EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000001531 (Gene tree)
Gene ID: 100154606
Gene Symbol: SNRPC
Alias: U1-C|Yhc1
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 15373 bases
Position: chr7:30708103-30723475
Accession: 100154606
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000001662	zf-U1	PF06220.12	1.7e-22	1	1
ENSSSCP00000055297	zf-U1	PF06220.12	2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000055578	SNRPC-201	813	XM_005656224	ENSSSCP00000055297	178 (aa)	XP_005656281	A0A287BG27
ENSSSCT00000001706	SNRPC-202	777	-	ENSSSCP00000001662	159 (aa)	-	F1RZ16

Gene Model

Click here to download ENSSSCG00000001531's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000001531's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000001531	SNRPC	100	100.000	ENSG00000124562	SNRPC	100	100.000	Homo_sapiens
ENSSSCG00000001531	SNRPC	100	98.113	ENSAMEG00000000963	SNRPC	88	98.113	Ailuropoda_melanoleuca
ENSSSCG00000001531	SNRPC	99	96.815	ENSACAG00000015721	SNRPC	87	96.815	Anolis_carolinensis
ENSSSCG00000001531	SNRPC	100	76.101	ENSANAG00000021444	-	61	83.333	Aotus_nancymaae
ENSSSCG00000001531	SNRPC	100	99.371	ENSANAG00000007843	-	100	99.371	Aotus_nancymaae
ENSSSCG00000001531	SNRPC	100	87.421	ENSANAG00000021026	-	100	80.503	Aotus_nancymaae
ENSSSCG00000001531	SNRPC	100	89.308	ENSANAG00000019726	-	92	89.937	Aotus_nancymaae
ENSSSCG00000001531	SNRPC	100	95.597	ENSANAG00000019157	-	100	95.597	Aotus_nancymaae
ENSSSCG00000001531	SNRPC	100	100.000	ENSANAG00000019696	-	100	100.000	Aotus_nancymaae
ENSSSCG00000001531	SNRPC	99	91.772	ENSANAG00000020588	-	92	91.772	Aotus_nancymaae
ENSSSCG00000001531	SNRPC	100	84.906	ENSAMXG00000032641	snrpc	100	72.956	Astyanax_mexicanus
ENSSSCG00000001531	SNRPC	100	100.000	ENSBTAG00000024549	SNRPC	100	100.000	Bos_taurus
ENSSSCG00000001531	SNRPC	100	100.000	ENSCJAG00000015321	-	100	100.000	Callithrix_jacchus
ENSSSCG00000001531	SNRPC	100	97.484	ENSCJAG00000041822	-	100	97.484	Callithrix_jacchus
ENSSSCG00000001531	SNRPC	100	98.742	ENSCJAG00000043055	-	100	98.742	Callithrix_jacchus
ENSSSCG00000001531	SNRPC	74	100.000	ENSCAFG00000001231	-	93	100.000	Canis_familiaris
ENSSSCG00000001531	SNRPC	100	97.500	ENSCAFG00000028988	-	100	97.500	Canis_familiaris
ENSSSCG00000001531	SNRPC	100	95.597	ENSCAFG00000031775	-	100	95.597	Canis_familiaris
ENSSSCG00000001531	SNRPC	100	78.616	ENSCAFG00000025525	-	100	78.616	Canis_familiaris
ENSSSCG00000001531	SNRPC	100	95.597	ENSCAFG00020017383	-	100	95.597	Canis_lupus_dingo
ENSSSCG00000001531	SNRPC	99	88.535	ENSCAFG00020009944	-	90	88.535	Canis_lupus_dingo
ENSSSCG00000001531	SNRPC	100	99.438	ENSCAFG00020026577	-	100	99.438	Canis_lupus_dingo
ENSSSCG00000001531	SNRPC	100	96.226	ENSCAFG00020005758	-	100	96.226	Canis_lupus_dingo
ENSSSCG00000001531	SNRPC	100	100.000	ENSCAFG00020005945	-	100	100.000	Canis_lupus_dingo
ENSSSCG00000001531	SNRPC	100	99.371	ENSCHIG00000012087	-	100	99.371	Capra_hircus
ENSSSCG00000001531	SNRPC	100	72.327	ENSCHIG00000005039	-	100	71.069	Capra_hircus
ENSSSCG00000001531	SNRPC	99	89.241	ENSTSYG00000029745	-	62	94.309	Carlito_syrichta
ENSSSCG00000001531	SNRPC	100	83.019	ENSTSYG00000025721	-	100	76.101	Carlito_syrichta
ENSSSCG00000001531	SNRPC	100	100.000	ENSTSYG00000011216	-	100	100.000	Carlito_syrichta
ENSSSCG00000001531	SNRPC	89	100.000	ENSCAPG00000005161	SNRPC	100	100.000	Cavia_aperea
ENSSSCG00000001531	SNRPC	100	100.000	ENSCPOG00000008563	SNRPC	100	100.000	Cavia_porcellus
ENSSSCG00000001531	SNRPC	98	91.667	ENSCCAG00000022751	-	95	91.667	Cebus_capucinus
ENSSSCG00000001531	SNRPC	99	81.529	ENSCCAG00000026624	-	66	75.796	Cebus_capucinus
ENSSSCG00000001531	SNRPC	98	80.128	ENSCCAG00000022209	-	95	80.128	Cebus_capucinus
ENSSSCG00000001531	SNRPC	100	94.340	ENSCCAG00000036059	-	89	94.340	Cebus_capucinus
ENSSSCG00000001531	SNRPC	100	69.811	ENSCCAG00000028293	-	100	60.112	Cebus_capucinus
ENSSSCG00000001531	SNRPC	100	100.000	ENSCATG00000035787	SNRPC	100	100.000	Cercocebus_atys
ENSSSCG00000001531	SNRPC	100	100.000	ENSCLAG00000016920	SNRPC	100	100.000	Chinchilla_lanigera
ENSSSCG00000001531	SNRPC	99	81.529	ENSCLAG00000010242	-	96	81.529	Chinchilla_lanigera
ENSSSCG00000001531	SNRPC	100	100.000	ENSCSAG00000009821	SNRPC	100	100.000	Chlorocebus_sabaeus
ENSSSCG00000001531	SNRPC	100	81.132	ENSCHOG00000011439	SNRPC	88	82.166	Choloepus_hoffmanni
ENSSSCG00000001531	SNRPC	100	97.484	ENSCPBG00000027142	SNRPC	100	97.484	Chrysemys_picta_bellii
ENSSSCG00000001531	SNRPC	97	49.351	ENSCING00000021229	ci-zf(matrin)-4	51	85.484	Ciona_intestinalis
ENSSSCG00000001531	SNRPC	100	100.000	ENSCANG00000028035	SNRPC	100	100.000	Colobus_angolensis_palliatus
ENSSSCG00000001531	SNRPC	100	87.421	ENSCGRG00001021483	-	100	85.535	Cricetulus_griseus_chok1gshd
ENSSSCG00000001531	SNRPC	100	99.371	ENSCGRG00001009011	-	100	99.371	Cricetulus_griseus_chok1gshd
ENSSSCG00000001531	SNRPC	100	97.484	ENSCGRG00000005005	Snrpc	100	97.484	Cricetulus_griseus_crigri
ENSSSCG00000001531	SNRPC	100	84.906	ENSDARG00000009871	snrpc	100	84.906	Danio_rerio
ENSSSCG00000001531	SNRPC	75	99.160	ENSDNOG00000042403	-	95	99.167	Dasypus_novemcinctus
ENSSSCG00000001531	SNRPC	100	98.742	ENSDNOG00000034699	-	99	98.742	Dasypus_novemcinctus
ENSSSCG00000001531	SNRPC	100	81.132	ENSDORG00000005955	Snrpc	66	80.255	Dipodomys_ordii
ENSSSCG00000001531	SNRPC	95	79.470	ENSDORG00000029823	-	56	96.104	Dipodomys_ordii
ENSSSCG00000001531	SNRPC	52	95.181	ENSETEG00000008756	-	75	94.805	Echinops_telfairi
ENSSSCG00000001531	SNRPC	98	96.154	ENSETEG00000008268	-	100	96.154	Echinops_telfairi
ENSSSCG00000001531	SNRPC	98	92.308	ENSETEG00000011265	-	100	92.308	Echinops_telfairi
ENSSSCG00000001531	SNRPC	100	100.000	ENSEASG00005021007	SNRPC	100	100.000	Equus_asinus_asinus
ENSSSCG00000001531	SNRPC	100	100.000	ENSECAG00000026848	SNRPC	100	100.000	Equus_caballus
ENSSSCG00000001531	SNRPC	99	79.747	ENSEEUG00000014633	SNRPC	90	79.747	Erinaceus_europaeus
ENSSSCG00000001531	SNRPC	100	78.616	ENSELUG00000000815	SNRPC	50	94.872	Esox_lucius
ENSSSCG00000001531	SNRPC	100	100.000	ENSFCAG00000044077	-	100	100.000	Felis_catus
ENSSSCG00000001531	SNRPC	100	93.082	ENSFCAG00000031775	-	88	93.082	Felis_catus
ENSSSCG00000001531	SNRPC	100	98.742	ENSFALG00000003756	SNRPC	100	98.742	Ficedula_albicollis
ENSSSCG00000001531	SNRPC	100	100.000	ENSFDAG00000018111	SNRPC	100	100.000	Fukomys_damarensis
ENSSSCG00000001531	SNRPC	100	96.875	ENSGALG00000002773	SNRPC	100	96.875	Gallus_gallus
ENSSSCG00000001531	SNRPC	100	97.484	ENSGAGG00000003063	SNRPC	100	97.484	Gopherus_agassizii
ENSSSCG00000001531	SNRPC	100	100.000	ENSGGOG00000012499	SNRPC	100	100.000	Gorilla_gorilla
ENSSSCG00000001531	SNRPC	100	100.000	ENSHGLG00000013981	SNRPC	100	100.000	Heterocephalus_glaber_female
ENSSSCG00000001531	SNRPC	81	75.194	ENSHGLG00000005871	-	100	75.472	Heterocephalus_glaber_female
ENSSSCG00000001531	SNRPC	100	81.132	ENSHGLG00000017741	-	100	78.616	Heterocephalus_glaber_female
ENSSSCG00000001531	SNRPC	100	100.000	ENSHGLG00100009478	SNRPC	100	100.000	Heterocephalus_glaber_male
ENSSSCG00000001531	SNRPC	100	81.132	ENSHGLG00100010786	-	100	78.616	Heterocephalus_glaber_male
ENSSSCG00000001531	SNRPC	100	94.969	ENSHGLG00100017764	-	100	94.969	Heterocephalus_glaber_male
ENSSSCG00000001531	SNRPC	100	85.535	ENSIPUG00000024851	snrpc	100	85.535	Ictalurus_punctatus
ENSSSCG00000001531	SNRPC	100	100.000	ENSSTOG00000013786	SNRPC	100	100.000	Ictidomys_tridecemlineatus
ENSSSCG00000001531	SNRPC	100	99.371	ENSJJAG00000021741	Snrpc	100	99.371	Jaculus_jaculus
ENSSSCG00000001531	SNRPC	100	88.125	ENSLACG00000013753	SNRPC	88	91.139	Latimeria_chalumnae
ENSSSCG00000001531	SNRPC	100	100.000	ENSLAFG00000013534	SNRPC	100	100.000	Loxodonta_africana
ENSSSCG00000001531	SNRPC	100	99.371	ENSMFAG00000030525	-	100	99.371	Macaca_fascicularis
ENSSSCG00000001531	SNRPC	100	100.000	ENSMFAG00000031764	-	100	100.000	Macaca_fascicularis
ENSSSCG00000001531	SNRPC	100	89.937	ENSMMUG00000045425	-	100	89.937	Macaca_mulatta
ENSSSCG00000001531	SNRPC	100	98.742	ENSMMUG00000000869	-	97	98.742	Macaca_mulatta
ENSSSCG00000001531	SNRPC	100	98.742	ENSMMUG00000039415	-	100	98.742	Macaca_mulatta
ENSSSCG00000001531	SNRPC	100	100.000	ENSMNEG00000032731	SNRPC	100	100.000	Macaca_nemestrina
ENSSSCG00000001531	SNRPC	100	100.000	ENSMLEG00000033916	-	100	100.000	Mandrillus_leucophaeus
ENSSSCG00000001531	SNRPC	97	90.968	ENSMLEG00000040224	-	89	90.968	Mandrillus_leucophaeus
ENSSSCG00000001531	SNRPC	100	96.855	ENSMGAG00000006054	SNRPC	100	96.855	Meleagris_gallopavo
ENSSSCG00000001531	SNRPC	100	99.371	ENSMICG00000007339	-	100	99.371	Microcebus_murinus
ENSSSCG00000001531	SNRPC	100	99.371	ENSMICG00000032183	-	100	99.371	Microcebus_murinus
ENSSSCG00000001531	SNRPC	100	84.906	ENSMICG00000036552	-	87	80.128	Microcebus_murinus
ENSSSCG00000001531	SNRPC	100	88.050	ENSMICG00000009130	-	100	88.679	Microcebus_murinus
ENSSSCG00000001531	SNRPC	100	99.371	ENSMOCG00000017609	Snrpc	100	99.371	Microtus_ochrogaster
ENSSSCG00000001531	SNRPC	100	98.742	ENSMODG00000013904	-	100	98.742	Monodelphis_domestica
ENSSSCG00000001531	SNRPC	100	99.371	MGP_CAROLIEiJ_G0021308	Snrpc	100	99.371	Mus_caroli
ENSSSCG00000001531	SNRPC	100	99.371	ENSMUSG00000024217	Snrpc	100	99.371	Mus_musculus
ENSSSCG00000001531	SNRPC	74	99.153	MGP_SPRETEiJ_G0022221	-	98	99.153	Mus_spretus
ENSSSCG00000001531	SNRPC	100	98.113	ENSMPUG00000003210	SNRPC	100	98.113	Mustela_putorius_furo
ENSSSCG00000001531	SNRPC	100	98.113	ENSMLUG00000002488	SNRPC	100	98.113	Myotis_lucifugus
ENSSSCG00000001531	SNRPC	100	99.371	ENSNGAG00000019686	Snrpc	100	99.371	Nannospalax_galili
ENSSSCG00000001531	SNRPC	100	100.000	ENSNLEG00000034810	SNRPC	100	100.000	Nomascus_leucogenys
ENSSSCG00000001531	SNRPC	89	99.296	ENSMEUG00000009300	SNRPC	100	99.296	Notamacropus_eugenii
ENSSSCG00000001531	SNRPC	100	99.371	ENSODEG00000020201	-	100	99.371	Octodon_degus
ENSSSCG00000001531	SNRPC	100	98.742	ENSODEG00000019633	-	100	98.742	Octodon_degus
ENSSSCG00000001531	SNRPC	100	100.000	ENSODEG00000018985	-	100	100.000	Octodon_degus
ENSSSCG00000001531	SNRPC	100	100.000	ENSODEG00000020370	-	100	100.000	Octodon_degus
ENSSSCG00000001531	SNRPC	100	100.000	ENSODEG00000017080	-	100	100.000	Octodon_degus
ENSSSCG00000001531	SNRPC	77	94.309	ENSODEG00000006008	-	88	94.309	Octodon_degus
ENSSSCG00000001531	SNRPC	91	95.270	ENSOANG00000003405	SNRPC	100	95.270	Ornithorhynchus_anatinus
ENSSSCG00000001531	SNRPC	100	100.000	ENSOCUG00000026668	-	100	100.000	Oryctolagus_cuniculus
ENSSSCG00000001531	SNRPC	100	97.484	ENSOCUG00000023292	-	100	97.484	Oryctolagus_cuniculus
ENSSSCG00000001531	SNRPC	100	98.742	ENSOCUG00000026430	-	99	98.742	Oryctolagus_cuniculus
ENSSSCG00000001531	SNRPC	99	99.363	ENSOGAG00000008755	-	88	99.363	Otolemur_garnettii
ENSSSCG00000001531	SNRPC	97	84.416	ENSOGAG00000028405	-	99	81.818	Otolemur_garnettii
ENSSSCG00000001531	SNRPC	100	98.113	ENSOGAG00000026269	-	100	98.113	Otolemur_garnettii
ENSSSCG00000001531	SNRPC	100	100.000	ENSOARG00000010823	SNRPC	100	100.000	Ovis_aries
ENSSSCG00000001531	SNRPC	100	100.000	ENSPPAG00000043871	SNRPC	100	100.000	Pan_paniscus
ENSSSCG00000001531	SNRPC	100	100.000	ENSPPRG00000008647	-	100	100.000	Panthera_pardus
ENSSSCG00000001531	SNRPC	96	60.390	ENSPPRG00000016017	-	86	54.902	Panthera_pardus
ENSSSCG00000001531	SNRPC	90	68.293	ENSPTIG00000011880	-	81	49.091	Panthera_tigris_altaica
ENSSSCG00000001531	SNRPC	100	100.000	ENSPTIG00000021867	-	100	100.000	Panthera_tigris_altaica
ENSSSCG00000001531	SNRPC	97	60.000	ENSPTIG00000013329	-	50	83.117	Panthera_tigris_altaica
ENSSSCG00000001531	SNRPC	100	100.000	ENSPTRG00000018070	SNRPC	100	100.000	Pan_troglodytes
ENSSSCG00000001531	SNRPC	100	88.679	ENSPANG00000018228	-	94	88.679	Papio_anubis
ENSSSCG00000001531	SNRPC	100	100.000	ENSPANG00000022802	-	100	100.000	Papio_anubis
ENSSSCG00000001531	SNRPC	99	96.178	ENSPSIG00000004876	SNRPC	77	96.178	Pelodiscus_sinensis
ENSSSCG00000001531	SNRPC	100	99.371	ENSPEMG00000010773	Snrpc	100	99.371	Peromyscus_maniculatus_bairdii
ENSSSCG00000001531	SNRPC	100	87.421	ENSPEMG00000002763	-	100	85.535	Peromyscus_maniculatus_bairdii
ENSSSCG00000001531	SNRPC	52	100.000	ENSPPYG00000029902	-	84	100.000	Pongo_abelii
ENSSSCG00000001531	SNRPC	99	99.363	ENSPCAG00000016885	SNRPC	90	99.363	Procavia_capensis
ENSSSCG00000001531	SNRPC	100	100.000	ENSPCOG00000004904	SNRPC	100	100.000	Propithecus_coquereli
ENSSSCG00000001531	SNRPC	99	98.726	ENSPVAG00000015597	SNRPC	87	98.726	Pteropus_vampyrus
ENSSSCG00000001531	SNRPC	100	99.371	ENSRNOG00000000493	Snrpc	100	99.371	Rattus_norvegicus
ENSSSCG00000001531	SNRPC	100	100.000	ENSRBIG00000037567	-	100	100.000	Rhinopithecus_bieti
ENSSSCG00000001531	SNRPC	100	99.371	ENSRBIG00000022998	-	100	99.371	Rhinopithecus_bieti
ENSSSCG00000001531	SNRPC	100	89.308	ENSRBIG00000036353	-	83	89.308	Rhinopithecus_bieti
ENSSSCG00000001531	SNRPC	100	99.371	ENSRBIG00000014819	-	100	99.371	Rhinopithecus_bieti
ENSSSCG00000001531	SNRPC	100	100.000	ENSRROG00000041300	SNRPC	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000001531	SNRPC	100	100.000	ENSSBOG00000031528	-	100	100.000	Saimiri_boliviensis_boliviensis
ENSSSCG00000001531	SNRPC	95	82.781	ENSSBOG00000032361	-	66	81.250	Saimiri_boliviensis_boliviensis
ENSSSCG00000001531	SNRPC	98	82.692	ENSSBOG00000023189	-	91	82.692	Saimiri_boliviensis_boliviensis
ENSSSCG00000001531	SNRPC	98	81.410	ENSSBOG00000032882	-	93	81.410	Saimiri_boliviensis_boliviensis
ENSSSCG00000001531	SNRPC	99	98.726	ENSSHAG00000000945	-	87	98.726	Sarcophilus_harrisii
ENSSSCG00000001531	SNRPC	100	81.132	ENSSFOG00015019150	snrpc	100	81.132	Scleropages_formosus
ENSSSCG00000001531	SNRPC	100	76.101	ENSSARG00000008970	SNRPC	89	76.101	Sorex_araneus
ENSSSCG00000001531	SNRPC	100	98.113	ENSSPUG00000002502	SNRPC	100	98.113	Sphenodon_punctatus
ENSSSCG00000001531	SNRPC	100	97.484	ENSTGUG00000001773	SNRPC	100	97.484	Taeniopygia_guttata
ENSSSCG00000001531	SNRPC	98	92.308	ENSTBEG00000013022	-	100	92.308	Tupaia_belangeri
ENSSSCG00000001531	SNRPC	98	73.718	ENSTBEG00000015356	-	68	91.667	Tupaia_belangeri
ENSSSCG00000001531	SNRPC	89	72.535	ENSTBEG00000016759	-	79	72.535	Tupaia_belangeri
ENSSSCG00000001531	SNRPC	100	98.113	ENSTTRG00000007827	SNRPC	87	98.113	Tursiops_truncatus
ENSSSCG00000001531	SNRPC	78	97.826	ENSUAMG00000014125	SNRPC	93	97.826	Ursus_americanus
ENSSSCG00000001531	SNRPC	100	98.876	ENSUMAG00000010869	SNRPC	100	98.876	Ursus_maritimus
ENSSSCG00000001531	SNRPC	89	74.648	ENSVPAG00000003106	SNRPC	79	74.648	Vicugna_pacos
ENSSSCG00000001531	SNRPC	100	98.742	ENSVVUG00000021947	-	100	98.742	Vulpes_vulpes
ENSSSCG00000001531	SNRPC	97	94.805	ENSVVUG00000010467	-	87	94.872	Vulpes_vulpes
ENSSSCG00000001531	SNRPC	100	89.937	ENSXETG00000024721	snrpc	100	89.937	Xenopus_tropicalis