EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSSCG00000002023 (Gene tree)
Gene ID
100155260
Gene Symbol
PABPN1
Alias
-
Full Name
poly(A) binding protein nuclear 1
Gene Type
protein_coding
Species
Sus_scrofa
Status
putative
Strand
Minus strand
Length
20394 bases
Position
chr7:75750330-75770723
Accession
100155260
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSSCP00000002211RRM_1PF00076.221.2e-1411
ENSSSCP00000047125RRM_1PF00076.221.2e-1411
ENSSSCP00000047220RRM_1PF00076.221.4e-1411
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSSCT00000046034-3559XM_001928880ENSSSCP00000048119193 (aa)XP_001928915A0A287AW74
ENSSSCT00000053778-3417-ENSSSCP00000047220333 (aa)-A0A287ATE4
ENSSSCT00000064723-1707-ENSSSCP00000047125306 (aa)-A0A287ASR3
ENSSSCT00000002263-915-ENSSSCP00000002211304 (aa)-F2Z5L8
Gene Model
Click here to download ENSSSCG00000002023's gene model file
Pathways
Pathway IDPathway NameSource
ssc03015mRNA surveillance pathwayKEGG
ssc05164Influenza AKEGG
ssc05206MicroRNAs in cancerKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000002023's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSSCG00000002023PABPN15855.114ENSSSCG00000038472-9154.491
ENSSSCG00000002023PABPN16443.216ENSSSCG00000036367PABPN1L7449.754
ENSSSCG00000002023PABPN17373.543ENSSSCG00000034805-7669.118
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSSCG00000002023PABPN110099.399ENSG00000258643BCL2L2-PABPN110099.399Homo_sapiens
ENSSSCG00000002023PABPN1100100.000ENSG00000100836PABPN1100100.000Homo_sapiens
ENSSSCG00000002023PABPN18670.455ENSAPOG00000016425pabpn19972.103Acanthochromis_polyacanthus
ENSSSCG00000002023PABPN162100.000ENSAMEG00000007048BCL2L2-PABPN1100100.000Ailuropoda_melanoleuca
ENSSSCG00000002023PABPN18567.300ENSACIG00000021744pabpn19482.143Amphilophus_citrinellus
ENSSSCG00000002023PABPN18670.455ENSAOCG00000015805pabpn19972.103Amphiprion_ocellaris
ENSSSCG00000002023PABPN18670.455ENSAPEG00000009623pabpn19972.103Amphiprion_percula
ENSSSCG00000002023PABPN18670.833ENSATEG00000020531pabpn19972.532Anabas_testudineus
ENSSSCG00000002023PABPN16688.670ENSACAG00000006185-7487.560Anolis_carolinensis
ENSSSCG00000002023PABPN110095.954ENSANAG00000024513-10095.954Aotus_nancymaae
ENSSSCG00000002023PABPN18567.045ENSACLG00000016374pabpn17670.996Astatotilapia_calliptera
ENSSSCG00000002023PABPN18671.591ENSAMXG00000000452pabpn19483.929Astyanax_mexicanus
ENSSSCG00000002023PABPN19276.868ENSBTAG00000053753-7198.429Bos_taurus
ENSSSCG00000002023PABPN19275.177ENSBTAG00000050594-8987.255Bos_taurus
ENSSSCG00000002023PABPN110099.346ENSBTAG00000006884PABPN110099.346Bos_taurus
ENSSSCG00000002023PABPN15898.315ENSCJAG00000004407-8998.315Callithrix_jacchus
ENSSSCG00000002023PABPN1100100.000ENSCJAG00000007960-100100.000Callithrix_jacchus
ENSSSCG00000002023PABPN110097.059ENSCAFG00000011482PABPN110097.059Canis_familiaris
ENSSSCG00000002023PABPN1100100.000ENSCAFG00020007298-100100.000Canis_lupus_dingo
ENSSSCG00000002023PABPN1100100.000ENSCAFG00020006651-100100.000Canis_lupus_dingo
ENSSSCG00000002023PABPN110099.673ENSCHIG00000012184PABPN110099.673Capra_hircus
ENSSSCG00000002023PABPN110099.700ENSTSYG00000033996BCL2L2-PABPN1100100.000Carlito_syrichta
ENSSSCG00000002023PABPN110098.366ENSCPOG00000025574PABPN110098.366Cavia_porcellus
ENSSSCG00000002023PABPN1100100.000ENSCCAG00000033954BCL2L2-PABPN1100100.000Cebus_capucinus
ENSSSCG00000002023PABPN1100100.000ENSCATG00000038536BCL2L2-PABPN1100100.000Cercocebus_atys
ENSSSCG00000002023PABPN16780.000ENSCLAG00000012423PABPN15798.026Chinchilla_lanigera
ENSSSCG00000002023PABPN110098.366ENSCSAG00000016036PABPN110098.366Chlorocebus_sabaeus
ENSSSCG00000002023PABPN16788.293ENSCHOG00000004798BCL2L2-PABPN18888.293Choloepus_hoffmanni
ENSSSCG00000002023PABPN15592.814ENSCPBG00000026060-9492.814Chrysemys_picta_bellii
ENSSSCG00000002023PABPN16562.687ENSCING00000012468-8465.174Ciona_intestinalis
ENSSSCG00000002023PABPN15860.674ENSCSAVG00000002001-9362.275Ciona_savignyi
ENSSSCG00000002023PABPN19682.712ENSCANG00000030980-7483.902Colobus_angolensis_palliatus
ENSSSCG00000002023PABPN110099.700ENSCANG00000009750BCL2L2-PABPN1100100.000Colobus_angolensis_palliatus
ENSSSCG00000002023PABPN110097.386ENSCGRG00001019696Pabpn110099.438Cricetulus_griseus_chok1gshd
ENSSSCG00000002023PABPN15899.438ENSCGRG00000011102Pabpn110099.438Cricetulus_griseus_crigri
ENSSSCG00000002023PABPN18670.076ENSCSEG00000008774pabpn18980.476Cynoglossus_semilaevis
ENSSSCG00000002023PABPN18667.803ENSCVAG00000003152pabpn19971.245Cyprinodon_variegatus
ENSSSCG00000002023PABPN18270.518ENSDARG00000045373pabpn19973.391Danio_rerio
ENSSSCG00000002023PABPN1100100.000ENSDNOG00000023682PABPN1100100.000Dasypus_novemcinctus
ENSSSCG00000002023PABPN110098.693ENSDORG00000028966-10098.693Dipodomys_ordii
ENSSSCG00000002023PABPN16263.351FBgn0005648Pabp28959.420Drosophila_melanogaster
ENSSSCG00000002023PABPN16379.487ENSEBUG00000002322pabpn18379.897Eptatretus_burgeri
ENSSSCG00000002023PABPN1100100.000ENSEASG00005011716PABPN1100100.000Equus_asinus_asinus
ENSSSCG00000002023PABPN199100.000ENSECAG00000011652PABPN199100.000Equus_caballus
ENSSSCG00000002023PABPN19391.197ENSEEUG00000012973-7293.365Erinaceus_europaeus
ENSSSCG00000002023PABPN18673.485ENSELUG00000022654pabpn18585.437Esox_lucius
ENSSSCG00000002023PABPN1100100.000ENSFCAG00000031922PABPN1100100.000Felis_catus
ENSSSCG00000002023PABPN15898.876ENSFDAG00000018381BCL2L2-PABPN110098.876Fukomys_damarensis
ENSSSCG00000002023PABPN18666.288ENSFHEG00000007215pabpn19970.386Fundulus_heteroclitus
ENSSSCG00000002023PABPN18370.356ENSGMOG00000003922pabpn16683.505Gadus_morhua
ENSSSCG00000002023PABPN16389.796ENSGALG00000052930-7973.432Gallus_gallus
ENSSSCG00000002023PABPN18670.189ENSGAFG00000017099pabpn19972.222Gambusia_affinis
ENSSSCG00000002023PABPN18667.754ENSGACG00000002167pabpn19969.796Gasterosteus_aculeatus
ENSSSCG00000002023PABPN19382.168ENSGGOG00000025919-9884.459Gorilla_gorilla
ENSSSCG00000002023PABPN19278.014ENSGGOG00000039675-7284.536Gorilla_gorilla
ENSSSCG00000002023PABPN1100100.000ENSGGOG00000022683-100100.000Gorilla_gorilla
ENSSSCG00000002023PABPN18670.833ENSHBUG00000019523pabpn19972.532Haplochromis_burtoni
ENSSSCG00000002023PABPN19274.733ENSHGLG00000018588-7181.429Heterocephalus_glaber_female
ENSSSCG00000002023PABPN15576.048ENSHGLG00000009842-9376.048Heterocephalus_glaber_female
ENSSSCG00000002023PABPN110098.366ENSHGLG00000002927-10098.366Heterocephalus_glaber_female
ENSSSCG00000002023PABPN19699.377ENSHGLG00100006673-10099.438Heterocephalus_glaber_male
ENSSSCG00000002023PABPN19269.643ENSHGLG00100015565-7281.429Heterocephalus_glaber_male
ENSSSCG00000002023PABPN15588.304ENSHGLG00100018935-9488.304Heterocephalus_glaber_male
ENSSSCG00000002023PABPN18667.300ENSHCOG00000004655pabpn19971.674Hippocampus_comes
ENSSSCG00000002023PABPN18671.212ENSIPUG00000008085PABPN19972.961Ictalurus_punctatus
ENSSSCG00000002023PABPN18667.045ENSIPUG00000000180-8681.313Ictalurus_punctatus
ENSSSCG00000002023PABPN158100.000ENSSTOG00000029847BCL2L2-PABPN1100100.000Ictidomys_tridecemlineatus
ENSSSCG00000002023PABPN158100.000ENSJJAG00000023507Gm20521100100.000Jaculus_jaculus
ENSSSCG00000002023PABPN16881.429ENSKMAG00000018748pabpn18681.643Kryptolebias_marmoratus
ENSSSCG00000002023PABPN18670.833ENSLBEG00000027266pabpn19972.532Labrus_bergylta
ENSSSCG00000002023PABPN15887.640ENSLACG00000000646pabpn17890.449Latimeria_chalumnae
ENSSSCG00000002023PABPN18271.032ENSLOCG00000000796pabpn16984.021Lepisosteus_oculatus
ENSSSCG00000002023PABPN16865.238ENSLOCG00000004694pabpn1l9565.700Lepisosteus_oculatus
ENSSSCG00000002023PABPN110099.700ENSMFAG00000032183BCL2L2-PABPN1100100.000Macaca_fascicularis
ENSSSCG00000002023PABPN110099.700ENSMMUG00000014747BCL2L2-PABPN1100100.000Macaca_mulatta
ENSSSCG00000002023PABPN19778.595ENSMMUG00000048382-6883.333Macaca_mulatta
ENSSSCG00000002023PABPN1100100.000ENSMNEG00000045065BCL2L2-PABPN1100100.000Macaca_nemestrina
ENSSSCG00000002023PABPN17482.796ENSMNEG00000035750-9992.908Macaca_nemestrina
ENSSSCG00000002023PABPN19774.324ENSMLEG00000034623-9990.780Mandrillus_leucophaeus
ENSSSCG00000002023PABPN110099.700ENSMLEG00000043862BCL2L2-PABPN1100100.000Mandrillus_leucophaeus
ENSSSCG00000002023PABPN18570.881ENSMAMG00000007979pabpn16882.266Mastacembelus_armatus
ENSSSCG00000002023PABPN18270.238ENSMZEG00005011904pabpn16682.474Maylandia_zebra
ENSSSCG00000002023PABPN110099.399ENSMAUG00000007383Gm2052110099.399Mesocricetus_auratus
ENSSSCG00000002023PABPN110099.700ENSMICG00000010002BCL2L2-PABPN110099.700Microcebus_murinus
ENSSSCG00000002023PABPN110098.799ENSMOCG00000018557Gm2052110098.799Microtus_ochrogaster
ENSSSCG00000002023PABPN18671.212ENSMMOG00000005405pabpn19972.961Mola_mola
ENSSSCG00000002023PABPN110097.039ENSMODG00000004535-10097.039Monodelphis_domestica
ENSSSCG00000002023PABPN18570.498ENSMALG00000019612pabpn16782.266Monopterus_albus
ENSSSCG00000002023PABPN110096.405MGP_CAROLIEiJ_G0019277Pabpn110097.753Mus_caroli
ENSSSCG00000002023PABPN110097.898MGP_CAROLIEiJ_G0019276Gm2052110097.898Mus_caroli
ENSSSCG00000002023PABPN110096.732ENSMUSG00000022194Pabpn110098.315Mus_musculus
ENSSSCG00000002023PABPN110098.198ENSMUSG00000092232Gm2052110098.198Mus_musculus
ENSSSCG00000002023PABPN110096.732MGP_PahariEiJ_G0030295Pabpn110098.315Mus_pahari
ENSSSCG00000002023PABPN110098.198MGP_PahariEiJ_G0030294Gm2052110098.198Mus_pahari
ENSSSCG00000002023PABPN110098.198MGP_SPRETEiJ_G0020165Gm2052110098.198Mus_spretus
ENSSSCG00000002023PABPN110096.732MGP_SPRETEiJ_G0020166Pabpn110098.315Mus_spretus
ENSSSCG00000002023PABPN155100.000ENSMPUG00000006775-99100.000Mustela_putorius_furo
ENSSSCG00000002023PABPN19289.085ENSMLUG00000012452-7092.958Myotis_lucifugus
ENSSSCG00000002023PABPN16297.884ENSMLUG00000003800-10097.884Myotis_lucifugus
ENSSSCG00000002023PABPN19578.966ENSMLUG00000028677-7594.634Myotis_lucifugus
ENSSSCG00000002023PABPN110099.700ENSNGAG00000019529Gm2052110099.700Nannospalax_galili
ENSSSCG00000002023PABPN18270.238ENSNBRG00000023955pabpn19482.143Neolamprologus_brichardi
ENSSSCG00000002023PABPN19776.510ENSNLEG00000030598-7981.991Nomascus_leucogenys
ENSSSCG00000002023PABPN110099.700ENSNLEG00000015007-10099.700Nomascus_leucogenys
ENSSSCG00000002023PABPN15887.079ENSODEG00000011555-8986.826Octodon_degus
ENSSSCG00000002023PABPN110099.399ENSODEG00000002083BCL2L2-PABPN110099.399Octodon_degus
ENSSSCG00000002023PABPN19282.206ENSODEG00000003739-7586.425Octodon_degus
ENSSSCG00000002023PABPN18270.238ENSONIG00000008112pabpn16682.474Oreochromis_niloticus
ENSSSCG00000002023PABPN19996.711ENSOCUG00000016174PABPN110096.711Oryctolagus_cuniculus
ENSSSCG00000002023PABPN16782.524ENSORLG00000027900pabpn18479.902Oryzias_latipes
ENSSSCG00000002023PABPN16782.524ENSORLG00020004681pabpn16782.759Oryzias_latipes_hni
ENSSSCG00000002023PABPN16882.775ENSORLG00015000018pabpn18683.010Oryzias_latipes_hsok
ENSSSCG00000002023PABPN16879.227ENSOMEG00000016618pabpn16982.653Oryzias_melastigma
ENSSSCG00000002023PABPN1100100.000ENSOGAG00000008710PABPN1100100.000Otolemur_garnettii
ENSSSCG00000002023PABPN110099.700ENSOARG00000019336BCL2L2-PABPN19299.700Ovis_aries
ENSSSCG00000002023PABPN110099.700ENSPPAG00000028984BCL2L2-PABPN110099.700Pan_paniscus
ENSSSCG00000002023PABPN15583.234ENSPPAG00000039421-9383.234Pan_paniscus
ENSSSCG00000002023PABPN1100100.000ENSPPRG00000010567PABPN1100100.000Panthera_pardus
ENSSSCG00000002023PABPN158100.000ENSPTIG00000001063BCL2L2-PABPN1100100.000Panthera_tigris_altaica
ENSSSCG00000002023PABPN1100100.000ENSPTRG00000006167BCL2L2100100.000Pan_troglodytes
ENSSSCG00000002023PABPN19272.695ENSPTRG00000047273-9066.548Pan_troglodytes
ENSSSCG00000002023PABPN1100100.000ENSPANG00000021100BCL2L2-PABPN1100100.000Papio_anubis
ENSSSCG00000002023PABPN19779.054ENSPANG00000023326-9992.908Papio_anubis
ENSSSCG00000002023PABPN16881.818ENSPKIG00000018052pabpn18682.524Paramormyrops_kingsleyae
ENSSSCG00000002023PABPN16285.789ENSPKIG00000008144-7773.478Paramormyrops_kingsleyae
ENSSSCG00000002023PABPN16463.131ENSPKIG00000008340pabpn1l9263.131Paramormyrops_kingsleyae
ENSSSCG00000002023PABPN18269.444ENSPMGG00000022027pabpn18071.493Periophthalmus_magnuspinnatus
ENSSSCG00000002023PABPN110099.099ENSPEMG00000008332Gm2052110099.099Peromyscus_maniculatus_bairdii
ENSSSCG00000002023PABPN15477.778ENSPMAG00000006212pabpn18476.355Petromyzon_marinus
ENSSSCG00000002023PABPN110096.732ENSPCIG00000027751-10096.732Phascolarctos_cinereus
ENSSSCG00000002023PABPN18667.547ENSPFOG00000010351pabpn19970.588Poecilia_formosa
ENSSSCG00000002023PABPN18669.202ENSPLAG00000022696pabpn16881.373Poecilia_latipinna
ENSSSCG00000002023PABPN18667.547ENSPMEG00000020856pabpn19971.368Poecilia_mexicana
ENSSSCG00000002023PABPN18667.925ENSPREG00000011278pabpn19971.368Poecilia_reticulata
ENSSSCG00000002023PABPN19794.218ENSPPYG00000005663PABPN19994.218Pongo_abelii
ENSSSCG00000002023PABPN16985.308ENSPCAG00000005902PABPN17285.308Procavia_capensis
ENSSSCG00000002023PABPN110099.673ENSPCOG00000028047BCL2L2-PABPN110099.673Propithecus_coquereli
ENSSSCG00000002023PABPN110097.059ENSPVAG00000005270PABPN110097.059Pteropus_vampyrus
ENSSSCG00000002023PABPN18670.833ENSPNYG00000013182pabpn19972.532Pundamilia_nyererei
ENSSSCG00000002023PABPN16562.500ENSPNAG00000021666pabpn1l9464.179Pygocentrus_nattereri
ENSSSCG00000002023PABPN18671.970ENSPNAG00000023526pabpn19973.820Pygocentrus_nattereri
ENSSSCG00000002023PABPN110097.059ENSRNOG00000042195Pabpn110097.059Rattus_norvegicus
ENSSSCG00000002023PABPN19783.784ENSRBIG00000039547-7585.366Rhinopithecus_bieti
ENSSSCG00000002023PABPN19285.357ENSRBIG00000042811-9086.636Rhinopithecus_bieti
ENSSSCG00000002023PABPN19699.688ENSRBIG00000040762BCL2L2-PABPN19999.688Rhinopithecus_bieti
ENSSSCG00000002023PABPN19699.377ENSRROG00000045535BCL2L2-PABPN1100100.000Rhinopithecus_roxellana
ENSSSCG00000002023PABPN19983.607ENSRROG00000040409-7585.854Rhinopithecus_roxellana
ENSSSCG00000002023PABPN19282.143ENSRROG00000036409-6782.949Rhinopithecus_roxellana
ENSSSCG00000002023PABPN110095.954ENSSBOG00000026930BCL2L2-PABPN199100.000Saimiri_boliviensis_boliviensis
ENSSSCG00000002023PABPN18765.660ENSSHAG00000007707-8974.408Sarcophilus_harrisii
ENSSSCG00000002023PABPN17187.156ENSSHAG00000014841-8797.354Sarcophilus_harrisii
ENSSSCG00000002023PABPN17177.828ENSSFOG00015012565pabpn19973.820Scleropages_formosus
ENSSSCG00000002023PABPN16860.096ENSSFOG00015015833pabpn1l8763.918Scleropages_formosus
ENSSSCG00000002023PABPN18670.076ENSSFOG00015014718pabpn19972.103Scleropages_formosus
ENSSSCG00000002023PABPN18670.833ENSSMAG00000020157pabpn19972.532Scophthalmus_maximus
ENSSSCG00000002023PABPN18570.498ENSSDUG00000020582pabpn16782.266Seriola_dumerili
ENSSSCG00000002023PABPN18670.833ENSSLDG00000007118pabpn19972.532Seriola_lalandi_dorsalis
ENSSSCG00000002023PABPN15591.617ENSSPUG00000018308-9491.617Sphenodon_punctatus
ENSSSCG00000002023PABPN18670.833ENSSPAG00000021658pabpn19972.532Stegastes_partitus
ENSSSCG00000002023PABPN18671.212ENSTRUG00000023664pabpn19972.961Takifugu_rubripes
ENSSSCG00000002023PABPN16780.583ENSTNIG00000005369pabpn19280.788Tetraodon_nigroviridis
ENSSSCG00000002023PABPN110099.346ENSUAMG00000024460PABPN110099.346Ursus_americanus
ENSSSCG00000002023PABPN110099.700ENSUMAG00000014288BCL2L2-PABPN110099.700Ursus_maritimus
ENSSSCG00000002023PABPN110099.700ENSVVUG00000019912BCL2L2-PABPN110099.700Vulpes_vulpes
ENSSSCG00000002023PABPN16490.306ENSXETG00000014597pabpn16692.893Xenopus_tropicalis
ENSSSCG00000002023PABPN15768.927ENSXCOG00000005158pabpn18981.579Xiphophorus_couchianus
ENSSSCG00000002023PABPN18668.302ENSXMAG00000006196pabpn19971.795Xiphophorus_maculatus

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