EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000001903 (Gene tree)
Gene ID: 100156966
Gene Symbol: EDC3
Alias: FLJ21128|LSM16|YJDC|YJEFN2|hYjeF_N2-15q23
Full Name: enhancer of mRNA decapping 3
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 68912 bases
Position: chr7:58828670-58897581
Accession: 100156966
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000002082	FDF	PF09532.10	2.4e-18	1	1
ENSSSCP00000052693	FDF	PF09532.10	3.6e-18	1	1
ENSSSCP00000046838	FDF	PF09532.10	5.8e-06	1	1
ENSSSCP00000046838	LSM14	PF12701.7	9.1e-10	1	1
ENSSSCP00000052693	LSM14	PF12701.7	9.7e-10	1	1
ENSSSCP00000002082	LSM14	PF12701.7	1.1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000041525	EDC3-201	1641	-	ENSSSCP00000052693	467 (aa)	-	A0A287B8P4
ENSSSCT00000053223	EDC3-202	1572	-	ENSSSCP00000046838	444 (aa)	-	A0A287ARX6
ENSSSCT00000002132	EDC3-203	6520	XM_001927872	ENSSSCP00000002082	508 (aa)	XP_001927907	F1SIE7

Gene Model

Click here to download ENSSSCG00000001903's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000001903's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000001903	EDC3	100	97.441	ENSG00000179151	EDC3	100	100.000	Homo_sapiens
ENSSSCG00000001903	EDC3	100	72.292	ENSAPOG00000010791	edc3	100	72.292	Acanthochromis_polyacanthus
ENSSSCG00000001903	EDC3	100	56.795	ENSAPOG00000008655	EDC3	100	56.795	Acanthochromis_polyacanthus
ENSSSCG00000001903	EDC3	100	96.850	ENSAMEG00000008963	EDC3	100	96.850	Ailuropoda_melanoleuca
ENSSSCG00000001903	EDC3	99	60.484	ENSACIG00000005330	EDC3	99	60.887	Amphilophus_citrinellus
ENSSSCG00000001903	EDC3	100	71.042	ENSACIG00000017751	edc3	100	71.042	Amphilophus_citrinellus
ENSSSCG00000001903	EDC3	100	62.526	ENSAOCG00000009103	-	100	62.526	Amphiprion_ocellaris
ENSSSCG00000001903	EDC3	100	72.803	ENSAOCG00000005431	edc3	100	72.803	Amphiprion_ocellaris
ENSSSCG00000001903	EDC3	100	72.803	ENSAPEG00000000968	edc3	100	72.803	Amphiprion_percula
ENSSSCG00000001903	EDC3	100	62.526	ENSAPEG00000007841	EDC3	100	62.526	Amphiprion_percula
ENSSSCG00000001903	EDC3	100	62.630	ENSATEG00000004205	-	100	62.630	Anabas_testudineus
ENSSSCG00000001903	EDC3	100	71.967	ENSATEG00000015505	edc3	100	71.967	Anabas_testudineus
ENSSSCG00000001903	EDC3	90	86.593	ENSAPLG00000008957	EDC3	100	86.593	Anas_platyrhynchos
ENSSSCG00000001903	EDC3	78	86.902	ENSACAG00000000460	-	100	86.902	Anolis_carolinensis
ENSSSCG00000001903	EDC3	100	97.638	ENSANAG00000024078	EDC3	100	97.638	Aotus_nancymaae
ENSSSCG00000001903	EDC3	100	70.208	ENSACLG00000007232	edc3	100	70.208	Astatotilapia_calliptera
ENSSSCG00000001903	EDC3	99	63.136	ENSACLG00000018776	-	99	63.136	Astatotilapia_calliptera
ENSSSCG00000001903	EDC3	100	70.680	ENSAMXG00000001589	edc3	100	70.680	Astyanax_mexicanus
ENSSSCG00000001903	EDC3	100	97.047	ENSBTAG00000007308	EDC3	100	97.047	Bos_taurus
ENSSSCG00000001903	EDC3	100	97.835	ENSCJAG00000017681	EDC3	100	97.835	Callithrix_jacchus
ENSSSCG00000001903	EDC3	100	96.850	ENSCAFG00000017935	EDC3	100	96.850	Canis_familiaris
ENSSSCG00000001903	EDC3	100	96.850	ENSCAFG00020003909	EDC3	100	96.850	Canis_lupus_dingo
ENSSSCG00000001903	EDC3	100	96.850	ENSCHIG00000023658	EDC3	100	96.850	Capra_hircus
ENSSSCG00000001903	EDC3	100	96.850	ENSTSYG00000004822	EDC3	100	96.850	Carlito_syrichta
ENSSSCG00000001903	EDC3	100	95.079	ENSCPOG00000015595	EDC3	100	95.079	Cavia_porcellus
ENSSSCG00000001903	EDC3	100	98.031	ENSCCAG00000021663	EDC3	100	98.031	Cebus_capucinus
ENSSSCG00000001903	EDC3	100	97.835	ENSCATG00000037511	EDC3	100	97.835	Cercocebus_atys
ENSSSCG00000001903	EDC3	100	94.882	ENSCLAG00000005700	EDC3	100	94.882	Chinchilla_lanigera
ENSSSCG00000001903	EDC3	100	97.835	ENSCSAG00000014239	EDC3	100	97.835	Chlorocebus_sabaeus
ENSSSCG00000001903	EDC3	100	88.583	ENSCPBG00000024239	EDC3	100	88.583	Chrysemys_picta_bellii
ENSSSCG00000001903	EDC3	100	37.795	ENSCING00000022142	-	99	37.795	Ciona_intestinalis
ENSSSCG00000001903	EDC3	100	97.835	ENSCANG00000028699	EDC3	100	97.835	Colobus_angolensis_palliatus
ENSSSCG00000001903	EDC3	100	96.457	ENSCGRG00001013874	Edc3	100	96.457	Cricetulus_griseus_chok1gshd
ENSSSCG00000001903	EDC3	100	96.457	ENSCGRG00000011885	Edc3	100	96.457	Cricetulus_griseus_crigri
ENSSSCG00000001903	EDC3	99	71.399	ENSCSEG00000012996	edc3	99	71.399	Cynoglossus_semilaevis
ENSSSCG00000001903	EDC3	100	72.327	ENSCVAG00000008023	edc3	100	72.327	Cyprinodon_variegatus
ENSSSCG00000001903	EDC3	99	68.627	ENSDARG00000051931	edc3	99	68.555	Danio_rerio
ENSSSCG00000001903	EDC3	100	85.659	ENSDNOG00000030661	EDC3	100	85.659	Dasypus_novemcinctus
ENSSSCG00000001903	EDC3	70	98.148	ENSETEG00000002398	-	64	98.148	Echinops_telfairi
ENSSSCG00000001903	EDC3	100	97.835	ENSEASG00005005071	EDC3	100	97.835	Equus_asinus_asinus
ENSSSCG00000001903	EDC3	100	97.835	ENSECAG00000017994	EDC3	100	97.835	Equus_caballus
ENSSSCG00000001903	EDC3	100	64.826	ENSELUG00000007607	EDC3	100	64.826	Esox_lucius
ENSSSCG00000001903	EDC3	100	68.323	ENSELUG00000005794	edc3	100	68.116	Esox_lucius
ENSSSCG00000001903	EDC3	100	96.260	ENSFCAG00000002014	EDC3	100	96.260	Felis_catus
ENSSSCG00000001903	EDC3	98	84.369	ENSFALG00000004543	EDC3	96	84.369	Ficedula_albicollis
ENSSSCG00000001903	EDC3	100	94.685	ENSFDAG00000012582	EDC3	100	94.685	Fukomys_damarensis
ENSSSCG00000001903	EDC3	100	72.385	ENSFHEG00000009375	edc3	100	72.385	Fundulus_heteroclitus
ENSSSCG00000001903	EDC3	100	70.270	ENSGMOG00000002715	edc3	100	70.270	Gadus_morhua
ENSSSCG00000001903	EDC3	100	88.583	ENSGALG00000040181	EDC3	100	88.583	Gallus_gallus
ENSSSCG00000001903	EDC3	100	70.921	ENSGAFG00000014433	edc3	100	70.921	Gambusia_affinis
ENSSSCG00000001903	EDC3	88	70.149	ENSGACG00000014671	EDC3	99	56.893	Gasterosteus_aculeatus
ENSSSCG00000001903	EDC3	100	71.816	ENSGACG00000009783	edc3	100	71.816	Gasterosteus_aculeatus
ENSSSCG00000001903	EDC3	100	88.189	ENSGAGG00000023477	EDC3	100	88.189	Gopherus_agassizii
ENSSSCG00000001903	EDC3	100	97.638	ENSGGOG00000003552	EDC3	100	97.638	Gorilla_gorilla
ENSSSCG00000001903	EDC3	100	70.208	ENSHBUG00000003635	edc3	100	70.208	Haplochromis_burtoni
ENSSSCG00000001903	EDC3	99	63.136	ENSHBUG00000020817	EDC3	99	63.136	Haplochromis_burtoni
ENSSSCG00000001903	EDC3	100	70.782	ENSHCOG00000016834	edc3	100	70.782	Hippocampus_comes
ENSSSCG00000001903	EDC3	99	70.059	ENSIPUG00000005695	edc3	100	70.059	Ictalurus_punctatus
ENSSSCG00000001903	EDC3	100	97.835	ENSSTOG00000013936	EDC3	100	97.835	Ictidomys_tridecemlineatus
ENSSSCG00000001903	EDC3	100	95.669	ENSJJAG00000008074	Edc3	100	95.669	Jaculus_jaculus
ENSSSCG00000001903	EDC3	100	71.074	ENSKMAG00000001243	edc3	100	71.608	Kryptolebias_marmoratus
ENSSSCG00000001903	EDC3	100	59.158	ENSKMAG00000001987	EDC3	100	59.158	Kryptolebias_marmoratus
ENSSSCG00000001903	EDC3	100	61.191	ENSLBEG00000017984	EDC3	100	61.191	Labrus_bergylta
ENSSSCG00000001903	EDC3	100	71.967	ENSLBEG00000013435	edc3	99	71.967	Labrus_bergylta
ENSSSCG00000001903	EDC3	100	77.282	ENSLACG00000014149	EDC3	100	77.282	Latimeria_chalumnae
ENSSSCG00000001903	EDC3	99	67.611	ENSLOCG00000014625	edc3	99	68.219	Lepisosteus_oculatus
ENSSSCG00000001903	EDC3	100	95.472	ENSLAFG00000002992	EDC3	100	95.472	Loxodonta_africana
ENSSSCG00000001903	EDC3	100	97.638	ENSMFAG00000043074	EDC3	100	97.638	Macaca_fascicularis
ENSSSCG00000001903	EDC3	100	97.638	ENSMMUG00000011071	EDC3	100	97.638	Macaca_mulatta
ENSSSCG00000001903	EDC3	100	97.638	ENSMNEG00000035316	EDC3	100	97.638	Macaca_nemestrina
ENSSSCG00000001903	EDC3	100	97.835	ENSMLEG00000030372	EDC3	100	97.835	Mandrillus_leucophaeus
ENSSSCG00000001903	EDC3	100	72.176	ENSMAMG00000000505	edc3	100	72.176	Mastacembelus_armatus
ENSSSCG00000001903	EDC3	99	61.426	ENSMAMG00000005423	-	99	61.426	Mastacembelus_armatus
ENSSSCG00000001903	EDC3	100	70.208	ENSMZEG00005004892	edc3	100	70.208	Maylandia_zebra
ENSSSCG00000001903	EDC3	99	62.083	ENSMZEG00005005654	EDC3	99	62.083	Maylandia_zebra
ENSSSCG00000001903	EDC3	100	87.598	ENSMGAG00000002617	EDC3	100	87.598	Meleagris_gallopavo
ENSSSCG00000001903	EDC3	100	96.850	ENSMICG00000043190	EDC3	100	96.850	Microcebus_murinus
ENSSSCG00000001903	EDC3	100	96.457	ENSMOCG00000016205	Edc3	100	96.457	Microtus_ochrogaster
ENSSSCG00000001903	EDC3	99	72.117	ENSMMOG00000012278	edc3	99	72.117	Mola_mola
ENSSSCG00000001903	EDC3	100	92.323	ENSMODG00000009442	EDC3	100	92.323	Monodelphis_domestica
ENSSSCG00000001903	EDC3	100	71.340	ENSMALG00000008658	edc3	100	71.340	Monopterus_albus
ENSSSCG00000001903	EDC3	100	96.260	MGP_CAROLIEiJ_G0032280	Edc3	100	98.462	Mus_caroli
ENSSSCG00000001903	EDC3	100	95.866	ENSMUSG00000038957	Edc3	100	98.462	Mus_musculus
ENSSSCG00000001903	EDC3	100	96.063	MGP_PahariEiJ_G0015146	Edc3	100	98.462	Mus_pahari
ENSSSCG00000001903	EDC3	100	95.669	MGP_SPRETEiJ_G0033420	Edc3	100	98.462	Mus_spretus
ENSSSCG00000001903	EDC3	100	96.063	ENSMPUG00000017293	EDC3	100	96.063	Mustela_putorius_furo
ENSSSCG00000001903	EDC3	100	96.667	ENSMLUG00000016382	EDC3	100	96.667	Myotis_lucifugus
ENSSSCG00000001903	EDC3	100	95.866	ENSNGAG00000010923	Edc3	100	95.866	Nannospalax_galili
ENSSSCG00000001903	EDC3	99	61.875	ENSNBRG00000007881	EDC3	99	61.875	Neolamprologus_brichardi
ENSSSCG00000001903	EDC3	100	70.417	ENSNBRG00000002434	edc3	100	70.417	Neolamprologus_brichardi
ENSSSCG00000001903	EDC3	100	87.992	ENSNLEG00000014577	EDC3	100	87.992	Nomascus_leucogenys
ENSSSCG00000001903	EDC3	100	91.142	ENSMEUG00000009077	EDC3	100	91.142	Notamacropus_eugenii
ENSSSCG00000001903	EDC3	86	96.296	ENSOPRG00000009540	-	79	96.296	Ochotona_princeps
ENSSSCG00000001903	EDC3	100	70.417	ENSONIG00000008434	edc3	100	70.417	Oreochromis_niloticus
ENSSSCG00000001903	EDC3	100	59.533	ENSONIG00000002932	-	100	59.533	Oreochromis_niloticus
ENSSSCG00000001903	EDC3	78	91.436	ENSOCUG00000017740	EDC3	86	91.436	Oryctolagus_cuniculus
ENSSSCG00000001903	EDC3	100	70.208	ENSORLG00000004883	edc3	100	70.208	Oryzias_latipes
ENSSSCG00000001903	EDC3	100	59.831	ENSORLG00000014399	-	98	59.831	Oryzias_latipes
ENSSSCG00000001903	EDC3	100	59.831	ENSORLG00020019446	-	100	59.831	Oryzias_latipes_hni
ENSSSCG00000001903	EDC3	100	70.417	ENSORLG00020012262	edc3	100	70.417	Oryzias_latipes_hni
ENSSSCG00000001903	EDC3	100	59.408	ENSORLG00015017635	-	96	59.408	Oryzias_latipes_hsok
ENSSSCG00000001903	EDC3	100	70.417	ENSORLG00015005634	edc3	100	70.417	Oryzias_latipes_hsok
ENSSSCG00000001903	EDC3	100	71.757	ENSOMEG00000014026	edc3	100	71.757	Oryzias_melastigma
ENSSSCG00000001903	EDC3	100	59.664	ENSOMEG00000017354	EDC3	100	59.664	Oryzias_melastigma
ENSSSCG00000001903	EDC3	100	96.850	ENSOGAG00000014441	EDC3	100	96.850	Otolemur_garnettii
ENSSSCG00000001903	EDC3	100	96.464	ENSOARG00000003476	EDC3	100	96.464	Ovis_aries
ENSSSCG00000001903	EDC3	100	97.638	ENSPPAG00000040143	EDC3	100	97.638	Pan_paniscus
ENSSSCG00000001903	EDC3	100	96.654	ENSPPRG00000006257	EDC3	100	96.654	Panthera_pardus
ENSSSCG00000001903	EDC3	100	96.654	ENSPTIG00000017424	EDC3	100	96.654	Panthera_tigris_altaica
ENSSSCG00000001903	EDC3	100	97.638	ENSPTRG00000007279	EDC3	100	97.638	Pan_troglodytes
ENSSSCG00000001903	EDC3	100	97.835	ENSPANG00000015997	EDC3	100	97.835	Papio_anubis
ENSSSCG00000001903	EDC3	100	67.343	ENSPKIG00000019810	EDC3	100	67.343	Paramormyrops_kingsleyae
ENSSSCG00000001903	EDC3	100	68.359	ENSPKIG00000004416	edc3	100	69.336	Paramormyrops_kingsleyae
ENSSSCG00000001903	EDC3	100	82.874	ENSPSIG00000008474	EDC3	100	82.874	Pelodiscus_sinensis
ENSSSCG00000001903	EDC3	100	69.583	ENSPMGG00000007223	edc3	100	69.583	Periophthalmus_magnuspinnatus
ENSSSCG00000001903	EDC3	100	95.866	ENSPEMG00000015260	Edc3	100	95.866	Peromyscus_maniculatus_bairdii
ENSSSCG00000001903	EDC3	100	89.961	ENSPCIG00000006276	EDC3	70	90.138	Phascolarctos_cinereus
ENSSSCG00000001903	EDC3	100	71.967	ENSPFOG00000012204	edc3	100	71.967	Poecilia_formosa
ENSSSCG00000001903	EDC3	100	71.967	ENSPLAG00000014420	edc3	100	71.967	Poecilia_latipinna
ENSSSCG00000001903	EDC3	100	71.967	ENSPMEG00000023289	edc3	100	71.967	Poecilia_mexicana
ENSSSCG00000001903	EDC3	100	71.967	ENSPREG00000016022	edc3	100	71.967	Poecilia_reticulata
ENSSSCG00000001903	EDC3	100	96.457	ENSPPYG00000006642	EDC3	100	96.457	Pongo_abelii
ENSSSCG00000001903	EDC3	92	100.000	ENSPCAG00000002802	EDC3	88	100.000	Procavia_capensis
ENSSSCG00000001903	EDC3	100	97.441	ENSPCOG00000013364	EDC3	100	97.441	Propithecus_coquereli
ENSSSCG00000001903	EDC3	100	96.457	ENSPVAG00000014733	EDC3	100	96.457	Pteropus_vampyrus
ENSSSCG00000001903	EDC3	100	70.208	ENSPNYG00000021797	edc3	100	70.208	Pundamilia_nyererei
ENSSSCG00000001903	EDC3	99	63.136	ENSPNYG00000009669	EDC3	99	63.136	Pundamilia_nyererei
ENSSSCG00000001903	EDC3	100	70.039	ENSPNAG00000019657	edc3	100	70.039	Pygocentrus_nattereri
ENSSSCG00000001903	EDC3	99	96.238	ENSRNOG00000019579	Edc3	99	96.238	Rattus_norvegicus
ENSSSCG00000001903	EDC3	100	97.441	ENSRBIG00000019488	EDC3	100	97.441	Rhinopithecus_bieti
ENSSSCG00000001903	EDC3	100	97.441	ENSRROG00000034959	EDC3	100	97.441	Rhinopithecus_roxellana
ENSSSCG00000001903	EDC3	100	97.835	ENSSBOG00000004896	EDC3	100	97.835	Saimiri_boliviensis_boliviensis
ENSSSCG00000001903	EDC3	96	91.207	ENSSHAG00000015075	EDC3	95	91.207	Sarcophilus_harrisii
ENSSSCG00000001903	EDC3	100	69.980	ENSSFOG00015016939	edc3	100	70.428	Scleropages_formosus
ENSSSCG00000001903	EDC3	100	69.767	ENSSFOG00015002439	edc3	100	69.979	Scleropages_formosus
ENSSSCG00000001903	EDC3	99	60.960	ENSSMAG00000010176	-	99	60.960	Scophthalmus_maximus
ENSSSCG00000001903	EDC3	100	71.548	ENSSMAG00000010695	edc3	100	71.548	Scophthalmus_maximus
ENSSSCG00000001903	EDC3	100	63.542	ENSSDUG00000007671	EDC3	100	63.542	Seriola_dumerili
ENSSSCG00000001903	EDC3	100	71.757	ENSSDUG00000021844	edc3	100	71.757	Seriola_dumerili
ENSSSCG00000001903	EDC3	100	71.757	ENSSLDG00000022046	edc3	100	71.757	Seriola_lalandi_dorsalis
ENSSSCG00000001903	EDC3	83	96.371	ENSSARG00000003907	EDC3	80	96.371	Sorex_araneus
ENSSSCG00000001903	EDC3	100	88.189	ENSSPUG00000008232	EDC3	100	88.189	Sphenodon_punctatus
ENSSSCG00000001903	EDC3	100	72.500	ENSSPAG00000010009	edc3	100	72.500	Stegastes_partitus
ENSSSCG00000001903	EDC3	100	61.603	ENSSPAG00000020327	EDC3	100	61.603	Stegastes_partitus
ENSSSCG00000001903	EDC3	100	87.992	ENSTGUG00000004007	EDC3	100	87.992	Taeniopygia_guttata
ENSSSCG00000001903	EDC3	100	72.292	ENSTRUG00000017078	edc3	100	72.292	Takifugu_rubripes
ENSSSCG00000001903	EDC3	100	71.369	ENSTNIG00000016047	edc3	100	71.369	Tetraodon_nigroviridis
ENSSSCG00000001903	EDC3	100	97.047	ENSTTRG00000007990	EDC3	100	97.047	Tursiops_truncatus
ENSSSCG00000001903	EDC3	100	96.850	ENSUAMG00000026710	-	100	96.850	Ursus_americanus
ENSSSCG00000001903	EDC3	100	96.850	ENSUMAG00000005006	EDC3	96	96.850	Ursus_maritimus
ENSSSCG00000001903	EDC3	86	87.037	ENSVPAG00000003499	-	79	87.037	Vicugna_pacos
ENSSSCG00000001903	EDC3	100	97.047	ENSVVUG00000018601	EDC3	100	97.047	Vulpes_vulpes
ENSSSCG00000001903	EDC3	74	81.609	ENSXETG00000010622	edc3	99	82.759	Xenopus_tropicalis
ENSSSCG00000001903	EDC3	100	71.074	ENSXMAG00000007377	edc3	100	71.074	Xiphophorus_maculatus