EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000002799 (Gene tree)
Gene ID: 100511993
Gene Symbol: CNOT1
Alias: AD-005|CDC39|KIAA1007|NOT1|NOT1H
Full Name: CCR4-NOT transcription complex subunit 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 101327 bases
Position: chr6:20271594-20372920
Accession: 100511993
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000044324	Not1	PF04054.15	1.4e-152	1	1
ENSSSCP00000003019	Not1	PF04054.15	1.4e-152	1	1
ENSSSCP00000039077	Not1	PF04054.15	1.5e-152	1	1
ENSSSCP00000023830	Not1	PF04054.15	1.6e-152	1	1
ENSSSCP00000046752	Not1	PF04054.15	1.6e-152	1	1
ENSSSCP00000057930	Not1	PF04054.15	1.6e-152	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000003099	CNOT1-206	7308	XM_021093966	ENSSSCP00000003019	2241 (aa)	XP_020949625	F1RFU3
ENSSSCT00000062805	CNOT1-201	8176	XM_021093962	ENSSSCP00000046752	2314 (aa)	XP_020949621	A0A287ARQ6
ENSSSCT00000052383	CNOT1-204	8890	XM_021093953	ENSSSCP00000057930	2375 (aa)	XP_020949612	A0A287BNB0
ENSSSCT00000055198	CNOT1-203	8271	-	ENSSSCP00000044324	2142 (aa)	-	A0A287AK97
ENSSSCT00000023952	CNOT1-202	8281	-	ENSSSCP00000023830	2343 (aa)	-	I3LIC6
ENSSSCT00000060693	CNOT1-205	8743	-	ENSSSCP00000039077	2326 (aa)	-	A0A287A5J8

Gene Model

Click here to download ENSSSCG00000002799's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000002799's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000002799	CNOT1	100	99.621	ENSG00000125107	CNOT1	100	100.000	Homo_sapiens
ENSSSCG00000002799	CNOT1	97	96.774	ENSAPOG00000005042	cnot1	100	96.774	Acanthochromis_polyacanthus
ENSSSCG00000002799	CNOT1	100	99.453	ENSAMEG00000017298	CNOT1	100	99.453	Ailuropoda_melanoleuca
ENSSSCG00000002799	CNOT1	100	89.804	ENSACIG00000016003	cnot1	94	97.521	Amphilophus_citrinellus
ENSSSCG00000002799	CNOT1	100	96.407	ENSAPEG00000022342	cnot1	100	92.327	Amphiprion_percula
ENSSSCG00000002799	CNOT1	97	96.914	ENSATEG00000012892	cnot1	100	96.914	Anabas_testudineus
ENSSSCG00000002799	CNOT1	100	98.406	ENSAPLG00000007162	CNOT1	100	97.647	Anas_platyrhynchos
ENSSSCG00000002799	CNOT1	90	97.395	ENSACAG00000001602	CNOT1	98	96.243	Anolis_carolinensis
ENSSSCG00000002799	CNOT1	100	99.259	ENSANAG00000038198	CNOT1	100	96.732	Aotus_nancymaae
ENSSSCG00000002799	CNOT1	100	96.407	ENSACLG00000014234	cnot1	100	96.914	Astatotilapia_calliptera
ENSSSCG00000002799	CNOT1	100	96.208	ENSAMXG00000013170	cnot1	100	91.379	Astyanax_mexicanus
ENSSSCG00000002799	CNOT1	100	99.732	ENSBTAG00000020782	CNOT1	100	99.732	Bos_taurus
ENSSSCG00000002799	CNOT1	80	53.770	WBGene00002845	let-711	92	54.430	Caenorhabditis_elegans
ENSSSCG00000002799	CNOT1	100	99.579	ENSCJAG00000011318	CNOT1	100	99.579	Callithrix_jacchus
ENSSSCG00000002799	CNOT1	100	99.370	ENSCAFG00000008426	CNOT1	100	99.370	Canis_familiaris
ENSSSCG00000002799	CNOT1	100	99.316	ENSCAFG00020010156	CNOT1	100	99.316	Canis_lupus_dingo
ENSSSCG00000002799	CNOT1	100	99.705	ENSCHIG00000010452	CNOT1	100	99.705	Capra_hircus
ENSSSCG00000002799	CNOT1	100	99.747	ENSTSYG00000006888	CNOT1	100	99.747	Carlito_syrichta
ENSSSCG00000002799	CNOT1	100	98.802	ENSCPOG00000013026	CNOT1	100	94.992	Cavia_porcellus
ENSSSCG00000002799	CNOT1	100	99.360	ENSCCAG00000026333	CNOT1	100	99.360	Cebus_capucinus
ENSSSCG00000002799	CNOT1	100	99.663	ENSCATG00000032625	CNOT1	100	99.663	Cercocebus_atys
ENSSSCG00000002799	CNOT1	100	99.621	ENSCLAG00000006289	CNOT1	100	99.621	Chinchilla_lanigera
ENSSSCG00000002799	CNOT1	100	99.663	ENSCSAG00000004731	CNOT1	100	99.663	Chlorocebus_sabaeus
ENSSSCG00000002799	CNOT1	81	100.000	ENSCHOG00000009712	CNOT1	83	100.000	Choloepus_hoffmanni
ENSSSCG00000002799	CNOT1	98	99.444	ENSCPBG00000026222	CNOT1	99	99.444	Chrysemys_picta_bellii
ENSSSCG00000002799	CNOT1	100	82.258	ENSCING00000009149	-	95	81.275	Ciona_intestinalis
ENSSSCG00000002799	CNOT1	90	80.427	ENSCSAVG00000002414	-	94	81.984	Ciona_savignyi
ENSSSCG00000002799	CNOT1	100	98.805	ENSCANG00000040534	CNOT1	100	97.534	Colobus_angolensis_palliatus
ENSSSCG00000002799	CNOT1	100	99.327	ENSCGRG00001016365	Cnot1	100	99.327	Cricetulus_griseus_chok1gshd
ENSSSCG00000002799	CNOT1	100	99.327	ENSCGRG00000001714	Cnot1	100	99.327	Cricetulus_griseus_crigri
ENSSSCG00000002799	CNOT1	97	96.213	ENSCVAG00000018930	cnot1	100	96.213	Cyprinodon_variegatus
ENSSSCG00000002799	CNOT1	100	95.808	ENSDARG00000004174	cnot1	95	95.808	Danio_rerio
ENSSSCG00000002799	CNOT1	100	97.139	ENSDNOG00000013250	CNOT1	100	97.139	Dasypus_novemcinctus
ENSSSCG00000002799	CNOT1	99	68.815	FBgn0085436	Not1	94	68.530	Drosophila_melanogaster
ENSSSCG00000002799	CNOT1	86	96.423	ENSETEG00000012806	CNOT1	84	97.440	Echinops_telfairi
ENSSSCG00000002799	CNOT1	83	77.136	ENSEBUG00000011534	cnot1	95	77.136	Eptatretus_burgeri
ENSSSCG00000002799	CNOT1	100	98.805	ENSEASG00005005819	CNOT1	100	99.861	Equus_asinus_asinus
ENSSSCG00000002799	CNOT1	100	99.747	ENSECAG00000009889	CNOT1	100	99.860	Equus_caballus
ENSSSCG00000002799	CNOT1	90	99.608	ENSEEUG00000006015	CNOT1	90	99.608	Erinaceus_europaeus
ENSSSCG00000002799	CNOT1	100	92.529	ENSELUG00000014085	cnot1	100	90.421	Esox_lucius
ENSSSCG00000002799	CNOT1	100	99.454	ENSFCAG00000025155	CNOT1	100	99.454	Felis_catus
ENSSSCG00000002799	CNOT1	100	98.611	ENSFALG00000007285	CNOT1	100	97.685	Ficedula_albicollis
ENSSSCG00000002799	CNOT1	100	99.537	ENSFDAG00000013399	CNOT1	100	99.537	Fukomys_damarensis
ENSSSCG00000002799	CNOT1	100	95.609	ENSFHEG00000020574	cnot1	95	95.609	Fundulus_heteroclitus
ENSSSCG00000002799	CNOT1	90	95.290	ENSGMOG00000012864	cnot1	100	89.681	Gadus_morhua
ENSSSCG00000002799	CNOT1	100	98.204	ENSGALG00000002301	CNOT1	100	97.727	Gallus_gallus
ENSSSCG00000002799	CNOT1	100	96.579	ENSGAFG00000015005	cnot1	97	95.139	Gambusia_affinis
ENSSSCG00000002799	CNOT1	90	95.307	ENSGACG00000002606	cnot1	100	95.388	Gasterosteus_aculeatus
ENSSSCG00000002799	CNOT1	100	98.603	ENSGAGG00000022646	CNOT1	100	97.812	Gopherus_agassizii
ENSSSCG00000002799	CNOT1	100	99.579	ENSGGOG00000009547	CNOT1	100	99.579	Gorilla_gorilla
ENSSSCG00000002799	CNOT1	100	96.407	ENSHBUG00000001729	cnot1	100	96.914	Haplochromis_burtoni
ENSSSCG00000002799	CNOT1	100	99.453	ENSHGLG00000014322	CNOT1	100	99.453	Heterocephalus_glaber_female
ENSSSCG00000002799	CNOT1	100	95.020	ENSHCOG00000006501	cnot1	95	95.020	Hippocampus_comes
ENSSSCG00000002799	CNOT1	100	93.898	ENSIPUG00000011915	cnot1	100	90.878	Ictalurus_punctatus
ENSSSCG00000002799	CNOT1	100	99.537	ENSSTOG00000005490	CNOT1	100	99.537	Ictidomys_tridecemlineatus
ENSSSCG00000002799	CNOT1	100	98.948	ENSJJAG00000000633	Cnot1	100	98.948	Jaculus_jaculus
ENSSSCG00000002799	CNOT1	100	96.208	ENSKMAG00000006149	cnot1	95	96.208	Kryptolebias_marmoratus
ENSSSCG00000002799	CNOT1	95	96.414	ENSLBEG00000004740	cnot1	100	96.414	Labrus_bergylta
ENSSSCG00000002799	CNOT1	100	98.204	ENSLACG00000010869	CNOT1	97	98.056	Latimeria_chalumnae
ENSSSCG00000002799	CNOT1	100	96.607	ENSLOCG00000006324	cnot1	97	96.250	Lepisosteus_oculatus
ENSSSCG00000002799	CNOT1	100	99.495	ENSLAFG00000000098	CNOT1	100	99.495	Loxodonta_africana
ENSSSCG00000002799	CNOT1	100	99.411	ENSMFAG00000035888	CNOT1	100	99.411	Macaca_fascicularis
ENSSSCG00000002799	CNOT1	100	99.621	ENSMMUG00000014625	CNOT1	100	99.621	Macaca_mulatta
ENSSSCG00000002799	CNOT1	100	99.395	ENSMNEG00000031820	CNOT1	100	99.673	Macaca_nemestrina
ENSSSCG00000002799	CNOT1	100	99.316	ENSMLEG00000040933	CNOT1	100	98.232	Mandrillus_leucophaeus
ENSSSCG00000002799	CNOT1	100	94.012	ENSMAMG00000016524	cnot1	100	91.042	Mastacembelus_armatus
ENSSSCG00000002799	CNOT1	97	96.914	ENSMZEG00005016210	cnot1	100	96.914	Maylandia_zebra
ENSSSCG00000002799	CNOT1	100	98.204	ENSMGAG00000001908	CNOT1	100	97.475	Meleagris_gallopavo
ENSSSCG00000002799	CNOT1	100	99.537	ENSMICG00000007071	CNOT1	100	99.537	Microcebus_murinus
ENSSSCG00000002799	CNOT1	100	99.369	ENSMOCG00000017969	Cnot1	100	99.369	Microtus_ochrogaster
ENSSSCG00000002799	CNOT1	97	93.548	ENSMMOG00000019134	cnot1	100	93.548	Mola_mola
ENSSSCG00000002799	CNOT1	100	98.008	ENSMODG00000014199	CNOT1	100	97.897	Monodelphis_domestica
ENSSSCG00000002799	CNOT1	100	96.208	ENSMALG00000008645	cnot1	100	92.110	Monopterus_albus
ENSSSCG00000002799	CNOT1	98	99.048	MGP_CAROLIEiJ_G0031430	Cnot1	92	99.666	Mus_caroli
ENSSSCG00000002799	CNOT1	100	99.411	ENSMUSG00000036550	Cnot1	100	99.411	Mus_musculus
ENSSSCG00000002799	CNOT1	100	99.369	MGP_PahariEiJ_G0023028	Cnot1	100	99.369	Mus_pahari
ENSSSCG00000002799	CNOT1	100	99.411	MGP_SPRETEiJ_G0032549	Cnot1	100	99.411	Mus_spretus
ENSSSCG00000002799	CNOT1	100	99.747	ENSMPUG00000004830	CNOT1	100	99.747	Mustela_putorius_furo
ENSSSCG00000002799	CNOT1	100	99.116	ENSMLUG00000003728	CNOT1	100	99.116	Myotis_lucifugus
ENSSSCG00000002799	CNOT1	100	99.579	ENSNGAG00000018628	Cnot1	100	99.579	Nannospalax_galili
ENSSSCG00000002799	CNOT1	94	96.914	ENSNBRG00000019358	cnot1	100	96.914	Neolamprologus_brichardi
ENSSSCG00000002799	CNOT1	100	99.537	ENSNLEG00000003566	CNOT1	100	99.537	Nomascus_leucogenys
ENSSSCG00000002799	CNOT1	88	98.824	ENSMEUG00000006145	CNOT1	88	98.658	Notamacropus_eugenii
ENSSSCG00000002799	CNOT1	90	100.000	ENSOPRG00000005604	CNOT1	86	100.000	Ochotona_princeps
ENSSSCG00000002799	CNOT1	100	99.495	ENSODEG00000016337	CNOT1	100	99.495	Octodon_degus
ENSSSCG00000002799	CNOT1	100	96.407	ENSONIG00000007358	cnot1	95	96.024	Oreochromis_niloticus
ENSSSCG00000002799	CNOT1	99	97.610	ENSOANG00000012109	CNOT1	100	98.213	Ornithorhynchus_anatinus
ENSSSCG00000002799	CNOT1	100	99.663	ENSOCUG00000006911	CNOT1	100	99.663	Oryctolagus_cuniculus
ENSSSCG00000002799	CNOT1	100	96.208	ENSORLG00000013734	cnot1	95	96.208	Oryzias_latipes
ENSSSCG00000002799	CNOT1	100	88.744	ENSORLG00020017012	cnot1	100	88.423	Oryzias_latipes_hni
ENSSSCG00000002799	CNOT1	100	88.660	ENSORLG00015007091	cnot1	100	88.171	Oryzias_latipes_hsok
ENSSSCG00000002799	CNOT1	100	87.998	ENSOMEG00000015124	cnot1	100	88.287	Oryzias_melastigma
ENSSSCG00000002799	CNOT1	100	99.579	ENSOGAG00000000543	CNOT1	100	99.579	Otolemur_garnettii
ENSSSCG00000002799	CNOT1	100	99.705	ENSOARG00000001567	CNOT1	100	99.705	Ovis_aries
ENSSSCG00000002799	CNOT1	100	99.621	ENSPPAG00000022013	CNOT1	100	99.621	Pan_paniscus
ENSSSCG00000002799	CNOT1	100	99.747	ENSPPRG00000004867	CNOT1	100	99.747	Panthera_pardus
ENSSSCG00000002799	CNOT1	100	99.747	ENSPTIG00000012589	CNOT1	100	99.747	Panthera_tigris_altaica
ENSSSCG00000002799	CNOT1	100	99.348	ENSPTRG00000008183	CNOT1	100	99.329	Pan_troglodytes
ENSSSCG00000002799	CNOT1	100	98.805	ENSPANG00000020901	CNOT1	100	96.180	Papio_anubis
ENSSSCG00000002799	CNOT1	100	96.607	ENSPKIG00000023538	CNOT1	100	92.869	Paramormyrops_kingsleyae
ENSSSCG00000002799	CNOT1	97	93.800	ENSPKIG00000002914	CNOT1	99	93.118	Paramormyrops_kingsleyae
ENSSSCG00000002799	CNOT1	100	98.204	ENSPSIG00000005499	CNOT1	100	97.685	Pelodiscus_sinensis
ENSSSCG00000002799	CNOT1	100	90.020	ENSPMAG00000009381	cnot1	95	89.662	Petromyzon_marinus
ENSSSCG00000002799	CNOT1	100	98.207	ENSPCIG00000007343	CNOT1	100	99.444	Phascolarctos_cinereus
ENSSSCG00000002799	CNOT1	99	96.610	ENSPFOG00000003497	cnot1	95	95.397	Poecilia_formosa
ENSSSCG00000002799	CNOT1	95	96.008	ENSPLAG00000014018	cnot1	100	96.970	Poecilia_latipinna
ENSSSCG00000002799	CNOT1	95	96.008	ENSPMEG00000005868	cnot1	100	96.970	Poecilia_mexicana
ENSSSCG00000002799	CNOT1	95	96.008	ENSPREG00000018793	cnot1	100	96.970	Poecilia_reticulata
ENSSSCG00000002799	CNOT1	100	99.579	ENSPPYG00000007410	CNOT1	100	99.579	Pongo_abelii
ENSSSCG00000002799	CNOT1	91	97.785	ENSPCAG00000003241	CNOT1	88	99.468	Procavia_capensis
ENSSSCG00000002799	CNOT1	100	99.287	ENSPCOG00000027139	CNOT1	100	99.287	Propithecus_coquereli
ENSSSCG00000002799	CNOT1	100	98.917	ENSPVAG00000004243	CNOT1	100	97.138	Pteropus_vampyrus
ENSSSCG00000002799	CNOT1	97	96.914	ENSPNYG00000012919	cnot1	100	96.914	Pundamilia_nyererei
ENSSSCG00000002799	CNOT1	100	96.982	ENSPNAG00000000246	cnot1	100	92.182	Pygocentrus_nattereri
ENSSSCG00000002799	CNOT1	100	99.327	ENSRNOG00000012271	Cnot1	100	99.327	Rattus_norvegicus
ENSSSCG00000002799	CNOT1	100	98.805	ENSRBIG00000044598	CNOT1	100	97.314	Rhinopithecus_bieti
ENSSSCG00000002799	CNOT1	100	99.663	ENSRROG00000000906	CNOT1	100	99.663	Rhinopithecus_roxellana
ENSSSCG00000002799	CNOT1	63	31.373	YCR093W	CDC39	68	34.074	Saccharomyces_cerevisiae
ENSSSCG00000002799	CNOT1	100	95.268	ENSSBOG00000029155	CNOT1	100	95.186	Saimiri_boliviensis_boliviensis
ENSSSCG00000002799	CNOT1	100	98.204	ENSSHAG00000012187	CNOT1	100	98.024	Sarcophilus_harrisii
ENSSSCG00000002799	CNOT1	100	90.528	ENSSFOG00015017614	cnot1	100	90.268	Scleropages_formosus
ENSSSCG00000002799	CNOT1	100	96.407	ENSSMAG00000013844	cnot1	100	96.914	Scophthalmus_maximus
ENSSSCG00000002799	CNOT1	97	96.774	ENSSDUG00000021491	cnot1	100	96.774	Seriola_dumerili
ENSSSCG00000002799	CNOT1	100	96.208	ENSSLDG00000014816	cnot1	100	96.774	Seriola_lalandi_dorsalis
ENSSSCG00000002799	CNOT1	86	100.000	ENSSARG00000000762	CNOT1	88	100.000	Sorex_araneus
ENSSSCG00000002799	CNOT1	100	96.407	ENSSPAG00000018802	cnot1	100	92.245	Stegastes_partitus
ENSSSCG00000002799	CNOT1	100	98.611	ENSTGUG00000005919	CNOT1	100	97.562	Taeniopygia_guttata
ENSSSCG00000002799	CNOT1	100	95.808	ENSTNIG00000018706	cnot1	95	95.808	Tetraodon_nigroviridis
ENSSSCG00000002799	CNOT1	82	100.000	ENSTBEG00000000720	CNOT1	80	100.000	Tupaia_belangeri
ENSSSCG00000002799	CNOT1	95	99.359	ENSTTRG00000008460	CNOT1	95	99.359	Tursiops_truncatus
ENSSSCG00000002799	CNOT1	100	99.747	ENSUAMG00000009251	CNOT1	100	99.747	Ursus_americanus
ENSSSCG00000002799	CNOT1	100	99.747	ENSUMAG00000021291	CNOT1	100	99.747	Ursus_maritimus
ENSSSCG00000002799	CNOT1	97	98.802	ENSVPAG00000008846	CNOT1	97	97.462	Vicugna_pacos
ENSSSCG00000002799	CNOT1	100	99.316	ENSVVUG00000024037	CNOT1	100	99.316	Vulpes_vulpes
ENSSSCG00000002799	CNOT1	100	99.394	ENSXETG00000015900	cnot1	95	99.394	Xenopus_tropicalis
ENSSSCG00000002799	CNOT1	100	96.781	ENSXCOG00000013552	cnot1	100	91.127	Xiphophorus_couchianus
ENSSSCG00000002799	CNOT1	100	96.781	ENSXMAG00000006031	cnot1	100	91.170	Xiphophorus_maculatus