EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000001816 (Gene tree)
Gene ID: 100141304
Gene Symbol: BLM
Alias: BS|RECQ2|RECQL3
Full Name: BLM RecQ like helicase
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 98980 bases
Position: chr7:53317540-53416519
Accession: 100141304
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000001986	HRDC	PF00570.23	7.2e-12	1	1
ENSSSCP00000044541	HRDC	PF00570.23	7.3e-12	1	1
ENSSSCP00000001985	HRDC	PF00570.23	7.7e-12	1	1
ENSSSCP00000001986	BDHCT	PF08072.11	1.9e-20	1	1
ENSSSCP00000044541	BDHCT	PF08072.11	1.9e-20	1	1
ENSSSCP00000001985	BDHCT	PF08072.11	2e-20	1	1
ENSSSCP00000001986	DEAD	PF00270.29	4.7e-20	1	1
ENSSSCP00000001985	DEAD	PF00270.29	5.1e-20	1	1
ENSSSCP00000044541	DEAD	PF00270.29	1.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000002034	BLM-202	8483	XM_021097881	ENSSSCP00000001985	1432 (aa)	XP_020953540	F1RMJ3
ENSSSCT00000002035	BLM-201	4707	-	ENSSSCP00000001986	1374 (aa)	-	F1RMJ2
ENSSSCT00000062097	BLM-203	7179	-	ENSSSCP00000044541	1368 (aa)	-	A0A287AKX6

Gene Model

Click here to download ENSSSCG00000001816's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03440	Homologous recombination	KEGG
ssc03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000001816's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000001816	BLM	99	83.176	ENSG00000197299	BLM	100	82.320	Homo_sapiens
ENSSSCG00000001816	BLM	65	65.295	ENSAPOG00000017966	blm	59	65.295	Acanthochromis_polyacanthus
ENSSSCG00000001816	BLM	99	82.362	ENSAMEG00000013843	BLM	100	82.238	Ailuropoda_melanoleuca
ENSSSCG00000001816	BLM	65	65.548	ENSACIG00000023762	blm	68	62.456	Amphilophus_citrinellus
ENSSSCG00000001816	BLM	62	65.437	ENSAOCG00000003318	blm	61	65.437	Amphiprion_ocellaris
ENSSSCG00000001816	BLM	62	65.437	ENSAPEG00000018105	blm	60	65.437	Amphiprion_percula
ENSSSCG00000001816	BLM	82	70.334	ENSATEG00000006421	blm	67	67.215	Anabas_testudineus
ENSSSCG00000001816	BLM	81	58.478	ENSAPLG00000006878	BLM	99	57.842	Anas_platyrhynchos
ENSSSCG00000001816	BLM	74	57.807	ENSACAG00000014275	BLM	58	70.799	Anolis_carolinensis
ENSSSCG00000001816	BLM	99	82.447	ENSANAG00000038415	BLM	100	82.180	Aotus_nancymaae
ENSSSCG00000001816	BLM	87	65.820	ENSACLG00000020354	blm	88	63.669	Astatotilapia_calliptera
ENSSSCG00000001816	BLM	52	62.549	ENSAMXG00000016970	blm	59	59.740	Astyanax_mexicanus
ENSSSCG00000001816	BLM	92	86.585	ENSBTAG00000020301	BLM	100	85.714	Bos_taurus
ENSSSCG00000001816	BLM	99	82.520	ENSCJAG00000009803	BLM	100	82.180	Callithrix_jacchus
ENSSSCG00000001816	BLM	99	83.200	ENSCAFG00000012385	BLM	100	82.973	Canis_familiaris
ENSSSCG00000001816	BLM	99	83.200	ENSCAFG00020016111	BLM	94	91.792	Canis_lupus_dingo
ENSSSCG00000001816	BLM	99	85.298	ENSCHIG00000010329	BLM	100	86.047	Capra_hircus
ENSSSCG00000001816	BLM	99	81.441	ENSTSYG00000012368	BLM	100	80.726	Carlito_syrichta
ENSSSCG00000001816	BLM	85	85.116	ENSCAPG00000017976	BLM	99	84.249	Cavia_aperea
ENSSSCG00000001816	BLM	99	75.925	ENSCPOG00000001761	BLM	100	75.506	Cavia_porcellus
ENSSSCG00000001816	BLM	99	81.692	ENSCCAG00000023069	BLM	100	81.386	Cebus_capucinus
ENSSSCG00000001816	BLM	99	82.739	ENSCATG00000040609	BLM	92	94.070	Cercocebus_atys
ENSSSCG00000001816	BLM	99	75.855	ENSCLAG00000012111	BLM	100	76.064	Chinchilla_lanigera
ENSSSCG00000001816	BLM	99	82.332	ENSCSAG00000017040	BLM	100	81.515	Chlorocebus_sabaeus
ENSSSCG00000001816	BLM	91	78.737	ENSCHOG00000006255	BLM	93	78.737	Choloepus_hoffmanni
ENSSSCG00000001816	BLM	89	55.650	ENSCPBG00000025000	BLM	97	73.743	Chrysemys_picta_bellii
ENSSSCG00000001816	BLM	87	91.667	ENSCANG00000034808	BLM	100	91.667	Colobus_angolensis_palliatus
ENSSSCG00000001816	BLM	99	77.495	ENSCGRG00001024897	Blm	100	77.498	Cricetulus_griseus_chok1gshd
ENSSSCG00000001816	BLM	70	72.606	ENSCGRG00000016261	Blm	97	73.223	Cricetulus_griseus_crigri
ENSSSCG00000001816	BLM	72	65.385	ENSCSEG00000013483	blm	67	65.625	Cynoglossus_semilaevis
ENSSSCG00000001816	BLM	83	64.946	ENSDARG00000077089	blm	80	65.625	Danio_rerio
ENSSSCG00000001816	BLM	99	90.055	ENSDNOG00000010159	BLM	96	90.055	Dasypus_novemcinctus
ENSSSCG00000001816	BLM	73	80.627	ENSDORG00000011033	Blm	100	80.722	Dipodomys_ordii
ENSSSCG00000001816	BLM	61	39.681	FBgn0002906	Blm	55	39.789	Drosophila_melanogaster
ENSSSCG00000001816	BLM	81	85.000	ENSETEG00000015019	BLM	82	85.000	Echinops_telfairi
ENSSSCG00000001816	BLM	99	83.443	ENSEASG00005006727	BLM	95	90.826	Equus_asinus_asinus
ENSSSCG00000001816	BLM	99	92.572	ENSECAG00000011405	BLM	96	92.572	Equus_caballus
ENSSSCG00000001816	BLM	99	88.430	ENSEEUG00000001434	BLM	95	88.430	Erinaceus_europaeus
ENSSSCG00000001816	BLM	83	70.028	ENSELUG00000019098	blm	59	69.848	Esox_lucius
ENSSSCG00000001816	BLM	99	81.428	ENSFCAG00000006087	BLM	100	82.635	Felis_catus
ENSSSCG00000001816	BLM	88	53.209	ENSFALG00000010981	BLM	89	56.574	Ficedula_albicollis
ENSSSCG00000001816	BLM	99	71.161	ENSFDAG00000012658	BLM	100	71.161	Fukomys_damarensis
ENSSSCG00000001816	BLM	62	65.116	ENSFHEG00000002553	blm	61	65.527	Fundulus_heteroclitus
ENSSSCG00000001816	BLM	83	63.425	ENSGMOG00000016431	blm	90	61.990	Gadus_morhua
ENSSSCG00000001816	BLM	99	51.915	ENSGALG00000008256	BLM	78	72.765	Gallus_gallus
ENSSSCG00000001816	BLM	64	67.635	ENSGAFG00000001117	blm	68	65.256	Gambusia_affinis
ENSSSCG00000001816	BLM	67	64.883	ENSGACG00000010863	blm	100	73.954	Gasterosteus_aculeatus
ENSSSCG00000001816	BLM	92	52.986	ENSGAGG00000005383	BLM	98	72.230	Gopherus_agassizii
ENSSSCG00000001816	BLM	99	82.957	ENSGGOG00000007710	BLM	92	94.340	Gorilla_gorilla
ENSSSCG00000001816	BLM	87	66.074	ENSHBUG00000015943	blm	88	63.905	Haplochromis_burtoni
ENSSSCG00000001816	BLM	99	89.409	ENSHGLG00000013231	BLM	93	89.409	Heterocephalus_glaber_female
ENSSSCG00000001816	BLM	72	55.734	ENSHCOG00000011455	blm	84	62.057	Hippocampus_comes
ENSSSCG00000001816	BLM	58	64.250	ENSIPUG00000000529	blm	68	64.923	Ictalurus_punctatus
ENSSSCG00000001816	BLM	99	79.448	ENSSTOG00000005000	BLM	100	78.955	Ictidomys_tridecemlineatus
ENSSSCG00000001816	BLM	66	87.072	ENSJJAG00000016322	Blm	94	87.072	Jaculus_jaculus
ENSSSCG00000001816	BLM	61	65.050	ENSKMAG00000016608	blm	60	63.732	Kryptolebias_marmoratus
ENSSSCG00000001816	BLM	83	69.865	ENSLACG00000006490	BLM	80	69.865	Latimeria_chalumnae
ENSSSCG00000001816	BLM	82	66.030	ENSLOCG00000014302	blm	99	46.904	Lepisosteus_oculatus
ENSSSCG00000001816	BLM	99	82.884	ENSMFAG00000042982	BLM	92	94.070	Macaca_fascicularis
ENSSSCG00000001816	BLM	99	82.811	ENSMMUG00000019526	BLM	92	94.070	Macaca_mulatta
ENSSSCG00000001816	BLM	99	79.133	ENSMNEG00000031251	BLM	92	93.801	Macaca_nemestrina
ENSSSCG00000001816	BLM	99	80.262	ENSMLEG00000032934	BLM	100	79.455	Mandrillus_leucophaeus
ENSSSCG00000001816	BLM	65	65.804	ENSMAMG00000008726	blm	64	66.396	Mastacembelus_armatus
ENSSSCG00000001816	BLM	86	66.537	ENSMZEG00005022323	blm	59	63.432	Maylandia_zebra
ENSSSCG00000001816	BLM	99	76.945	ENSMAUG00000008953	Blm	99	77.111	Mesocricetus_auratus
ENSSSCG00000001816	BLM	99	82.897	ENSMICG00000034442	BLM	100	83.170	Microcebus_murinus
ENSSSCG00000001816	BLM	99	77.349	ENSMOCG00000016367	Blm	99	76.869	Microtus_ochrogaster
ENSSSCG00000001816	BLM	69	63.133	ENSMMOG00000006959	blm	70	63.133	Mola_mola
ENSSSCG00000001816	BLM	99	84.362	ENSMODG00000019449	BLM	95	84.362	Monodelphis_domestica
ENSSSCG00000001816	BLM	65	66.303	ENSMALG00000007323	blm	64	66.303	Monopterus_albus
ENSSSCG00000001816	BLM	99	74.257	MGP_CAROLIEiJ_G0029907	Blm	100	73.747	Mus_caroli
ENSSSCG00000001816	BLM	99	74.603	ENSMUSG00000030528	Blm	100	74.236	Mus_musculus
ENSSSCG00000001816	BLM	99	74.728	MGP_PahariEiJ_G0013129	Blm	100	74.704	Mus_pahari
ENSSSCG00000001816	BLM	99	74.619	MGP_SPRETEiJ_G0031009	Blm	100	74.582	Mus_spretus
ENSSSCG00000001816	BLM	88	81.736	ENSMPUG00000015657	BLM	99	81.405	Mustela_putorius_furo
ENSSSCG00000001816	BLM	99	89.163	ENSMLUG00000014697	BLM	95	89.163	Myotis_lucifugus
ENSSSCG00000001816	BLM	99	79.155	ENSNGAG00000001275	Blm	100	78.462	Nannospalax_galili
ENSSSCG00000001816	BLM	86	66.451	ENSNBRG00000019702	blm	59	63.345	Neolamprologus_brichardi
ENSSSCG00000001816	BLM	99	81.719	ENSNLEG00000012087	BLM	100	82.749	Nomascus_leucogenys
ENSSSCG00000001816	BLM	99	62.518	ENSMEUG00000007253	BLM	99	62.181	Notamacropus_eugenii
ENSSSCG00000001816	BLM	99	86.030	ENSOPRG00000011667	BLM	92	89.655	Ochotona_princeps
ENSSSCG00000001816	BLM	73	77.873	ENSODEG00000015373	BLM	100	77.018	Octodon_degus
ENSSSCG00000001816	BLM	86	66.452	ENSONIG00000015193	blm	89	63.593	Oreochromis_niloticus
ENSSSCG00000001816	BLM	51	85.070	ENSOANG00000009316	-	99	82.943	Ornithorhynchus_anatinus
ENSSSCG00000001816	BLM	99	75.109	ENSOCUG00000013969	BLM	99	74.336	Oryctolagus_cuniculus
ENSSSCG00000001816	BLM	61	69.114	ENSORLG00000008110	blm	66	66.078	Oryzias_latipes
ENSSSCG00000001816	BLM	82	69.510	ENSORLG00020004812	blm	85	66.411	Oryzias_latipes_hni
ENSSSCG00000001816	BLM	86	66.365	ENSORLG00015018640	blm	87	63.744	Oryzias_latipes_hsok
ENSSSCG00000001816	BLM	61	68.811	ENSOMEG00000023545	blm	66	65.903	Oryzias_melastigma
ENSSSCG00000001816	BLM	99	77.713	ENSOGAG00000005708	BLM	100	77.251	Otolemur_garnettii
ENSSSCG00000001816	BLM	99	84.934	ENSOARG00000012875	BLM	100	84.846	Ovis_aries
ENSSSCG00000001816	BLM	99	82.811	ENSPPAG00000032173	BLM	100	82.110	Pan_paniscus
ENSSSCG00000001816	BLM	99	81.342	ENSPPRG00000002471	BLM	100	83.234	Panthera_pardus
ENSSSCG00000001816	BLM	99	81.132	ENSPTIG00000016168	BLM	100	81.202	Panthera_tigris_altaica
ENSSSCG00000001816	BLM	99	82.666	ENSPTRG00000007460	BLM	100	81.831	Pan_troglodytes
ENSSSCG00000001816	BLM	99	82.739	ENSPANG00000018572	BLM	92	93.801	Papio_anubis
ENSSSCG00000001816	BLM	89	66.323	ENSPKIG00000008954	blm	68	63.604	Paramormyrops_kingsleyae
ENSSSCG00000001816	BLM	52	67.586	ENSPMGG00000006629	blm	80	67.586	Periophthalmus_magnuspinnatus
ENSSSCG00000001816	BLM	99	77.293	ENSPEMG00000017348	Blm	100	76.816	Peromyscus_maniculatus_bairdii
ENSSSCG00000001816	BLM	51	58.485	ENSPMAG00000000445	blm	96	58.626	Petromyzon_marinus
ENSSSCG00000001816	BLM	99	84.066	ENSPCIG00000006609	BLM	95	84.066	Phascolarctos_cinereus
ENSSSCG00000001816	BLM	64	67.729	ENSPFOG00000005059	blm	68	65.385	Poecilia_formosa
ENSSSCG00000001816	BLM	65	68.144	ENSPLAG00000017344	blm	68	65.769	Poecilia_latipinna
ENSSSCG00000001816	BLM	64	67.729	ENSPMEG00000000321	blm	68	65.385	Poecilia_mexicana
ENSSSCG00000001816	BLM	62	64.050	ENSPREG00000007715	blm	61	64.463	Poecilia_reticulata
ENSSSCG00000001816	BLM	99	81.282	ENSPPYG00000006784	BLM	100	80.433	Pongo_abelii
ENSSSCG00000001816	BLM	72	96.970	ENSPCAG00000008960	BLM	73	96.970	Procavia_capensis
ENSSSCG00000001816	BLM	99	78.282	ENSPCOG00000000439	BLM	100	80.240	Propithecus_coquereli
ENSSSCG00000001816	BLM	82	97.610	ENSPVAG00000011642	BLM	88	95.527	Pteropus_vampyrus
ENSSSCG00000001816	BLM	87	53.671	ENSPNYG00000010956	blm	87	52.000	Pundamilia_nyererei
ENSSSCG00000001816	BLM	57	67.089	ENSPNAG00000011714	blm	59	64.720	Pygocentrus_nattereri
ENSSSCG00000001816	BLM	99	73.324	ENSRNOG00000011213	Blm	100	73.566	Rattus_norvegicus
ENSSSCG00000001816	BLM	99	80.335	ENSRBIG00000029656	BLM	100	85.090	Rhinopithecus_bieti
ENSSSCG00000001816	BLM	99	82.010	ENSRROG00000037871	BLM	92	92.992	Rhinopithecus_roxellana
ENSSSCG00000001816	BLM	90	92.627	ENSSBOG00000030957	BLM	100	81.195	Saimiri_boliviensis_boliviensis
ENSSSCG00000001816	BLM	99	65.000	ENSSHAG00000007988	BLM	96	82.944	Sarcophilus_harrisii
ENSSSCG00000001816	BLM	51	68.392	ENSSFOG00015015462	blm	63	64.841	Scleropages_formosus
ENSSSCG00000001816	BLM	65	64.979	ENSSMAG00000001120	blm	64	65.621	Scophthalmus_maximus
ENSSSCG00000001816	BLM	62	66.074	ENSSDUG00000010955	blm	62	65.940	Seriola_dumerili
ENSSSCG00000001816	BLM	78	50.342	ENSSLDG00000000634	blm	80	50.256	Seriola_lalandi_dorsalis
ENSSSCG00000001816	BLM	94	69.606	ENSSARG00000006398	BLM	96	75.566	Sorex_araneus
ENSSSCG00000001816	BLM	82	55.038	ENSSPUG00000000013	BLM	99	54.545	Sphenodon_punctatus
ENSSSCG00000001816	BLM	62	65.847	ENSSPAG00000013999	blm	59	62.854	Stegastes_partitus
ENSSSCG00000001816	BLM	79	52.193	ENSTGUG00000009959	-	99	52.155	Taeniopygia_guttata
ENSSSCG00000001816	BLM	80	51.647	ENSTRUG00000019860	blm	89	48.281	Takifugu_rubripes
ENSSSCG00000001816	BLM	83	65.027	ENSTNIG00000019246	blm	67	64.891	Tetraodon_nigroviridis
ENSSSCG00000001816	BLM	83	84.411	ENSTBEG00000006706	BLM	75	90.639	Tupaia_belangeri
ENSSSCG00000001816	BLM	99	87.828	ENSTTRG00000016386	BLM	100	87.552	Tursiops_truncatus
ENSSSCG00000001816	BLM	99	82.205	ENSUMAG00000009105	BLM	97	92.202	Ursus_maritimus
ENSSSCG00000001816	BLM	99	83.555	ENSVPAG00000000085	BLM	99	84.605	Vicugna_pacos
ENSSSCG00000001816	BLM	95	91.343	ENSVVUG00000006402	BLM	100	90.247	Vulpes_vulpes
ENSSSCG00000001816	BLM	95	72.902	ENSXETG00000007847	blm	56	72.902	Xenopus_tropicalis
ENSSSCG00000001816	BLM	59	61.295	ENSXCOG00000020227	blm	57	61.708	Xiphophorus_couchianus
ENSSSCG00000001816	BLM	59	64.601	ENSXMAG00000002951	blm	58	64.463	Xiphophorus_maculatus