EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSSSCG00000001384 (Gene tree)
Gene ID: 100144457
Gene Symbol: VARS2
Alias: DKFZP434L1435|G7a|KIAA1885|VARS2L|VARSL
Full Name: valyl-tRNA synthetase 2%2C mitochondrial
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 144725 bases
Position: chr7:23405023-23549747
Accession: 100144457
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000001464	tRNA-synt_1g	PF09334.11	2.9e-14	1	1
ENSSSCP00000030692	tRNA-synt_1g	PF09334.11	3.8e-14	1	1
ENSSSCP00000038977	tRNA-synt_1g	PF09334.11	5.2e-14	1	1
ENSSSCP00000001464	Anticodon_1	PF08264.13	3.2e-31	1	1
ENSSSCP00000030692	Anticodon_1	PF08264.13	3.4e-31	1	1
ENSSSCP00000038977	Anticodon_1	PF08264.13	3.9e-31	1	1
ENSSSCP00000001464	tRNA-synt_1	PF00133.22	1.4e-182	1	1
ENSSSCP00000030692	tRNA-synt_1	PF00133.22	1.8e-182	1	1
ENSSSCP00000038977	tRNA-synt_1	PF00133.22	2.3e-182	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000034465	VARS2-203	7937	XM_005665730	ENSSSCP00000030692	1062 (aa)	XP_005665787	K7GS12
ENSSSCT00000037825	VARS2-202	8046	-	ENSSSCP00000038977	1139 (aa)	-	A0A287A5A0
ENSSSCT00000001506	VARS2-201	2985	-	ENSSSCP00000001464	994 (aa)	-	F1RU69

Gene Model

Click here to download ENSSSCG00000001384's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000001384's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000001384	VARS2	92	54.772	ENSSSCG00000038950	VARS	81	51.351

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000001384	VARS2	92	54.835	ENSAPOG00000007396	vars2	97	51.236	Acanthochromis_polyacanthus
ENSSSCG00000001384	VARS2	100	87.571	ENSAMEG00000012997	VARS2	97	87.571	Ailuropoda_melanoleuca
ENSSSCG00000001384	VARS2	95	54.715	ENSACIG00000004344	vars2	95	52.647	Amphilophus_citrinellus
ENSSSCG00000001384	VARS2	90	55.495	ENSAOCG00000000476	vars2	98	50.185	Amphiprion_ocellaris
ENSSSCG00000001384	VARS2	92	54.352	ENSAPEG00000008646	vars2	95	50.092	Amphiprion_percula
ENSSSCG00000001384	VARS2	92	56.116	ENSATEG00000012291	vars2	96	52.748	Anabas_testudineus
ENSSSCG00000001384	VARS2	97	61.122	ENSACAG00000022093	VARS2	97	59.390	Anolis_carolinensis
ENSSSCG00000001384	VARS2	100	87.476	ENSANAG00000038018	VARS2	99	87.476	Aotus_nancymaae
ENSSSCG00000001384	VARS2	97	53.374	ENSACLG00000018673	vars2	97	51.643	Astatotilapia_calliptera
ENSSSCG00000001384	VARS2	94	56.448	ENSAMXG00000017773	vars2	93	55.959	Astyanax_mexicanus
ENSSSCG00000001384	VARS2	99	92.323	ENSBTAG00000010698	VARS2	99	92.075	Bos_taurus
ENSSSCG00000001384	VARS2	100	87.194	ENSCJAG00000019826	VARS2	99	87.194	Callithrix_jacchus
ENSSSCG00000001384	VARS2	100	86.817	ENSCAFG00000000454	VARS2	100	86.817	Canis_familiaris
ENSSSCG00000001384	VARS2	93	87.689	ENSCAFG00020019387	VARS2	95	87.729	Canis_lupus_dingo
ENSSSCG00000001384	VARS2	99	92.133	ENSCHIG00000007847	VARS2	99	92.170	Capra_hircus
ENSSSCG00000001384	VARS2	99	87.879	ENSTSYG00000009904	VARS2	99	87.830	Carlito_syrichta
ENSSSCG00000001384	VARS2	88	85.714	ENSCAPG00000017770	VARS2	99	85.622	Cavia_aperea
ENSSSCG00000001384	VARS2	99	85.196	ENSCPOG00000021834	VARS2	99	84.478	Cavia_porcellus
ENSSSCG00000001384	VARS2	100	87.571	ENSCCAG00000037907	VARS2	99	87.571	Cebus_capucinus
ENSSSCG00000001384	VARS2	99	89.596	ENSCATG00000032554	VARS2	99	89.245	Cercocebus_atys
ENSSSCG00000001384	VARS2	99	85.066	ENSCLAG00000002889	VARS2	99	84.463	Chinchilla_lanigera
ENSSSCG00000001384	VARS2	99	89.495	ENSCSAG00000008327	VARS2	99	89.057	Chlorocebus_sabaeus
ENSSSCG00000001384	VARS2	93	63.175	ENSCPBG00000021502	VARS2	97	61.948	Chrysemys_picta_bellii
ENSSSCG00000001384	VARS2	99	89.394	ENSCANG00000014991	VARS2	99	89.057	Colobus_angolensis_palliatus
ENSSSCG00000001384	VARS2	99	83.492	ENSCGRG00001021535	Vars2	100	83.333	Cricetulus_griseus_chok1gshd
ENSSSCG00000001384	VARS2	99	83.492	ENSCGRG00000014112	Vars2	100	83.333	Cricetulus_griseus_crigri
ENSSSCG00000001384	VARS2	82	58.741	ENSCSEG00000015432	vars2	90	58.741	Cynoglossus_semilaevis
ENSSSCG00000001384	VARS2	67	53.756	ENSCVAG00000017765	vars2	94	53.756	Cyprinodon_variegatus
ENSSSCG00000001384	VARS2	95	55.348	ENSDARG00000056717	vars2	97	52.586	Danio_rerio
ENSSSCG00000001384	VARS2	79	87.753	ENSDORG00000008516	Vars2	93	87.753	Dipodomys_ordii
ENSSSCG00000001384	VARS2	99	77.374	ENSETEG00000014844	VARS2	99	76.698	Echinops_telfairi
ENSSSCG00000001384	VARS2	99	91.111	ENSEASG00005019997	VARS2	97	91.046	Equus_asinus_asinus
ENSSSCG00000001384	VARS2	99	92.020	ENSECAG00000018202	VARS2	99	91.989	Equus_caballus
ENSSSCG00000001384	VARS2	67	81.553	ENSEEUG00000012591	-	67	81.553	Erinaceus_europaeus
ENSSSCG00000001384	VARS2	93	54.357	ENSELUG00000017824	vars2	97	51.538	Esox_lucius
ENSSSCG00000001384	VARS2	100	88.418	ENSFCAG00000010531	VARS2	100	88.418	Felis_catus
ENSSSCG00000001384	VARS2	99	84.864	ENSFDAG00000017216	VARS2	99	84.557	Fukomys_damarensis
ENSSSCG00000001384	VARS2	92	51.974	ENSFHEG00000013932	vars2	91	51.561	Fundulus_heteroclitus
ENSSSCG00000001384	VARS2	92	57.359	ENSGMOG00000018960	vars2	99	56.362	Gadus_morhua
ENSSSCG00000001384	VARS2	84	51.933	ENSGAFG00000004737	vars2	92	49.348	Gambusia_affinis
ENSSSCG00000001384	VARS2	90	57.511	ENSGACG00000001464	vars2	99	54.462	Gasterosteus_aculeatus
ENSSSCG00000001384	VARS2	91	64.317	ENSGAGG00000011652	VARS2	99	62.184	Gopherus_agassizii
ENSSSCG00000001384	VARS2	99	89.495	ENSGGOG00000014587	VARS2	99	88.962	Gorilla_gorilla
ENSSSCG00000001384	VARS2	92	52.348	ENSHBUG00000002448	vars2	94	52.348	Haplochromis_burtoni
ENSSSCG00000001384	VARS2	99	83.051	ENSHGLG00000012886	VARS2	96	83.051	Heterocephalus_glaber_female
ENSSSCG00000001384	VARS2	99	82.957	ENSHGLG00100016535	VARS2	99	82.957	Heterocephalus_glaber_male
ENSSSCG00000001384	VARS2	69	50.000	ENSHCOG00000017907	vars2	98	50.817	Hippocampus_comes
ENSSSCG00000001384	VARS2	92	57.128	ENSIPUG00000015573	Vars2	98	53.615	Ictalurus_punctatus
ENSSSCG00000001384	VARS2	99	88.283	ENSSTOG00000009924	VARS2	99	87.819	Ictidomys_tridecemlineatus
ENSSSCG00000001384	VARS2	99	84.343	ENSJJAG00000011144	Vars2	99	83.538	Jaculus_jaculus
ENSSSCG00000001384	VARS2	90	55.786	ENSKMAG00000001393	vars2	96	51.289	Kryptolebias_marmoratus
ENSSSCG00000001384	VARS2	93	54.681	ENSLBEG00000011949	vars2	96	51.573	Labrus_bergylta
ENSSSCG00000001384	VARS2	56	64.505	ENSLBEG00000005480	-	81	64.493	Labrus_bergylta
ENSSSCG00000001384	VARS2	95	54.309	ENSLACG00000001576	-	99	52.616	Latimeria_chalumnae
ENSSSCG00000001384	VARS2	99	87.879	ENSLAFG00000015183	VARS2	99	87.500	Loxodonta_africana
ENSSSCG00000001384	VARS2	99	89.192	ENSMFAG00000042367	VARS2	99	88.868	Macaca_fascicularis
ENSSSCG00000001384	VARS2	99	89.293	ENSMMUG00000018609	VARS2	99	88.962	Macaca_mulatta
ENSSSCG00000001384	VARS2	99	89.697	ENSMNEG00000043163	VARS2	99	89.340	Macaca_nemestrina
ENSSSCG00000001384	VARS2	99	89.697	ENSMLEG00000041728	VARS2	97	89.340	Mandrillus_leucophaeus
ENSSSCG00000001384	VARS2	95	53.285	ENSMAMG00000020339	vars2	98	50.936	Mastacembelus_armatus
ENSSSCG00000001384	VARS2	97	53.273	ENSMZEG00005017669	vars2	97	51.549	Maylandia_zebra
ENSSSCG00000001384	VARS2	100	83.255	ENSMAUG00000018946	Vars2	100	83.255	Mesocricetus_auratus
ENSSSCG00000001384	VARS2	90	88.453	ENSMICG00000005365	VARS2	100	88.453	Microcebus_murinus
ENSSSCG00000001384	VARS2	94	85.576	ENSMOCG00000014607	Vars2	100	85.576	Microtus_ochrogaster
ENSSSCG00000001384	VARS2	90	56.174	ENSMMOG00000012122	vars2	96	51.401	Mola_mola
ENSSSCG00000001384	VARS2	99	76.660	ENSMODG00000015848	VARS2	99	75.495	Monodelphis_domestica
ENSSSCG00000001384	VARS2	90	56.841	ENSMALG00000009217	vars2	98	53.094	Monopterus_albus
ENSSSCG00000001384	VARS2	100	84.087	MGP_CAROLIEiJ_G0021529	Vars2	100	84.087	Mus_caroli
ENSSSCG00000001384	VARS2	100	83.804	ENSMUSG00000038838	Vars2	100	83.804	Mus_musculus
ENSSSCG00000001384	VARS2	100	84.369	MGP_PahariEiJ_G0020523	Vars2	100	84.369	Mus_pahari
ENSSSCG00000001384	VARS2	100	83.898	MGP_SPRETEiJ_G0022436	Vars2	100	83.898	Mus_spretus
ENSSSCG00000001384	VARS2	100	88.041	ENSMPUG00000011643	VARS2	100	88.041	Mustela_putorius_furo
ENSSSCG00000001384	VARS2	99	88.473	ENSMLUG00000002356	VARS2	97	86.741	Myotis_lucifugus
ENSSSCG00000001384	VARS2	99	78.063	ENSNGAG00000020607	Vars2	100	77.664	Nannospalax_galili
ENSSSCG00000001384	VARS2	61	51.381	ENSNBRG00000001624	vars2	59	53.315	Neolamprologus_brichardi
ENSSSCG00000001384	VARS2	99	87.374	ENSNLEG00000005625	VARS2	96	87.003	Nomascus_leucogenys
ENSSSCG00000001384	VARS2	78	74.124	ENSMEUG00000014475	VARS2	90	74.124	Notamacropus_eugenii
ENSSSCG00000001384	VARS2	90	81.981	ENSOPRG00000000682	VARS2	90	82.104	Ochotona_princeps
ENSSSCG00000001384	VARS2	99	83.855	ENSODEG00000017965	VARS2	99	82.674	Octodon_degus
ENSSSCG00000001384	VARS2	93	38.900	ENSONIG00000004734	vars2	98	38.803	Oreochromis_niloticus
ENSSSCG00000001384	VARS2	75	88.235	ENSOANG00000000398	-	98	88.235	Ornithorhynchus_anatinus
ENSSSCG00000001384	VARS2	99	80.238	ENSOCUG00000021496	VARS2	64	80.561	Oryctolagus_cuniculus
ENSSSCG00000001384	VARS2	92	55.556	ENSORLG00000010632	vars2	94	52.008	Oryzias_latipes
ENSSSCG00000001384	VARS2	91	55.870	ENSORLG00020018584	vars2	96	51.721	Oryzias_latipes_hni
ENSSSCG00000001384	VARS2	91	55.761	ENSORLG00015010408	vars2	96	51.328	Oryzias_latipes_hsok
ENSSSCG00000001384	VARS2	92	55.260	ENSOMEG00000008360	vars2	95	52.459	Oryzias_melastigma
ENSSSCG00000001384	VARS2	99	87.500	ENSOGAG00000006087	VARS2	97	87.476	Otolemur_garnettii
ENSSSCG00000001384	VARS2	99	91.004	ENSOARG00000010844	VARS2	98	91.046	Ovis_aries
ENSSSCG00000001384	VARS2	99	89.596	ENSPPAG00000041141	VARS2	99	89.057	Pan_paniscus
ENSSSCG00000001384	VARS2	100	87.947	ENSPPRG00000006751	VARS2	97	87.947	Panthera_pardus
ENSSSCG00000001384	VARS2	100	87.853	ENSPTIG00000017799	VARS2	98	89.157	Panthera_tigris_altaica
ENSSSCG00000001384	VARS2	99	89.596	ENSPTRG00000034497	VARS2	99	89.057	Pan_troglodytes
ENSSSCG00000001384	VARS2	99	89.697	ENSPANG00000018481	VARS2	100	89.255	Papio_anubis
ENSSSCG00000001384	VARS2	95	56.723	ENSPKIG00000011372	vars2	97	54.354	Paramormyrops_kingsleyae
ENSSSCG00000001384	VARS2	63	67.670	ENSPSIG00000006206	VARS2	92	67.130	Pelodiscus_sinensis
ENSSSCG00000001384	VARS2	98	54.945	ENSPMGG00000000465	vars2	99	52.150	Periophthalmus_magnuspinnatus
ENSSSCG00000001384	VARS2	99	85.051	ENSPEMG00000014691	Vars2	99	84.216	Peromyscus_maniculatus_bairdii
ENSSSCG00000001384	VARS2	99	78.687	ENSPCIG00000015040	VARS2	99	77.788	Phascolarctos_cinereus
ENSSSCG00000001384	VARS2	93	55.216	ENSPFOG00000017616	vars2	95	52.626	Poecilia_formosa
ENSSSCG00000001384	VARS2	93	54.727	ENSPLAG00000019778	vars2	96	52.182	Poecilia_latipinna
ENSSSCG00000001384	VARS2	93	54.832	ENSPMEG00000011123	vars2	95	52.279	Poecilia_mexicana
ENSSSCG00000001384	VARS2	93	48.739	ENSPREG00000014998	vars2	94	47.505	Poecilia_reticulata
ENSSSCG00000001384	VARS2	99	89.495	ENSPPYG00000016424	VARS2	99	88.962	Pongo_abelii
ENSSSCG00000001384	VARS2	83	85.714	ENSPCAG00000006946	VARS2	84	82.137	Procavia_capensis
ENSSSCG00000001384	VARS2	99	87.525	ENSPCOG00000014839	VARS2	97	87.300	Propithecus_coquereli
ENSSSCG00000001384	VARS2	99	89.596	ENSPVAG00000004197	VARS2	99	88.878	Pteropus_vampyrus
ENSSSCG00000001384	VARS2	82	61.725	ENSPNYG00000010314	vars2	97	61.725	Pundamilia_nyererei
ENSSSCG00000001384	VARS2	92	57.524	ENSPNAG00000026793	vars2	96	53.905	Pygocentrus_nattereri
ENSSSCG00000001384	VARS2	100	83.710	ENSRNOG00000000833	Vars2	100	83.710	Rattus_norvegicus
ENSSSCG00000001384	VARS2	99	89.293	ENSRBIG00000032725	VARS2	99	88.962	Rhinopithecus_bieti
ENSSSCG00000001384	VARS2	99	89.293	ENSRROG00000043847	VARS2	99	88.962	Rhinopithecus_roxellana
ENSSSCG00000001384	VARS2	100	85.240	ENSSBOG00000033240	VARS2	97	85.240	Saimiri_boliviensis_boliviensis
ENSSSCG00000001384	VARS2	99	77.374	ENSSHAG00000009307	VARS2	100	75.992	Sarcophilus_harrisii
ENSSSCG00000001384	VARS2	96	54.872	ENSSFOG00015016187	vars2	98	52.345	Scleropages_formosus
ENSSSCG00000001384	VARS2	92	56.116	ENSSMAG00000020842	vars2	97	52.541	Scophthalmus_maximus
ENSSSCG00000001384	VARS2	90	56.813	ENSSDUG00000011598	vars2	97	52.000	Seriola_dumerili
ENSSSCG00000001384	VARS2	88	57.600	ENSSLDG00000015492	vars2	95	51.631	Seriola_lalandi_dorsalis
ENSSSCG00000001384	VARS2	57	89.051	ENSSARG00000003786	-	69	89.051	Sorex_araneus
ENSSSCG00000001384	VARS2	89	60.085	ENSSPUG00000014700	VARS2	94	60.085	Sphenodon_punctatus
ENSSSCG00000001384	VARS2	90	54.051	ENSSPAG00000004654	vars2	97	49.251	Stegastes_partitus
ENSSSCG00000001384	VARS2	93	55.378	ENSTRUG00000005264	vars2	97	52.708	Takifugu_rubripes
ENSSSCG00000001384	VARS2	96	55.337	ENSTNIG00000005916	vars2	99	52.328	Tetraodon_nigroviridis
ENSSSCG00000001384	VARS2	52	91.045	ENSTBEG00000007976	-	53	91.045	Tupaia_belangeri
ENSSSCG00000001384	VARS2	100	79.002	ENSTTRG00000012243	VARS2	99	79.002	Tursiops_truncatus
ENSSSCG00000001384	VARS2	99	88.698	ENSUAMG00000026124	VARS2	100	89.154	Ursus_americanus
ENSSSCG00000001384	VARS2	99	89.394	ENSUMAG00000019894	VARS2	100	88.230	Ursus_maritimus
ENSSSCG00000001384	VARS2	100	87.312	ENSVVUG00000010754	VARS2	95	87.312	Vulpes_vulpes
ENSSSCG00000001384	VARS2	92	56.082	ENSXETG00000003036	vars2	100	55.130	Xenopus_tropicalis
ENSSSCG00000001384	VARS2	93	55.176	ENSXCOG00000003455	vars2	96	53.175	Xiphophorus_couchianus
ENSSSCG00000001384	VARS2	94	54.375	ENSXMAG00000013523	vars2	97	51.420	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0002161	aminoacyl-tRNA editing activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005739	mitochondrion	-	IEA	Component
GO:0106074	aminoacyl-tRNA metabolism involved in translational fidelity	-	IEA	Process