EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSSSCG00000001400 (Gene tree)
Gene ID: 448813
Gene Symbol: DDX39B
Alias: BAT1|D6S81E|UAP56
Full Name: DExD-box helicase 39B
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 14556 bases
Position: chr7:23654600-23669155
Accession: 448813
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000046638	ResIII	PF04851.15	1.7e-07	1	1
ENSSSCP00000052489	ResIII	PF04851.15	1.7e-07	1	1
ENSSSCP00000054460	ResIII	PF04851.15	2.5e-07	1	1
ENSSSCP00000031843	ResIII	PF04851.15	2.9e-07	1	1
ENSSSCP00000031099	ResIII	PF04851.15	2.9e-07	1	1
ENSSSCP00000001487	ResIII	PF04851.15	3.2e-07	1	1
ENSSSCP00000046638	DEAD	PF00270.29	8.7e-39	1	1
ENSSSCP00000054460	DEAD	PF00270.29	1.3e-38	1	1
ENSSSCP00000031843	DEAD	PF00270.29	1.5e-38	1	1
ENSSSCP00000031099	DEAD	PF00270.29	1.6e-38	1	1
ENSSSCP00000001487	DEAD	PF00270.29	1.7e-38	1	1
ENSSSCP00000052489	DEAD	PF00270.29	5.4e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000041909	DDX39B-203	5041	XM_005665793	ENSSSCP00000046638	397 (aa)	XP_005665850	A0A287ARR0
ENSSSCT00000046178	DDX39B-201	5128	XM_005665792	ENSSSCP00000054460	471 (aa)	XP_005665849	A0A287BD57
ENSSSCT00000037952	DDX39B-202	5221	-	ENSSSCP00000031843	502 (aa)	-	A0A286ZJT1
ENSSSCT00000037196	DDX39B-204	5256	-	ENSSSCP00000052489	346 (aa)	-	A0A287B7P5
ENSSSCT00000001529	DDX39B-205	1581	-	ENSSSCP00000001487	526 (aa)	-	A0A2C9F348
ENSSSCT00000032673	DDX39B-206	1739	XM_021098341	ENSSSCP00000031099	508 (aa)	XP_020954000	K7GT57

Gene Model

Click here to download ENSSSCG00000001400's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03013	RNA transport	KEGG
ssc03015	mRNA surveillance pathway	KEGG
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000001400's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000001400	DDX39B	69	30.027	ENSSSCG00000024444	DDX59	60	30.027
ENSSSCG00000001400	DDX39B	99	34.694	ENSSSCG00000015097	DDX6	88	34.033
ENSSSCG00000001400	DDX39B	98	30.939	ENSSSCG00000026430	DDX3Y	68	30.709
ENSSSCG00000001400	DDX39B	97	32.164	ENSSSCG00000025329	DDX49	79	32.021
ENSSSCG00000001400	DDX39B	95	35.119	ENSSSCG00000006783	DDX20	53	33.258
ENSSSCG00000001400	DDX39B	93	30.267	ENSSSCG00000032642	DDX41	53	30.267
ENSSSCG00000001400	DDX39B	89	35.806	ENSSSCG00000033149	DDX47	78	35.311
ENSSSCG00000001400	DDX39B	96	37.008	ENSSSCG00000017957	EIF4A1	96	37.008
ENSSSCG00000001400	DDX39B	99	30.682	ENSSSCG00000015223	DDX25	99	30.481
ENSSSCG00000001400	DDX39B	96	37.538	ENSSSCG00000017155	EIF4A3	89	38.108
ENSSSCG00000001400	DDX39B	92	32.416	ENSSSCG00000022915	DDX27	50	33.516
ENSSSCG00000001400	DDX39B	98	30.518	ENSSSCG00000012252	DDX3X	61	30.025
ENSSSCG00000001400	DDX39B	83	30.029	ENSSSCG00000032092	DDX5	66	30.029
ENSSSCG00000001400	DDX39B	96	38.320	ENSSSCG00000011803	EIF4A2	93	37.647
ENSSSCG00000001400	DDX39B	97	33.913	ENSSSCG00000002722	-	82	33.083

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000001400	DDX39B	100	100.000	ENSG00000198563	DDX39B	100	100.000	Homo_sapiens
ENSSSCG00000001400	DDX39B	100	100.000	ENSAMEG00000009508	DDX39B	100	99.767	Ailuropoda_melanoleuca
ENSSSCG00000001400	DDX39B	99	96.774	ENSACIG00000004534	ddx39b	98	93.677	Amphilophus_citrinellus
ENSSSCG00000001400	DDX39B	100	95.954	ENSATEG00000012366	ddx39b	100	92.824	Anabas_testudineus
ENSSSCG00000001400	DDX39B	100	99.135	ENSACAG00000012240	DDX39B	100	97.203	Anolis_carolinensis
ENSSSCG00000001400	DDX39B	100	100.000	ENSANAG00000030372	DDX39B	100	100.000	Aotus_nancymaae
ENSSSCG00000001400	DDX39B	99	94.203	ENSACLG00000018759	ddx39b	99	90.783	Astatotilapia_calliptera
ENSSSCG00000001400	DDX39B	100	96.532	ENSAMXG00000017837	ddx39b	100	92.431	Astyanax_mexicanus
ENSSSCG00000001400	DDX39B	100	99.711	ENSBTAG00000014490	DDX39B	100	99.766	Bos_taurus
ENSSSCG00000001400	DDX39B	100	100.000	ENSCJAG00000003152	DDX39B	100	100.000	Callithrix_jacchus
ENSSSCG00000001400	DDX39B	100	100.000	ENSCAFG00000000509	DDX39B	100	100.000	Canis_familiaris
ENSSSCG00000001400	DDX39B	100	100.000	ENSCAFG00020020530	DDX39B	100	99.533	Canis_lupus_dingo
ENSSSCG00000001400	DDX39B	100	99.711	ENSCHIG00000004579	DDX39B	100	99.766	Capra_hircus
ENSSSCG00000001400	DDX39B	100	85.549	ENSTSYG00000029741	-	100	79.302	Carlito_syrichta
ENSSSCG00000001400	DDX39B	100	100.000	ENSTSYG00000010226	-	100	100.000	Carlito_syrichta
ENSSSCG00000001400	DDX39B	100	99.711	ENSCAPG00000010066	DDX39B	100	99.766	Cavia_aperea
ENSSSCG00000001400	DDX39B	100	99.711	ENSCPOG00000002335	DDX39B	100	99.766	Cavia_porcellus
ENSSSCG00000001400	DDX39B	100	100.000	ENSCCAG00000027897	DDX39B	100	100.000	Cebus_capucinus
ENSSSCG00000001400	DDX39B	98	89.706	ENSCATG00000043709	DDX39B	99	90.353	Cercocebus_atys
ENSSSCG00000001400	DDX39B	100	99.711	ENSCLAG00000014555	DDX39B	100	99.766	Chinchilla_lanigera
ENSSSCG00000001400	DDX39B	99	99.708	ENSCSAG00000008517	DDX39B	100	99.765	Chlorocebus_sabaeus
ENSSSCG00000001400	DDX39B	79	100.000	ENSCPBG00000014671	-	100	100.000	Chrysemys_picta_bellii
ENSSSCG00000001400	DDX39B	100	100.000	ENSCANG00000041217	DDX39B	100	100.000	Colobus_angolensis_palliatus
ENSSSCG00000001400	DDX39B	52	99.184	ENSCGRG00001017315	-	95	99.029	Cricetulus_griseus_chok1gshd
ENSSSCG00000001400	DDX39B	99	84.104	ENSCGRG00001021916	-	89	84.358	Cricetulus_griseus_chok1gshd
ENSSSCG00000001400	DDX39B	52	99.184	ENSCGRG00000012479	-	76	99.184	Cricetulus_griseus_crigri
ENSSSCG00000001400	DDX39B	100	96.532	ENSDARG00000036069	ddx39b	100	92.414	Danio_rerio
ENSSSCG00000001400	DDX39B	100	100.000	ENSDNOG00000010215	DDX39B	100	100.000	Dasypus_novemcinctus
ENSSSCG00000001400	DDX39B	84	100.000	ENSDORG00000004985	Ddx39b	100	99.733	Dipodomys_ordii
ENSSSCG00000001400	DDX39B	83	85.801	ENSETEG00000009649	DDX39B	87	86.898	Echinops_telfairi
ENSSSCG00000001400	DDX39B	100	100.000	ENSEASG00005017156	DDX39B	100	100.000	Equus_asinus_asinus
ENSSSCG00000001400	DDX39B	100	100.000	ENSECAG00000007750	DDX39B	100	100.000	Equus_caballus
ENSSSCG00000001400	DDX39B	100	95.954	ENSELUG00000017904	ddx39b	100	92.343	Esox_lucius
ENSSSCG00000001400	DDX39B	100	100.000	ENSFCAG00000004497	DDX39B	100	99.766	Felis_catus
ENSSSCG00000001400	DDX39B	100	99.711	ENSFDAG00000011074	DDX39B	100	99.766	Fukomys_damarensis
ENSSSCG00000001400	DDX39B	91	99.684	ENSGAGG00000001300	-	80	99.684	Gopherus_agassizii
ENSSSCG00000001400	DDX39B	100	100.000	ENSGGOG00000005989	DDX39B	100	100.000	Gorilla_gorilla
ENSSSCG00000001400	DDX39B	100	99.711	ENSHGLG00000019248	DDX39B	100	99.299	Heterocephalus_glaber_female
ENSSSCG00000001400	DDX39B	100	99.711	ENSHGLG00100011850	DDX39B	100	99.299	Heterocephalus_glaber_male
ENSSSCG00000001400	DDX39B	100	95.954	ENSIPUG00000015733	DDX39B	94	91.533	Ictalurus_punctatus
ENSSSCG00000001400	DDX39B	100	99.422	ENSSTOG00000012838	DDX39B	100	99.533	Ictidomys_tridecemlineatus
ENSSSCG00000001400	DDX39B	100	99.422	ENSJJAG00000005660	-	100	99.299	Jaculus_jaculus
ENSSSCG00000001400	DDX39B	69	79.487	ENSLBEG00000017177	-	85	75.102	Labrus_bergylta
ENSSSCG00000001400	DDX39B	99	81.232	ENSLBEG00000012254	ddx39b	99	78.220	Labrus_bergylta
ENSSSCG00000001400	DDX39B	100	92.000	ENSLACG00000002110	DDX39B	100	89.862	Latimeria_chalumnae
ENSSSCG00000001400	DDX39B	100	99.711	ENSLAFG00000014202	DDX39B	100	99.766	Loxodonta_africana
ENSSSCG00000001400	DDX39B	100	100.000	ENSMFAG00000034233	DDX39B	100	100.000	Macaca_fascicularis
ENSSSCG00000001400	DDX39B	100	100.000	ENSMMUG00000008839	DDX39B	100	100.000	Macaca_mulatta
ENSSSCG00000001400	DDX39B	100	100.000	ENSMNEG00000041059	DDX39B	100	100.000	Macaca_nemestrina
ENSSSCG00000001400	DDX39B	100	100.000	ENSMLEG00000043791	DDX39B	100	100.000	Mandrillus_leucophaeus
ENSSSCG00000001400	DDX39B	99	94.203	ENSMZEG00005017654	ddx39b	99	90.783	Maylandia_zebra
ENSSSCG00000001400	DDX39B	100	99.422	ENSMAUG00000008059	Ddx39b	100	99.299	Mesocricetus_auratus
ENSSSCG00000001400	DDX39B	100	100.000	ENSMICG00000017349	DDX39B	100	100.000	Microcebus_murinus
ENSSSCG00000001400	DDX39B	100	99.711	ENSMOCG00000011169	Ddx39b	100	99.533	Microtus_ochrogaster
ENSSSCG00000001400	DDX39B	85	99.660	ENSMODG00000015791	DDX39B	88	99.734	Monodelphis_domestica
ENSSSCG00000001400	DDX39B	100	100.000	ENSMUSG00000019432	Ddx39b	100	100.000	Mus_musculus
ENSSSCG00000001400	DDX39B	100	100.000	MGP_PahariEiJ_G0020513	Ddx39b	100	100.000	Mus_pahari
ENSSSCG00000001400	DDX39B	100	100.000	MGP_SPRETEiJ_G0022424	Ddx39b	100	99.533	Mus_spretus
ENSSSCG00000001400	DDX39B	100	100.000	ENSMPUG00000011407	DDX39B	100	99.766	Mustela_putorius_furo
ENSSSCG00000001400	DDX39B	90	100.000	ENSMLUG00000001681	DDX39B	100	100.000	Myotis_lucifugus
ENSSSCG00000001400	DDX39B	100	100.000	ENSNGAG00000022948	Ddx39b	100	100.000	Nannospalax_galili
ENSSSCG00000001400	DDX39B	82	99.649	ENSNLEG00000006094	DDX39B	81	99.649	Nomascus_leucogenys
ENSSSCG00000001400	DDX39B	82	100.000	ENSMEUG00000008264	DDX39B	86	100.000	Notamacropus_eugenii
ENSSSCG00000001400	DDX39B	100	100.000	ENSOPRG00000011923	DDX39B	100	99.766	Ochotona_princeps
ENSSSCG00000001400	DDX39B	100	99.711	ENSODEG00000018083	DDX39B	100	99.533	Octodon_degus
ENSSSCG00000001400	DDX39B	100	94.509	ENSONIG00000004740	ddx39b	100	91.898	Oreochromis_niloticus
ENSSSCG00000001400	DDX39B	50	99.156	ENSOANG00000008361	DDX39B	95	99.156	Ornithorhynchus_anatinus
ENSSSCG00000001400	DDX39B	100	95.568	ENSOCUG00000024126	DDX39B	100	96.163	Oryctolagus_cuniculus
ENSSSCG00000001400	DDX39B	100	98.847	ENSOGAG00000028850	-	100	98.601	Otolemur_garnettii
ENSSSCG00000001400	DDX39B	94	98.457	ENSOGAG00000009067	-	100	98.457	Otolemur_garnettii
ENSSSCG00000001400	DDX39B	100	99.711	ENSOARG00000008787	DDX39B	99	99.769	Ovis_aries
ENSSSCG00000001400	DDX39B	100	100.000	ENSPPAG00000043072	DDX39B	100	100.000	Pan_paniscus
ENSSSCG00000001400	DDX39B	100	100.000	ENSPPRG00000001913	DDX39B	100	99.766	Panthera_pardus
ENSSSCG00000001400	DDX39B	100	99.711	ENSPTIG00000017669	DDX39B	100	98.832	Panthera_tigris_altaica
ENSSSCG00000001400	DDX39B	100	100.000	ENSPTRG00000032509	DDX39B	100	100.000	Pan_troglodytes
ENSSSCG00000001400	DDX39B	100	100.000	ENSPANG00000018609	DDX39B	100	100.000	Papio_anubis
ENSSSCG00000001400	DDX39B	100	95.954	ENSPKIG00000011324	ddx39b	100	91.533	Paramormyrops_kingsleyae
ENSSSCG00000001400	DDX39B	100	99.711	ENSPEMG00000016905	Ddx39b	100	99.299	Peromyscus_maniculatus_bairdii
ENSSSCG00000001400	DDX39B	100	100.000	ENSPCIG00000017572	DDX39B	100	100.000	Phascolarctos_cinereus
ENSSSCG00000001400	DDX39B	100	100.000	ENSPPYG00000016433	DDX39B	100	100.000	Pongo_abelii
ENSSSCG00000001400	DDX39B	82	99.648	ENSPCAG00000003484	DDX39B	100	99.648	Procavia_capensis
ENSSSCG00000001400	DDX39B	100	100.000	ENSPCOG00000018656	DDX39B	100	100.000	Propithecus_coquereli
ENSSSCG00000001400	DDX39B	100	100.000	ENSPVAG00000004653	DDX39B	100	99.533	Pteropus_vampyrus
ENSSSCG00000001400	DDX39B	99	83.284	ENSPNYG00000010382	ddx39b	98	82.904	Pundamilia_nyererei
ENSSSCG00000001400	DDX39B	100	96.532	ENSPNAG00000026926	ddx39b	100	92.202	Pygocentrus_nattereri
ENSSSCG00000001400	DDX39B	100	100.000	ENSRNOG00000000841	Ddx39b	100	99.533	Rattus_norvegicus
ENSSSCG00000001400	DDX39B	100	87.283	ENSRBIG00000031309	DDX39B	100	89.720	Rhinopithecus_bieti
ENSSSCG00000001400	DDX39B	100	100.000	ENSRROG00000039517	DDX39B	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000001400	DDX39B	100	87.283	ENSSBOG00000035513	-	100	89.720	Saimiri_boliviensis_boliviensis
ENSSSCG00000001400	DDX39B	100	100.000	ENSSHAG00000003209	DDX39B	100	100.000	Sarcophilus_harrisii
ENSSSCG00000001400	DDX39B	100	95.954	ENSSFOG00015016107	ddx39b	100	91.762	Scleropages_formosus
ENSSSCG00000001400	DDX39B	100	96.532	ENSSDUG00000011557	ddx39b	100	93.519	Seriola_dumerili
ENSSSCG00000001400	DDX39B	100	96.243	ENSSLDG00000015763	ddx39b	100	93.287	Seriola_lalandi_dorsalis
ENSSSCG00000001400	DDX39B	83	86.707	ENSSARG00000005245	DDX39B	100	87.701	Sorex_araneus
ENSSSCG00000001400	DDX39B	100	99.422	ENSSPUG00000012805	DDX39B	100	97.897	Sphenodon_punctatus
ENSSSCG00000001400	DDX39B	100	71.387	ENSTBEG00000003721	DDX39B	100	76.869	Tupaia_belangeri
ENSSSCG00000001400	DDX39B	100	89.459	ENSTTRG00000014074	DDX39B	100	91.455	Tursiops_truncatus
ENSSSCG00000001400	DDX39B	100	84.195	ENSUAMG00000027335	DDX39B	100	86.977	Ursus_americanus
ENSSSCG00000001400	DDX39B	100	95.376	ENSUMAG00000015124	DDX39B	100	90.888	Ursus_maritimus
ENSSSCG00000001400	DDX39B	56	100.000	ENSVPAG00000009167	-	74	100.000	Vicugna_pacos
ENSSSCG00000001400	DDX39B	100	100.000	ENSVVUG00000019518	DDX39B	99	99.534	Vulpes_vulpes
ENSSSCG00000001400	DDX39B	100	83.908	ENSXETG00000002498	ddx39b	99	83.953	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0032786	positive regulation of DNA-templated transcription, elongation	-	ISS	Process
GO:0051028	mRNA transport	-	IEA	Process
GO:2000002	negative regulation of DNA damage checkpoint	-	ISS	Process