EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000002505 (Gene tree)
Gene ID: 100156323
Gene Symbol: -
Alias: -
Full Name: poly(A) polymerase alpha
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 65514 bases
Position: chr7:117676398-117741911
Accession: 100156323
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000019601	PAP_RNA-bind	PF04926.15	7.9e-25	1	1
ENSSSCP00000041384	PAP_RNA-bind	PF04926.15	9.4e-25	1	1
ENSSSCP00000002712	PAP_RNA-bind	PF04926.15	9.5e-23	1	1
ENSSSCP00000059614	PAP_RNA-bind	PF04926.15	1.1e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000061740	-	4249	XM_021099685	ENSSSCP00000041384	693 (aa)	XP_020955344	A0A287ABK2
ENSSSCT00000053651	-	3134	XM_021099679	ENSSSCP00000059614	769 (aa)	XP_020955338	A0A287BSI1
ENSSSCT00000002783	-	2767	XM_001929075	ENSSSCP00000002712	739 (aa)	XP_001929110	F1SAQ7
ENSSSCT00000027948	-	4451	XM_021099683	ENSSSCP00000019601	718 (aa)	XP_020955342	I3L6F0

Gene Model

Click here to download ENSSSCG00000002505's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000002505's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000002505	-	98	62.378	ENSSSCG00000008389	PAPOLG	98	62.325

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000002505	-	100	98.121	ENSG00000090060	PAPOLA	100	98.121	Homo_sapiens
ENSSSCG00000002505	-	99	98.780	ENSAMEG00000014142	PAPOLA	99	98.780	Ailuropoda_melanoleuca
ENSSSCG00000002505	-	99	91.463	ENSAPLG00000006645	PAPOLA	99	91.045	Anas_platyrhynchos
ENSSSCG00000002505	-	99	92.287	ENSACAG00000013474	PAPOLA	99	95.599	Anolis_carolinensis
ENSSSCG00000002505	-	100	97.852	ENSANAG00000018274	PAPOLA	100	98.119	Aotus_nancymaae
ENSSSCG00000002505	-	77	91.199	ENSANAG00000027941	-	98	91.199	Aotus_nancymaae
ENSSSCG00000002505	-	100	73.247	ENSAMXG00000018141	papola	99	84.919	Astyanax_mexicanus
ENSSSCG00000002505	-	100	98.701	ENSBTAG00000004054	PAPOLA	100	98.701	Bos_taurus
ENSSSCG00000002505	-	100	97.854	ENSCJAG00000006512	PAPOLA	99	98.897	Callithrix_jacchus
ENSSSCG00000002505	-	100	98.389	ENSCAFG00000017783	PAPOLA	100	98.389	Canis_familiaris
ENSSSCG00000002505	-	100	99.025	ENSCAFG00020011550	PAPOLA	100	99.025	Canis_lupus_dingo
ENSSSCG00000002505	-	100	98.241	ENSCHIG00000025004	-	100	98.241	Capra_hircus
ENSSSCG00000002505	-	99	97.762	ENSTSYG00000012384	PAPOLA	99	97.762	Carlito_syrichta
ENSSSCG00000002505	-	100	93.795	ENSCPOG00000002648	PAPOLA	100	93.795	Cavia_porcellus
ENSSSCG00000002505	-	100	97.987	ENSCCAG00000025120	PAPOLA	100	97.987	Cebus_capucinus
ENSSSCG00000002505	-	100	98.121	ENSCATG00000018815	PAPOLA	99	99.255	Cercocebus_atys
ENSSSCG00000002505	-	100	97.980	ENSCLAG00000016342	PAPOLA	100	97.980	Chinchilla_lanigera
ENSSSCG00000002505	-	100	98.121	ENSCSAG00000010516	PAPOLA	100	98.121	Chlorocebus_sabaeus
ENSSSCG00000002505	-	72	83.924	ENSCHOG00000001115	PAPOLA	72	83.924	Choloepus_hoffmanni
ENSSSCG00000002505	-	100	93.514	ENSCPBG00000024125	PAPOLA	100	93.514	Chrysemys_picta_bellii
ENSSSCG00000002505	-	99	92.867	ENSCANG00000000159	PAPOLA	100	92.867	Colobus_angolensis_palliatus
ENSSSCG00000002505	-	100	97.547	ENSCGRG00001022693	-	100	97.547	Cricetulus_griseus_chok1gshd
ENSSSCG00000002505	-	100	88.227	ENSCGRG00001000229	-	99	89.871	Cricetulus_griseus_chok1gshd
ENSSSCG00000002505	-	99	84.417	ENSCGRG00001002732	-	99	84.417	Cricetulus_griseus_chok1gshd
ENSSSCG00000002505	-	98	81.267	ENSCGRG00000001888	-	96	80.716	Cricetulus_griseus_crigri
ENSSSCG00000002505	-	99	97.536	ENSCGRG00000003664	-	100	97.536	Cricetulus_griseus_crigri
ENSSSCG00000002505	-	100	84.278	ENSCGRG00000000257	-	100	84.278	Cricetulus_griseus_crigri
ENSSSCG00000002505	-	70	53.734	ENSCSEG00000001841	-	71	53.734	Cynoglossus_semilaevis
ENSSSCG00000002505	-	100	71.350	ENSDARG00000009585	papola	100	70.937	Danio_rerio
ENSSSCG00000002505	-	64	91.314	ENSDORG00000013415	-	100	91.525	Dipodomys_ordii
ENSSSCG00000002505	-	99	84.396	ENSETEG00000004889	PAPOLA	100	84.261	Echinops_telfairi
ENSSSCG00000002505	-	100	68.635	ENSELUG00000018972	papola	100	68.511	Esox_lucius
ENSSSCG00000002505	-	100	99.721	ENSFCAG00000006784	PAPOLA	100	99.721	Felis_catus
ENSSSCG00000002505	-	99	93.750	ENSFALG00000002547	PAPOLA	98	87.763	Ficedula_albicollis
ENSSSCG00000002505	-	99	96.667	ENSFDAG00000010370	PAPOLA	100	96.667	Fukomys_damarensis
ENSSSCG00000002505	-	73	65.996	ENSGMOG00000010209	papola	100	66.362	Gadus_morhua
ENSSSCG00000002505	-	100	90.811	ENSGALG00000033099	PAPOLA	100	90.541	Gallus_gallus
ENSSSCG00000002505	-	69	54.375	ENSGACG00000006142	-	100	53.958	Gasterosteus_aculeatus
ENSSSCG00000002505	-	96	95.770	ENSGAGG00000020500	PAPOLA	99	95.770	Gopherus_agassizii
ENSSSCG00000002505	-	100	98.121	ENSGGOG00000006287	PAPOLA	100	98.121	Gorilla_gorilla
ENSSSCG00000002505	-	99	86.104	ENSHGLG00000017457	-	100	85.422	Heterocephalus_glaber_female
ENSSSCG00000002505	-	100	79.026	ENSHGLG00000007467	-	100	78.620	Heterocephalus_glaber_female
ENSSSCG00000002505	-	100	97.403	ENSHGLG00000007909	-	100	97.403	Heterocephalus_glaber_female
ENSSSCG00000002505	-	100	97.258	ENSHGLG00100017273	PAPOLA	100	97.258	Heterocephalus_glaber_male
ENSSSCG00000002505	-	100	68.020	ENSIPUG00000005919	papola	100	67.134	Ictalurus_punctatus
ENSSSCG00000002505	-	100	98.846	ENSSTOG00000011471	PAPOLA	100	98.846	Ictidomys_tridecemlineatus
ENSSSCG00000002505	-	99	97.971	ENSJJAG00000024340	Papola	100	97.971	Jaculus_jaculus
ENSSSCG00000002505	-	99	76.923	ENSLACG00000018136	PAPOLA	99	76.923	Latimeria_chalumnae
ENSSSCG00000002505	-	99	66.086	ENSLOCG00000008632	papola	99	66.220	Lepisosteus_oculatus
ENSSSCG00000002505	-	99	97.690	ENSLAFG00000000946	PAPOLA	99	97.690	Loxodonta_africana
ENSSSCG00000002505	-	100	98.121	ENSMFAG00000001792	PAPOLA	100	98.121	Macaca_fascicularis
ENSSSCG00000002505	-	100	98.121	ENSMMUG00000018610	PAPOLA	100	98.121	Macaca_mulatta
ENSSSCG00000002505	-	100	98.121	ENSMNEG00000043747	PAPOLA	100	98.121	Macaca_nemestrina
ENSSSCG00000002505	-	100	98.121	ENSMLEG00000032066	PAPOLA	100	98.121	Mandrillus_leucophaeus
ENSSSCG00000002505	-	84	89.871	ENSMGAG00000013228	-	100	89.550	Meleagris_gallopavo
ENSSSCG00000002505	-	100	97.980	ENSMAUG00000017178	Papola	100	97.980	Mesocricetus_auratus
ENSSSCG00000002505	-	100	99.025	ENSMICG00000010347	PAPOLA	100	99.025	Microcebus_murinus
ENSSSCG00000002505	-	100	97.980	ENSMOCG00000021670	Papola	100	97.980	Microtus_ochrogaster
ENSSSCG00000002505	-	99	82.361	ENSMODG00000001969	-	99	82.361	Monodelphis_domestica
ENSSSCG00000002505	-	100	97.158	ENSMODG00000012887	-	100	97.158	Monodelphis_domestica
ENSSSCG00000002505	-	100	96.970	MGP_CAROLIEiJ_G0018093	Papola	100	96.970	Mus_caroli
ENSSSCG00000002505	-	100	97.258	ENSMUSG00000021111	Papola	100	97.258	Mus_musculus
ENSSSCG00000002505	-	100	97.258	MGP_PahariEiJ_G0029850	Papola	100	97.258	Mus_pahari
ENSSSCG00000002505	-	100	97.403	MGP_SPRETEiJ_G0018943	Papola	100	97.403	Mus_spretus
ENSSSCG00000002505	-	100	99.323	ENSMPUG00000003054	PAPOLA	100	99.323	Mustela_putorius_furo
ENSSSCG00000002505	-	100	96.752	ENSMLUG00000010922	PAPOLA	100	96.752	Myotis_lucifugus
ENSSSCG00000002505	-	100	97.403	ENSNGAG00000022172	Papola	100	97.403	Nannospalax_galili
ENSSSCG00000002505	-	99	93.218	ENSNLEG00000000625	PAPOLA	100	93.218	Nomascus_leucogenys
ENSSSCG00000002505	-	67	90.909	ENSMEUG00000007831	-	74	90.551	Notamacropus_eugenii
ENSSSCG00000002505	-	97	91.817	ENSOPRG00000007625	PAPOLA	100	91.817	Ochotona_princeps
ENSSSCG00000002505	-	69	54.202	ENSONIG00000001062	-	99	53.239	Oreochromis_niloticus
ENSSSCG00000002505	-	99	97.250	ENSOANG00000013812	PAPOLA	99	97.250	Ornithorhynchus_anatinus
ENSSSCG00000002505	-	99	95.387	ENSOCUG00000011531	PAPOLA	99	95.387	Oryctolagus_cuniculus
ENSSSCG00000002505	-	100	98.784	ENSOGAG00000004611	PAPOLA	100	98.784	Otolemur_garnettii
ENSSSCG00000002505	-	100	98.512	ENSOARG00000016579	-	100	98.512	Ovis_aries
ENSSSCG00000002505	-	100	98.121	ENSPPAG00000030505	PAPOLA	100	98.121	Pan_paniscus
ENSSSCG00000002505	-	100	99.721	ENSPPRG00000008616	PAPOLA	100	99.721	Panthera_pardus
ENSSSCG00000002505	-	99	99.720	ENSPTIG00000018852	PAPOLA	99	99.720	Panthera_tigris_altaica
ENSSSCG00000002505	-	100	98.121	ENSPTRG00000006704	PAPOLA	100	98.121	Pan_troglodytes
ENSSSCG00000002505	-	100	98.121	ENSPANG00000025582	PAPOLA	100	98.121	Papio_anubis
ENSSSCG00000002505	-	96	75.415	ENSPKIG00000014471	papola	100	70.588	Paramormyrops_kingsleyae
ENSSSCG00000002505	-	100	93.784	ENSPSIG00000014157	PAPOLA	87	93.784	Pelodiscus_sinensis
ENSSSCG00000002505	-	100	97.835	ENSPEMG00000000043	Papola	100	97.835	Peromyscus_maniculatus_bairdii
ENSSSCG00000002505	-	100	96.757	ENSPCIG00000013234	PAPOLA	100	96.757	Phascolarctos_cinereus
ENSSSCG00000002505	-	100	95.705	ENSPPYG00000006128	PAPOLA	100	95.705	Pongo_abelii
ENSSSCG00000002505	-	89	90.854	ENSPCAG00000004199	PAPOLA	100	90.854	Procavia_capensis
ENSSSCG00000002505	-	99	95.810	ENSPCOG00000022117	PAPOLA	99	95.810	Propithecus_coquereli
ENSSSCG00000002505	-	100	97.835	ENSPVAG00000013925	PAPOLA	100	97.835	Pteropus_vampyrus
ENSSSCG00000002505	-	100	72.214	ENSPNAG00000010467	papola	100	72.663	Pygocentrus_nattereri
ENSSSCG00000002505	-	100	95.805	ENSRNOG00000004827	Papola	100	95.805	Rattus_norvegicus
ENSSSCG00000002505	-	99	97.131	ENSRBIG00000038490	PAPOLA	100	97.131	Rhinopithecus_bieti
ENSSSCG00000002505	-	100	98.121	ENSRROG00000025545	PAPOLA	100	98.121	Rhinopithecus_roxellana
ENSSSCG00000002505	-	99	97.844	ENSSBOG00000024061	PAPOLA	100	97.712	Saimiri_boliviensis_boliviensis
ENSSSCG00000002505	-	99	96.739	ENSSHAG00000015211	PAPOLA	99	96.739	Sarcophilus_harrisii
ENSSSCG00000002505	-	100	71.546	ENSSFOG00015004431	papola	99	85.353	Scleropages_formosus
ENSSSCG00000002505	-	98	48.023	ENSSDUG00000018247	-	97	47.254	Seriola_dumerili
ENSSSCG00000002505	-	100	93.108	ENSSPUG00000005835	PAPOLA	100	93.108	Sphenodon_punctatus
ENSSSCG00000002505	-	99	91.180	ENSTGUG00000012687	PAPOLA	99	90.625	Taeniopygia_guttata
ENSSSCG00000002505	-	74	90.173	ENSTBEG00000000194	PAPOLA	75	90.173	Tupaia_belangeri
ENSSSCG00000002505	-	80	98.701	ENSTTRG00000005717	PAPOLA	80	98.701	Tursiops_truncatus
ENSSSCG00000002505	-	61	99.526	ENSUAMG00000025737	PAPOLA	98	99.526	Ursus_americanus
ENSSSCG00000002505	-	99	98.777	ENSVPAG00000006464	PAPOLA	100	98.777	Vicugna_pacos
ENSSSCG00000002505	-	100	99.423	ENSVVUG00000028340	PAPOLA	100	99.423	Vulpes_vulpes
ENSSSCG00000002505	-	100	83.152	ENSXETG00000013949	papola	100	83.085	Xenopus_tropicalis