENSSSCG00000001024	RIOK1	100	79.012	ENSCGRG00000008015	Riok1	100	78.483	Cricetulus_griseus_crigri
ENSSSCG00000001024	RIOK1	88	50.000	ENSCSEG00000015014	riok1	86	50.652	Cynoglossus_semilaevis
ENSSSCG00000001024	RIOK1	58	63.303	ENSCVAG00000011291	riok1	99	63.303	Cyprinodon_variegatus
ENSSSCG00000001024	RIOK1	99	67.553	ENSDARG00000016399	riok1	100	68.617	Danio_rerio
ENSSSCG00000001024	RIOK1	100	82.373	ENSDNOG00000015813	RIOK1	100	83.072	Dasypus_novemcinctus
ENSSSCG00000001024	RIOK1	100	83.158	ENSDORG00000008530	Riok1	100	82.982	Dipodomys_ordii
ENSSSCG00000001024	RIOK1	78	53.111	FBgn0036187	RIOK1	82	52.024	Drosophila_melanogaster
ENSSSCG00000001024	RIOK1	100	80.600	ENSETEG00000020273	RIOK1	100	80.600	Echinops_telfairi
ENSSSCG00000001024	RIOK1	99	59.717	ENSEBUG00000013672	riok1	99	60.601	Eptatretus_burgeri
ENSSSCG00000001024	RIOK1	94	85.150	ENSEASG00005012032	RIOK1	94	85.150	Equus_asinus_asinus
ENSSSCG00000001024	RIOK1	100	85.915	ENSECAG00000009007	RIOK1	100	85.915	Equus_caballus
ENSSSCG00000001024	RIOK1	78	72.665	ENSEEUG00000007123	RIOK1	99	72.665	Erinaceus_europaeus
ENSSSCG00000001024	RIOK1	99	64.499	ENSELUG00000017029	riok1	100	66.197	Esox_lucius
ENSSSCG00000001024	RIOK1	100	85.289	ENSFCAG00000027290	RIOK1	100	85.114	Felis_catus
ENSSSCG00000001024	RIOK1	100	74.824	ENSFALG00000013244	RIOK1	100	75.528	Ficedula_albicollis
ENSSSCG00000001024	RIOK1	100	84.710	ENSFDAG00000019139	RIOK1	100	85.062	Fukomys_damarensis
ENSSSCG00000001024	RIOK1	80	67.333	ENSFHEG00000021419	riok1	83	75.066	Fundulus_heteroclitus
ENSSSCG00000001024	RIOK1	73	68.039	ENSGMOG00000018668	riok1	92	72.131	Gadus_morhua
ENSSSCG00000001024	RIOK1	58	72.727	ENSGALG00000012795	RIOK1	100	75.191	Gallus_gallus
ENSSSCG00000001024	RIOK1	83	65.068	ENSGAFG00000004091	riok1	79	66.210	Gambusia_affinis
ENSSSCG00000001024	RIOK1	97	63.289	ENSGACG00000002496	riok1	94	70.122	Gasterosteus_aculeatus
ENSSSCG00000001024	RIOK1	82	76.458	ENSGAGG00000002262	RIOK1	98	76.242	Gopherus_agassizii
ENSSSCG00000001024	RIOK1	100	81.629	ENSGGOG00000011037	RIOK1	100	86.104	Gorilla_gorilla
ENSSSCG00000001024	RIOK1	100	82.074	ENSHGLG00000008699	RIOK1	100	82.250	Heterocephalus_glaber_female
ENSSSCG00000001024	RIOK1	100	82.601	ENSHGLG00100008188	RIOK1	100	82.777	Heterocephalus_glaber_male
ENSSSCG00000001024	RIOK1	88	67.131	ENSHCOG00000013275	riok1	90	67.735	Hippocampus_comes
ENSSSCG00000001024	RIOK1	99	66.319	ENSIPUG00000003290	riok1	100	66.378	Ictalurus_punctatus
ENSSSCG00000001024	RIOK1	100	83.831	ENSSTOG00000009289	RIOK1	100	84.007	Ictidomys_tridecemlineatus
ENSSSCG00000001024	RIOK1	100	81.690	ENSJJAG00000015152	Riok1	100	82.570	Jaculus_jaculus
ENSSSCG00000001024	RIOK1	68	73.196	ENSKMAG00000019378	riok1	99	73.196	Kryptolebias_marmoratus
ENSSSCG00000001024	RIOK1	88	68.938	ENSLBEG00000016650	riok1	86	69.512	Labrus_bergylta
ENSSSCG00000001024	RIOK1	100	64.336	ENSLACG00000000300	RIOK1	100	65.385	Latimeria_chalumnae
ENSSSCG00000001024	RIOK1	99	67.972	ENSLOCG00000011728	riok1	99	69.751	Lepisosteus_oculatus
ENSSSCG00000001024	RIOK1	99	81.818	ENSLAFG00000005504	RIOK1	100	81.640	Loxodonta_africana
ENSSSCG00000001024	RIOK1	100	85.579	ENSMFAG00000029990	RIOK1	100	85.579	Macaca_fascicularis
ENSSSCG00000001024	RIOK1	100	85.389	ENSMMUG00000015577	RIOK1	100	85.389	Macaca_mulatta
ENSSSCG00000001024	RIOK1	100	81.973	ENSMNEG00000034396	RIOK1	99	84.233	Macaca_nemestrina
ENSSSCG00000001024	RIOK1	100	85.389	ENSMLEG00000026327	RIOK1	100	85.389	Mandrillus_leucophaeus
ENSSSCG00000001024	RIOK1	98	64.440	ENSMAMG00000019557	riok1	88	70.528	Mastacembelus_armatus
ENSSSCG00000001024	RIOK1	99	64.643	ENSMZEG00005019482	riok1	99	65.597	Maylandia_zebra
ENSSSCG00000001024	RIOK1	100	73.063	ENSMGAG00000003816	RIOK1	100	73.944	Meleagris_gallopavo
ENSSSCG00000001024	RIOK1	100	79.718	ENSMAUG00000012751	Riok1	100	79.012	Mesocricetus_auratus
ENSSSCG00000001024	RIOK1	100	84.859	ENSMICG00000044301	RIOK1	84	85.035	Microcebus_murinus
ENSSSCG00000001024	RIOK1	100	77.425	ENSMOCG00000017032	Riok1	100	77.249	Microtus_ochrogaster
ENSSSCG00000001024	RIOK1	84	60.630	ENSMMOG00000020598	riok1	87	61.024	Mola_mola
ENSSSCG00000001024	RIOK1	100	75.524	ENSMODG00000009964	RIOK1	100	75.524	Monodelphis_domestica
ENSSSCG00000001024	RIOK1	88	61.554	ENSMALG00000019982	riok1	89	63.312	Monopterus_albus
ENSSSCG00000001024	RIOK1	99	77.857	MGP_CAROLIEiJ_G0018439	Riok1	99	77.857	Mus_caroli
ENSSSCG00000001024	RIOK1	99	76.649	ENSMUSG00000021428	Riok1	99	76.649	Mus_musculus
ENSSSCG00000001024	RIOK1	99	76.964	MGP_PahariEiJ_G0019507	Riok1	99	77.143	Mus_pahari
ENSSSCG00000001024	RIOK1	99	77.500	MGP_SPRETEiJ_G0019319	Riok1	99	77.500	Mus_spretus
ENSSSCG00000001024	RIOK1	100	86.165	ENSMPUG00000000570	RIOK1	100	86.340	Mustela_putorius_furo
ENSSSCG00000001024	RIOK1	100	86.292	ENSMLUG00000015312	RIOK1	100	86.467	Myotis_lucifugus
ENSSSCG00000001024	RIOK1	100	83.774	ENSNGAG00000021734	Riok1	100	84.127	Nannospalax_galili
ENSSSCG00000001024	RIOK1	75	72.706	ENSNBRG00000017489	riok1	86	68.330	Neolamprologus_brichardi
ENSSSCG00000001024	RIOK1	100	74.472	ENSNLEG00000011621	RIOK1	100	75.528	Nomascus_leucogenys
ENSSSCG00000001024	RIOK1	79	61.039	ENSMEUG00000006679	-	83	52.211	Notamacropus_eugenii
ENSSSCG00000001024	RIOK1	65	82.432	ENSOPRG00000009524	RIOK1	99	82.432	Ochotona_princeps
ENSSSCG00000001024	RIOK1	76	72.500	ENSODEG00000005663	RIOK1	100	72.500	Octodon_degus
ENSSSCG00000001024	RIOK1	98	66.007	ENSONIG00000014010	riok1	98	66.306	Oreochromis_niloticus
ENSSSCG00000001024	RIOK1	82	83.190	ENSOANG00000012553	RIOK1	100	83.190	Ornithorhynchus_anatinus
ENSSSCG00000001024	RIOK1	100	82.074	ENSOCUG00000011824	RIOK1	100	82.074	Oryctolagus_cuniculus
ENSSSCG00000001024	RIOK1	98	66.187	ENSORLG00000008221	riok1	99	65.827	Oryzias_latipes
ENSSSCG00000001024	RIOK1	98	63.722	ENSORLG00020013838	riok1	70	65.094	Oryzias_latipes_hni
ENSSSCG00000001024	RIOK1	98	65.108	ENSORLG00015009817	riok1	98	66.547	Oryzias_latipes_hsok
ENSSSCG00000001024	RIOK1	98	64.758	ENSOMEG00000002758	riok1	88	66.367	Oryzias_melastigma
ENSSSCG00000001024	RIOK1	100	75.747	ENSOGAG00000010192	RIOK1	100	75.784	Otolemur_garnettii
ENSSSCG00000001024	RIOK1	100	87.148	ENSOARG00000017747	RIOK1	100	86.972	Ovis_aries
ENSSSCG00000001024	RIOK1	100	75.044	ENSPPAG00000016349	RIOK1	100	82.569	Pan_paniscus
ENSSSCG00000001024	RIOK1	100	85.114	ENSPPRG00000001932	RIOK1	100	85.289	Panthera_pardus
ENSSSCG00000001024	RIOK1	100	85.464	ENSPTIG00000018545	RIOK1	100	85.639	Panthera_tigris_altaica
ENSSSCG00000001024	RIOK1	100	84.683	ENSPTRG00000017700	RIOK1	100	85.387	Pan_troglodytes
ENSSSCG00000001024	RIOK1	100	85.579	ENSPANG00000016522	RIOK1	100	85.579	Papio_anubis
ENSSSCG00000001024	RIOK1	99	68.505	ENSPKIG00000006442	riok1	100	68.683	Paramormyrops_kingsleyae
ENSSSCG00000001024	RIOK1	100	75.972	ENSPSIG00000006488	RIOK1	99	75.923	Pelodiscus_sinensis
ENSSSCG00000001024	RIOK1	70	70.277	ENSPMGG00000017807	riok1	96	66.667	Periophthalmus_magnuspinnatus
ENSSSCG00000001024	RIOK1	100	79.189	ENSPEMG00000017844	Riok1	100	79.012	Peromyscus_maniculatus_bairdii
ENSSSCG00000001024	RIOK1	62	77.538	ENSPMAG00000006351	riok1	77	77.538	Petromyzon_marinus
ENSSSCG00000001024	RIOK1	94	73.881	ENSPCIG00000012653	RIOK1	94	74.254	Phascolarctos_cinereus
ENSSSCG00000001024	RIOK1	98	61.011	ENSPFOG00000011532	riok1	87	67.983	Poecilia_formosa
ENSSSCG00000001024	RIOK1	98	61.191	ENSPLAG00000001341	riok1	87	67.983	Poecilia_latipinna
ENSSSCG00000001024	RIOK1	98	61.011	ENSPMEG00000007710	riok1	89	67.983	Poecilia_mexicana
ENSSSCG00000001024	RIOK1	98	62.118	ENSPREG00000009237	riok1	99	61.871	Poecilia_reticulata
ENSSSCG00000001024	RIOK1	100	85.413	ENSPPYG00000016207	RIOK1	100	85.413	Pongo_abelii
ENSSSCG00000001024	RIOK1	100	71.605	ENSPCAG00000007892	RIOK1	100	69.665	Procavia_capensis
ENSSSCG00000001024	RIOK1	100	85.989	ENSPVAG00000014091	RIOK1	100	86.340	Pteropus_vampyrus
ENSSSCG00000001024	RIOK1	58	67.890	ENSPNYG00000004465	riok1	100	68.502	Pundamilia_nyererei
ENSSSCG00000001024	RIOK1	99	66.254	ENSPNAG00000015435	riok1	99	67.138	Pygocentrus_nattereri
ENSSSCG00000001024	RIOK1	99	78.214	ENSRNOG00000014049	Riok1	100	84.052	Rattus_norvegicus
ENSSSCG00000001024	RIOK1	100	85.009	ENSRBIG00000036685	RIOK1	100	85.009	Rhinopithecus_bieti
ENSSSCG00000001024	RIOK1	100	85.199	ENSRROG00000036611	RIOK1	100	85.199	Rhinopithecus_roxellana
ENSSSCG00000001024	RIOK1	62	42.817	YOR119C	RIO1	96	39.479	Saccharomyces_cerevisiae
ENSSSCG00000001024	RIOK1	100	85.876	ENSSBOG00000012588	RIOK1	100	85.876	Saimiri_boliviensis_boliviensis
ENSSSCG00000001024	RIOK1	85	77.366	ENSSHAG00000003091	RIOK1	93	77.366	Sarcophilus_harrisii
ENSSSCG00000001024	RIOK1	87	72.414	ENSSFOG00015001035	riok1	99	67.145	Scleropages_formosus
ENSSSCG00000001024	RIOK1	58	61.774	ENSSDUG00000007291	riok1	100	61.774	Seriola_dumerili
ENSSSCG00000001024	RIOK1	98	65.884	ENSSLDG00000017657	riok1	99	65.704	Seriola_lalandi_dorsalis
ENSSSCG00000001024	RIOK1	86	66.735	ENSSPUG00000007624	RIOK1	83	67.634	Sphenodon_punctatus
ENSSSCG00000001024	RIOK1	99	67.084	ENSSPAG00000022710	riok1	100	67.084	Stegastes_partitus
ENSSSCG00000001024	RIOK1	100	75.439	ENSTGUG00000002331	RIOK1	100	75.263	Taeniopygia_guttata
ENSSSCG00000001024	RIOK1	52	61.204	ENSTRUG00000001575	-	100	61.204	Takifugu_rubripes
ENSSSCG00000001024	RIOK1	80	57.675	ENSTRUG00000002854	riok1	94	63.472	Takifugu_rubripes
ENSSSCG00000001024	RIOK1	99	61.376	ENSTNIG00000003078	riok1	99	61.257	Tetraodon_nigroviridis
ENSSSCG00000001024	RIOK1	100	80.776	ENSTBEG00000016730	RIOK1	100	80.776	Tupaia_belangeri
ENSSSCG00000001024	RIOK1	74	96.429	ENSTTRG00000017335	RIOK1	87	96.429	Tursiops_truncatus
ENSSSCG00000001024	RIOK1	94	86.867	ENSUAMG00000003721	RIOK1	96	87.054	Ursus_americanus
ENSSSCG00000001024	RIOK1	100	87.522	ENSUMAG00000018461	RIOK1	100	87.873	Ursus_maritimus
ENSSSCG00000001024	RIOK1	75	85.567	ENSVPAG00000010813	-	73	84.880	Vicugna_pacos
ENSSSCG00000001024	RIOK1	100	86.292	ENSVVUG00000005018	RIOK1	100	86.292	Vulpes_vulpes
ENSSSCG00000001024	RIOK1	88	71.343	ENSXETG00000020436	riok1	86	72.634	Xenopus_tropicalis
ENSSSCG00000001024	RIOK1	81	67.765	ENSXCOG00000000245	riok1	99	68.213	Xiphophorus_couchianus
ENSSSCG00000001024	RIOK1	84	64.619	ENSXMAG00000014572	riok1	82	69.176	Xiphophorus_maculatus