EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000002447 (Gene tree)
Gene ID: 106507753
Gene Symbol: CPSF2
Alias: CPSF100|KIAA1367
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 31790 bases
Position: chr7:113659452-113691241
Accession: 106507753
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000002648	Beta-Casp	PF10996.8	1.5e-20	1	1
ENSSSCP00000039497	Beta-Casp	PF10996.8	1.5e-20	1	1
ENSSSCP00000042294	Beta-Casp	PF10996.8	1.5e-20	1	1
ENSSSCP00000002648	Lactamase_B	PF00753.27	2.4e-06	1	1
ENSSSCP00000039497	Lactamase_B	PF00753.27	2.4e-06	1	1
ENSSSCP00000042294	Lactamase_B	PF00753.27	2.4e-06	1	1
ENSSSCP00000002648	RMMBL	PF07521.12	1.8e-15	1	1
ENSSSCP00000039497	RMMBL	PF07521.12	1.8e-15	1	1
ENSSSCP00000042294	RMMBL	PF07521.12	1.8e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000002717	CPSF2-201	4180	XM_021099625	ENSSSCP00000002648	782 (aa)	XP_020955284	F1SD85
ENSSSCT00000043192	CPSF2-203	4895	-	ENSSSCP00000042294	782 (aa)	-	F1SD85
ENSSSCT00000037118	CPSF2-202	4885	-	ENSSSCP00000039497	782 (aa)	-	F1SD85

Gene Model

Click here to download ENSSSCG00000002447's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000002447's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000002447	CPSF2	100	99.488	ENSG00000165934	CPSF2	100	100.000	Homo_sapiens
ENSSSCG00000002447	CPSF2	100	85.805	ENSAPOG00000001242	cpsf2	100	85.805	Acanthochromis_polyacanthus
ENSSSCG00000002447	CPSF2	100	86.076	ENSACIG00000009331	cpsf2	100	86.076	Amphilophus_citrinellus
ENSSSCG00000002447	CPSF2	100	85.805	ENSAOCG00000014095	cpsf2	100	85.805	Amphiprion_ocellaris
ENSSSCG00000002447	CPSF2	100	85.805	ENSAPEG00000009158	cpsf2	100	85.805	Amphiprion_percula
ENSSSCG00000002447	CPSF2	96	86.184	ENSATEG00000017644	cpsf2	100	84.307	Anabas_testudineus
ENSSSCG00000002447	CPSF2	100	96.051	ENSAPLG00000006330	CPSF2	100	96.051	Anas_platyrhynchos
ENSSSCG00000002447	CPSF2	100	95.019	ENSACAG00000009245	CPSF2	100	95.019	Anolis_carolinensis
ENSSSCG00000002447	CPSF2	100	99.488	ENSANAG00000022915	CPSF2	100	99.488	Aotus_nancymaae
ENSSSCG00000002447	CPSF2	100	85.642	ENSAMXG00000018696	cpsf2	100	85.642	Astyanax_mexicanus
ENSSSCG00000002447	CPSF2	100	99.488	ENSBTAG00000010227	CPSF2	100	99.488	Bos_taurus
ENSSSCG00000002447	CPSF2	100	41.452	WBGene00017313	cpsf-2	100	41.032	Caenorhabditis_elegans
ENSSSCG00000002447	CPSF2	100	99.488	ENSCJAG00000018069	CPSF2	100	99.488	Callithrix_jacchus
ENSSSCG00000002447	CPSF2	100	99.616	ENSCAFG00000010909	CPSF2	100	99.616	Canis_familiaris
ENSSSCG00000002447	CPSF2	100	99.616	ENSCAFG00020020670	CPSF2	100	99.616	Canis_lupus_dingo
ENSSSCG00000002447	CPSF2	100	99.488	ENSCHIG00000023848	CPSF2	100	99.488	Capra_hircus
ENSSSCG00000002447	CPSF2	100	98.338	ENSTSYG00000009036	CPSF2	100	98.338	Carlito_syrichta
ENSSSCG00000002447	CPSF2	100	99.744	ENSCPOG00000010899	CPSF2	100	99.744	Cavia_porcellus
ENSSSCG00000002447	CPSF2	100	99.488	ENSCCAG00000028088	CPSF2	100	99.488	Cebus_capucinus
ENSSSCG00000002447	CPSF2	100	99.616	ENSCATG00000030132	CPSF2	100	99.616	Cercocebus_atys
ENSSSCG00000002447	CPSF2	100	99.616	ENSCLAG00000012404	CPSF2	100	99.616	Chinchilla_lanigera
ENSSSCG00000002447	CPSF2	100	99.616	ENSCSAG00000011300	CPSF2	100	99.616	Chlorocebus_sabaeus
ENSSSCG00000002447	CPSF2	100	92.455	ENSCHOG00000012904	CPSF2	100	92.455	Choloepus_hoffmanni
ENSSSCG00000002447	CPSF2	100	96.424	ENSCPBG00000008766	CPSF2	97	96.424	Chrysemys_picta_bellii
ENSSSCG00000002447	CPSF2	100	54.806	ENSCING00000007881	-	100	54.432	Ciona_intestinalis
ENSSSCG00000002447	CPSF2	94	99.590	ENSCANG00000041651	CPSF2	100	99.590	Colobus_angolensis_palliatus
ENSSSCG00000002447	CPSF2	100	98.465	ENSCGRG00001006901	Cpsf2	100	98.465	Cricetulus_griseus_chok1gshd
ENSSSCG00000002447	CPSF2	100	98.465	ENSCGRG00000012416	Cpsf2	100	98.465	Cricetulus_griseus_crigri
ENSSSCG00000002447	CPSF2	100	83.777	ENSCSEG00000004116	cpsf2	100	83.777	Cynoglossus_semilaevis
ENSSSCG00000002447	CPSF2	100	85.044	ENSCVAG00000000095	cpsf2	100	85.171	Cyprinodon_variegatus
ENSSSCG00000002447	CPSF2	100	85.570	ENSDARG00000028971	cpsf2	100	85.570	Danio_rerio
ENSSSCG00000002447	CPSF2	100	99.488	ENSDNOG00000042757	CPSF2	100	99.488	Dasypus_novemcinctus
ENSSSCG00000002447	CPSF2	100	99.361	ENSDORG00000013709	Cpsf2	100	99.361	Dipodomys_ordii
ENSSSCG00000002447	CPSF2	100	54.047	FBgn0027873	Cpsf100	100	53.808	Drosophila_melanogaster
ENSSSCG00000002447	CPSF2	100	90.294	ENSETEG00000012123	CPSF2	100	90.294	Echinops_telfairi
ENSSSCG00000002447	CPSF2	52	76.225	ENSEBUG00000012098	cpsf2	93	76.225	Eptatretus_burgeri
ENSSSCG00000002447	CPSF2	91	97.270	ENSEASG00005021193	CPSF2	100	97.270	Equus_asinus_asinus
ENSSSCG00000002447	CPSF2	100	99.488	ENSECAG00000023935	CPSF2	100	99.488	Equus_caballus
ENSSSCG00000002447	CPSF2	100	83.940	ENSELUG00000008442	cpsf2	100	83.940	Esox_lucius
ENSSSCG00000002447	CPSF2	100	99.488	ENSFCAG00000007886	CPSF2	100	99.488	Felis_catus
ENSSSCG00000002447	CPSF2	100	96.296	ENSFALG00000002412	CPSF2	100	96.296	Ficedula_albicollis
ENSSSCG00000002447	CPSF2	100	99.616	ENSFDAG00000006327	CPSF2	100	99.616	Fukomys_damarensis
ENSSSCG00000002447	CPSF2	96	84.444	ENSFHEG00000015465	cpsf2	98	84.837	Fundulus_heteroclitus
ENSSSCG00000002447	CPSF2	100	83.460	ENSGMOG00000008761	cpsf2	100	83.460	Gadus_morhua
ENSSSCG00000002447	CPSF2	100	95.530	ENSGALG00000010783	CPSF2	100	96.041	Gallus_gallus
ENSSSCG00000002447	CPSF2	100	85.298	ENSGAFG00000001407	cpsf2	100	85.298	Gambusia_affinis
ENSSSCG00000002447	CPSF2	100	84.537	ENSGACG00000008418	cpsf2	100	84.537	Gasterosteus_aculeatus
ENSSSCG00000002447	CPSF2	100	96.552	ENSGAGG00000008287	CPSF2	100	96.552	Gopherus_agassizii
ENSSSCG00000002447	CPSF2	100	99.488	ENSGGOG00000011799	CPSF2	100	99.488	Gorilla_gorilla
ENSSSCG00000002447	CPSF2	100	85.044	ENSHBUG00000023466	cpsf2	100	85.044	Haplochromis_burtoni
ENSSSCG00000002447	CPSF2	100	99.488	ENSHGLG00000018311	CPSF2	100	99.488	Heterocephalus_glaber_female
ENSSSCG00000002447	CPSF2	100	99.488	ENSHGLG00100016460	CPSF2	100	99.488	Heterocephalus_glaber_male
ENSSSCG00000002447	CPSF2	100	84.411	ENSHCOG00000019527	cpsf2	98	84.411	Hippocampus_comes
ENSSSCG00000002447	CPSF2	100	85.642	ENSIPUG00000020857	cpsf2	100	85.642	Ictalurus_punctatus
ENSSSCG00000002447	CPSF2	100	99.616	ENSSTOG00000009528	CPSF2	100	99.616	Ictidomys_tridecemlineatus
ENSSSCG00000002447	CPSF2	100	99.488	ENSJJAG00000017925	Cpsf2	100	99.488	Jaculus_jaculus
ENSSSCG00000002447	CPSF2	100	84.537	ENSKMAG00000019429	cpsf2	100	84.537	Kryptolebias_marmoratus
ENSSSCG00000002447	CPSF2	95	84.070	ENSLBEG00000011585	cpsf2	100	84.225	Labrus_bergylta
ENSSSCG00000002447	CPSF2	100	89.655	ENSLACG00000019024	CPSF2	100	89.911	Latimeria_chalumnae
ENSSSCG00000002447	CPSF2	100	87.579	ENSLOCG00000014102	cpsf2	100	87.579	Lepisosteus_oculatus
ENSSSCG00000002447	CPSF2	100	99.235	ENSLAFG00000004891	CPSF2	100	99.235	Loxodonta_africana
ENSSSCG00000002447	CPSF2	100	99.616	ENSMFAG00000041212	CPSF2	100	99.616	Macaca_fascicularis
ENSSSCG00000002447	CPSF2	100	99.616	ENSMMUG00000000699	CPSF2	100	99.616	Macaca_mulatta
ENSSSCG00000002447	CPSF2	100	99.616	ENSMNEG00000031584	CPSF2	100	99.616	Macaca_nemestrina
ENSSSCG00000002447	CPSF2	100	99.616	ENSMLEG00000029394	CPSF2	100	99.616	Mandrillus_leucophaeus
ENSSSCG00000002447	CPSF2	100	85.678	ENSMAMG00000004235	cpsf2	100	85.678	Mastacembelus_armatus
ENSSSCG00000002447	CPSF2	100	85.171	ENSMZEG00005001769	cpsf2	100	85.171	Maylandia_zebra
ENSSSCG00000002447	CPSF2	100	95.536	ENSMGAG00000013122	CPSF2	100	96.046	Meleagris_gallopavo
ENSSSCG00000002447	CPSF2	100	98.465	ENSMAUG00000015160	Cpsf2	100	98.465	Mesocricetus_auratus
ENSSSCG00000002447	CPSF2	100	99.488	ENSMICG00000016441	CPSF2	100	99.488	Microcebus_murinus
ENSSSCG00000002447	CPSF2	100	98.465	ENSMOCG00000015372	Cpsf2	100	98.465	Microtus_ochrogaster
ENSSSCG00000002447	CPSF2	100	81.115	ENSMMOG00000015590	cpsf2	100	81.115	Mola_mola
ENSSSCG00000002447	CPSF2	100	98.849	ENSMODG00000002042	CPSF2	100	98.849	Monodelphis_domestica
ENSSSCG00000002447	CPSF2	100	82.510	ENSMALG00000022275	cpsf2	100	82.510	Monopterus_albus
ENSSSCG00000002447	CPSF2	100	97.954	ENSMUSG00000041781	Cpsf2	100	97.954	Mus_musculus
ENSSSCG00000002447	CPSF2	100	98.210	MGP_PahariEiJ_G0029791	Cpsf2	100	98.210	Mus_pahari
ENSSSCG00000002447	CPSF2	100	97.954	MGP_SPRETEiJ_G0018877	Cpsf2	100	97.954	Mus_spretus
ENSSSCG00000002447	CPSF2	100	99.616	ENSMPUG00000007617	CPSF2	98	99.616	Mustela_putorius_furo
ENSSSCG00000002447	CPSF2	100	98.849	ENSMLUG00000005570	CPSF2	100	98.849	Myotis_lucifugus
ENSSSCG00000002447	CPSF2	100	98.977	ENSNGAG00000020312	Cpsf2	100	98.977	Nannospalax_galili
ENSSSCG00000002447	CPSF2	100	85.551	ENSNBRG00000022402	cpsf2	100	85.551	Neolamprologus_brichardi
ENSSSCG00000002447	CPSF2	100	98.593	ENSNLEG00000017132	CPSF2	100	98.593	Nomascus_leucogenys
ENSSSCG00000002447	CPSF2	91	99.353	ENSMEUG00000008138	CPSF2	91	99.353	Notamacropus_eugenii
ENSSSCG00000002447	CPSF2	94	91.667	ENSOPRG00000008484	-	100	91.667	Ochotona_princeps
ENSSSCG00000002447	CPSF2	100	99.361	ENSODEG00000008682	CPSF2	100	99.361	Octodon_degus
ENSSSCG00000002447	CPSF2	100	85.932	ENSONIG00000005901	cpsf2	100	85.932	Oreochromis_niloticus
ENSSSCG00000002447	CPSF2	100	98.465	ENSOANG00000003822	CPSF2	100	98.465	Ornithorhynchus_anatinus
ENSSSCG00000002447	CPSF2	100	99.488	ENSOCUG00000005713	CPSF2	100	99.488	Oryctolagus_cuniculus
ENSSSCG00000002447	CPSF2	100	79.975	ENSORLG00000011628	cpsf2	100	79.975	Oryzias_latipes
ENSSSCG00000002447	CPSF2	100	84.791	ENSORLG00020016980	cpsf2	100	84.791	Oryzias_latipes_hni
ENSSSCG00000002447	CPSF2	100	84.791	ENSORLG00015011910	cpsf2	100	84.791	Oryzias_latipes_hsok
ENSSSCG00000002447	CPSF2	100	84.030	ENSOMEG00000022876	cpsf2	100	84.030	Oryzias_melastigma
ENSSSCG00000002447	CPSF2	100	96.429	ENSOARG00000012889	CPSF2	100	96.429	Ovis_aries
ENSSSCG00000002447	CPSF2	100	99.488	ENSPPAG00000039666	CPSF2	100	99.488	Pan_paniscus
ENSSSCG00000002447	CPSF2	99	99.488	ENSPPRG00000010869	CPSF2	100	99.488	Panthera_pardus
ENSSSCG00000002447	CPSF2	100	99.488	ENSPTIG00000021202	CPSF2	100	99.488	Panthera_tigris_altaica
ENSSSCG00000002447	CPSF2	100	99.488	ENSPTRG00000006651	CPSF2	100	99.488	Pan_troglodytes
ENSSSCG00000002447	CPSF2	100	99.616	ENSPANG00000017417	CPSF2	100	99.616	Papio_anubis
ENSSSCG00000002447	CPSF2	100	82.084	ENSPKIG00000021453	cpsf2	100	82.084	Paramormyrops_kingsleyae
ENSSSCG00000002447	CPSF2	100	95.913	ENSPSIG00000006289	CPSF2	100	95.913	Pelodiscus_sinensis
ENSSSCG00000002447	CPSF2	76	79.568	ENSPMGG00000002511	cpsf2	100	79.734	Periophthalmus_magnuspinnatus
ENSSSCG00000002447	CPSF2	100	98.721	ENSPEMG00000007917	Cpsf2	100	98.721	Peromyscus_maniculatus_bairdii
ENSSSCG00000002447	CPSF2	100	74.336	ENSPMAG00000006205	cpsf2	100	74.336	Petromyzon_marinus
ENSSSCG00000002447	CPSF2	100	98.849	ENSPCIG00000011393	CPSF2	100	98.849	Phascolarctos_cinereus
ENSSSCG00000002447	CPSF2	100	85.298	ENSPFOG00000018648	cpsf2	100	85.298	Poecilia_formosa
ENSSSCG00000002447	CPSF2	100	85.298	ENSPLAG00000019199	cpsf2	99	85.298	Poecilia_latipinna
ENSSSCG00000002447	CPSF2	96	85.658	ENSPMEG00000012100	cpsf2	100	85.027	Poecilia_mexicana
ENSSSCG00000002447	CPSF2	100	85.044	ENSPREG00000008960	cpsf2	100	85.044	Poecilia_reticulata
ENSSSCG00000002447	CPSF2	63	99.395	ENSPPYG00000029685	-	100	99.395	Pongo_abelii
ENSSSCG00000002447	CPSF2	100	99.105	ENSPCAG00000012477	CPSF2	100	99.105	Procavia_capensis
ENSSSCG00000002447	CPSF2	100	99.488	ENSPCOG00000026387	CPSF2	100	99.488	Propithecus_coquereli
ENSSSCG00000002447	CPSF2	65	100.000	ENSPVAG00000004223	CPSF2	65	100.000	Pteropus_vampyrus
ENSSSCG00000002447	CPSF2	100	85.190	ENSPNYG00000023356	cpsf2	100	85.190	Pundamilia_nyererei
ENSSSCG00000002447	CPSF2	100	86.785	ENSPNAG00000001849	cpsf2	100	86.785	Pygocentrus_nattereri
ENSSSCG00000002447	CPSF2	100	98.338	ENSRNOG00000005733	Cpsf2	100	98.338	Rattus_norvegicus
ENSSSCG00000002447	CPSF2	100	99.616	ENSRBIG00000044792	CPSF2	100	99.616	Rhinopithecus_bieti
ENSSSCG00000002447	CPSF2	100	99.616	ENSRROG00000034875	CPSF2	100	99.616	Rhinopithecus_roxellana
ENSSSCG00000002447	CPSF2	100	99.488	ENSSBOG00000024571	CPSF2	100	99.488	Saimiri_boliviensis_boliviensis
ENSSSCG00000002447	CPSF2	100	98.977	ENSSHAG00000010458	CPSF2	100	98.977	Sarcophilus_harrisii
ENSSSCG00000002447	CPSF2	100	87.166	ENSSFOG00015002117	cpsf2	100	87.166	Scleropages_formosus
ENSSSCG00000002447	CPSF2	100	84.030	ENSSMAG00000002001	cpsf2	100	84.030	Scophthalmus_maximus
ENSSSCG00000002447	CPSF2	100	86.058	ENSSDUG00000004084	cpsf2	100	86.058	Seriola_dumerili
ENSSSCG00000002447	CPSF2	100	85.551	ENSSLDG00000024330	cpsf2	100	85.551	Seriola_lalandi_dorsalis
ENSSSCG00000002447	CPSF2	58	100.000	ENSSARG00000009784	-	63	100.000	Sorex_araneus
ENSSSCG00000002447	CPSF2	100	95.785	ENSSPUG00000013485	CPSF2	100	95.785	Sphenodon_punctatus
ENSSSCG00000002447	CPSF2	100	85.171	ENSSPAG00000013284	cpsf2	100	85.171	Stegastes_partitus
ENSSSCG00000002447	CPSF2	100	96.424	ENSTGUG00000012571	-	100	96.424	Taeniopygia_guttata
ENSSSCG00000002447	CPSF2	100	84.411	ENSTRUG00000003742	cpsf2	100	84.411	Takifugu_rubripes
ENSSSCG00000002447	CPSF2	100	83.312	ENSTNIG00000012228	cpsf2	100	84.071	Tetraodon_nigroviridis
ENSSSCG00000002447	CPSF2	91	100.000	ENSTBEG00000004530	CPSF2	94	100.000	Tupaia_belangeri
ENSSSCG00000002447	CPSF2	88	100.000	ENSTTRG00000008697	CPSF2	88	100.000	Tursiops_truncatus
ENSSSCG00000002447	CPSF2	100	99.744	ENSUAMG00000028071	CPSF2	100	99.744	Ursus_americanus
ENSSSCG00000002447	CPSF2	100	99.744	ENSUMAG00000005029	CPSF2	100	99.744	Ursus_maritimus
ENSSSCG00000002447	CPSF2	99	99.616	ENSVPAG00000003503	CPSF2	100	99.616	Vicugna_pacos
ENSSSCG00000002447	CPSF2	100	99.616	ENSVVUG00000024642	CPSF2	100	99.616	Vulpes_vulpes
ENSSSCG00000002447	CPSF2	100	91.954	ENSXETG00000010289	cpsf2	100	91.954	Xenopus_tropicalis
ENSSSCG00000002447	CPSF2	100	85.551	ENSXCOG00000001764	cpsf2	100	85.551	Xiphophorus_couchianus
ENSSSCG00000002447	CPSF2	100	85.678	ENSXMAG00000017048	cpsf2	100	85.678	Xiphophorus_maculatus