EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000002807 (Gene tree)
Gene ID: 100513409
Gene Symbol: USB1
Alias: C16orf57|C6H16orf57
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 20983 bases
Position: chr6:19852094-19873076
Accession: 100513409
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000003027	HVSL	PF09749.9	1.9e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000003107	-	804	-	ENSSSCP00000003027	268 (aa)	-	F1RFS6

Gene Model

Click here to download ENSSSCG00000002807's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000002807's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000002807	USB1	100	81.413	ENSG00000103005	USB1	100	87.850	Homo_sapiens
ENSSSCG00000002807	USB1	98	48.746	ENSAPOG00000011942	usb1	99	48.029	Acanthochromis_polyacanthus
ENSSSCG00000002807	USB1	100	86.245	ENSAMEG00000017205	USB1	100	86.245	Ailuropoda_melanoleuca
ENSSSCG00000002807	USB1	84	54.185	ENSACIG00000012234	usb1	99	50.923	Amphilophus_citrinellus
ENSSSCG00000002807	USB1	98	49.466	ENSAOCG00000014831	usb1	99	49.466	Amphiprion_ocellaris
ENSSSCG00000002807	USB1	98	49.822	ENSAPEG00000000296	usb1	99	49.822	Amphiprion_percula
ENSSSCG00000002807	USB1	88	51.681	ENSATEG00000009348	usb1	84	51.681	Anabas_testudineus
ENSSSCG00000002807	USB1	83	70.796	ENSAPLG00000002756	USB1	100	70.796	Anas_platyrhynchos
ENSSSCG00000002807	USB1	83	64.602	ENSACAG00000015481	USB1	99	64.602	Anolis_carolinensis
ENSSSCG00000002807	USB1	100	82.156	ENSANAG00000035640	USB1	100	83.643	Aotus_nancymaae
ENSSSCG00000002807	USB1	91	51.230	ENSACLG00000020586	usb1	84	51.230	Astatotilapia_calliptera
ENSSSCG00000002807	USB1	84	52.000	ENSAMXG00000040146	usb1	75	52.000	Astyanax_mexicanus
ENSSSCG00000002807	USB1	100	88.476	ENSBTAG00000015758	USB1	100	88.476	Bos_taurus
ENSSSCG00000002807	USB1	100	84.387	ENSCJAG00000011733	USB1	100	85.874	Callithrix_jacchus
ENSSSCG00000002807	USB1	99	82.353	ENSCAFG00000008556	USB1	73	83.088	Canis_familiaris
ENSSSCG00000002807	USB1	99	81.343	ENSCAFG00020009263	USB1	99	81.343	Canis_lupus_dingo
ENSSSCG00000002807	USB1	100	86.617	ENSCHIG00000024290	USB1	100	86.617	Capra_hircus
ENSSSCG00000002807	USB1	100	81.784	ENSTSYG00000006997	USB1	100	83.271	Carlito_syrichta
ENSSSCG00000002807	USB1	86	71.983	ENSCAPG00000009057	USB1	100	71.983	Cavia_aperea
ENSSSCG00000002807	USB1	100	83.271	ENSCPOG00000014325	USB1	100	83.271	Cavia_porcellus
ENSSSCG00000002807	USB1	100	82.900	ENSCCAG00000022132	USB1	100	84.387	Cebus_capucinus
ENSSSCG00000002807	USB1	100	82.156	ENSCATG00000032174	USB1	100	83.643	Cercocebus_atys
ENSSSCG00000002807	USB1	66	90.341	ENSCLAG00000007363	USB1	100	90.341	Chinchilla_lanigera
ENSSSCG00000002807	USB1	100	82.900	ENSCSAG00000004783	USB1	100	84.387	Chlorocebus_sabaeus
ENSSSCG00000002807	USB1	91	66.393	ENSCPBG00000026943	USB1	100	63.441	Chrysemys_picta_bellii
ENSSSCG00000002807	USB1	83	33.333	ENSCING00000011490	-	86	33.333	Ciona_intestinalis
ENSSSCG00000002807	USB1	100	83.643	ENSCANG00000037135	USB1	100	83.271	Colobus_angolensis_palliatus
ENSSSCG00000002807	USB1	100	82.900	ENSCGRG00001011243	USB1	100	82.900	Cricetulus_griseus_chok1gshd
ENSSSCG00000002807	USB1	100	82.900	ENSCGRG00000013252	USB1	100	82.900	Cricetulus_griseus_crigri
ENSSSCG00000002807	USB1	98	48.727	ENSCSEG00000013881	usb1	99	47.445	Cynoglossus_semilaevis
ENSSSCG00000002807	USB1	83	49.561	ENSCVAG00000009252	usb1	97	50.000	Cyprinodon_variegatus
ENSSSCG00000002807	USB1	89	48.954	ENSDARG00000003841	usb1	99	45.818	Danio_rerio
ENSSSCG00000002807	USB1	100	80.586	ENSDORG00000001888	Usb1	100	81.413	Dipodomys_ordii
ENSSSCG00000002807	USB1	78	39.720	FBgn0037713	CG16790	79	39.720	Drosophila_melanogaster
ENSSSCG00000002807	USB1	100	68.773	ENSETEG00000019682	USB1	100	68.773	Echinops_telfairi
ENSSSCG00000002807	USB1	82	50.901	ENSEBUG00000005889	usb1	78	50.901	Eptatretus_burgeri
ENSSSCG00000002807	USB1	100	86.245	ENSEASG00005005484	USB1	100	86.245	Equus_asinus_asinus
ENSSSCG00000002807	USB1	100	86.989	ENSECAG00000019493	USB1	91	86.989	Equus_caballus
ENSSSCG00000002807	USB1	66	80.114	ENSEEUG00000000154	USB1	66	80.114	Erinaceus_europaeus
ENSSSCG00000002807	USB1	88	47.479	ENSELUG00000010974	usb1	99	44.853	Esox_lucius
ENSSSCG00000002807	USB1	100	85.874	ENSFCAG00000002693	USB1	100	85.874	Felis_catus
ENSSSCG00000002807	USB1	99	62.030	ENSFALG00000006876	USB1	99	62.030	Ficedula_albicollis
ENSSSCG00000002807	USB1	100	84.015	ENSFDAG00000010052	USB1	100	84.015	Fukomys_damarensis
ENSSSCG00000002807	USB1	85	48.560	ENSFHEG00000012334	usb1	96	48.560	Fundulus_heteroclitus
ENSSSCG00000002807	USB1	83	52.018	ENSGMOG00000004228	usb1	99	52.018	Gadus_morhua
ENSSSCG00000002807	USB1	83	68.750	ENSGALG00000035604	USB1	99	63.060	Gallus_gallus
ENSSSCG00000002807	USB1	98	49.819	ENSGAFG00000021890	usb1	99	49.458	Gambusia_affinis
ENSSSCG00000002807	USB1	93	49.398	ENSGACG00000003257	usb1	99	48.551	Gasterosteus_aculeatus
ENSSSCG00000002807	USB1	100	63.736	ENSGAGG00000022572	USB1	100	63.736	Gopherus_agassizii
ENSSSCG00000002807	USB1	100	82.156	ENSGGOG00000017147	USB1	100	83.643	Gorilla_gorilla
ENSSSCG00000002807	USB1	91	52.049	ENSHBUG00000009823	usb1	85	52.049	Haplochromis_burtoni
ENSSSCG00000002807	USB1	100	83.643	ENSHGLG00000016078	USB1	98	83.643	Heterocephalus_glaber_female
ENSSSCG00000002807	USB1	100	83.643	ENSHGLG00100005562	USB1	98	83.643	Heterocephalus_glaber_male
ENSSSCG00000002807	USB1	81	53.456	ENSHCOG00000015633	usb1	99	48.699	Hippocampus_comes
ENSSSCG00000002807	USB1	98	47.222	ENSIPUG00000008601	usb1	84	50.410	Ictalurus_punctatus
ENSSSCG00000002807	USB1	100	83.150	ENSSTOG00000007548	USB1	100	82.784	Ictidomys_tridecemlineatus
ENSSSCG00000002807	USB1	100	85.130	ENSJJAG00000021859	Usb1	100	85.130	Jaculus_jaculus
ENSSSCG00000002807	USB1	88	50.000	ENSKMAG00000007200	usb1	99	48.571	Kryptolebias_marmoratus
ENSSSCG00000002807	USB1	77	53.110	ENSLBEG00000008452	usb1	65	55.155	Labrus_bergylta
ENSSSCG00000002807	USB1	89	53.815	ENSLACG00000000105	USB1	92	53.585	Latimeria_chalumnae
ENSSSCG00000002807	USB1	98	49.329	ENSLOCG00000000465	usb1	99	52.313	Lepisosteus_oculatus
ENSSSCG00000002807	USB1	100	67.037	ENSLAFG00000002267	USB1	100	67.407	Loxodonta_africana
ENSSSCG00000002807	USB1	100	82.528	ENSMFAG00000003926	USB1	100	84.015	Macaca_fascicularis
ENSSSCG00000002807	USB1	100	82.528	ENSMMUG00000022669	USB1	100	84.015	Macaca_mulatta
ENSSSCG00000002807	USB1	100	82.156	ENSMNEG00000042487	USB1	100	83.643	Macaca_nemestrina
ENSSSCG00000002807	USB1	100	82.528	ENSMLEG00000028756	USB1	100	84.015	Mandrillus_leucophaeus
ENSSSCG00000002807	USB1	98	48.736	ENSMAMG00000015092	usb1	85	51.681	Mastacembelus_armatus
ENSSSCG00000002807	USB1	91	51.230	ENSMZEG00005010008	usb1	85	51.230	Maylandia_zebra
ENSSSCG00000002807	USB1	100	82.156	ENSMAUG00000007832	Usb1	100	82.156	Mesocricetus_auratus
ENSSSCG00000002807	USB1	100	82.528	ENSMICG00000004900	USB1	100	84.015	Microcebus_murinus
ENSSSCG00000002807	USB1	100	81.041	ENSMOCG00000022647	Usb1	100	81.041	Microtus_ochrogaster
ENSSSCG00000002807	USB1	85	51.754	ENSMMOG00000000490	usb1	99	48.864	Mola_mola
ENSSSCG00000002807	USB1	100	66.421	ENSMODG00000014067	USB1	100	65.799	Monodelphis_domestica
ENSSSCG00000002807	USB1	93	48.996	ENSMALG00000005930	usb1	99	46.619	Monopterus_albus
ENSSSCG00000002807	USB1	100	81.041	MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	Mus_caroli
ENSSSCG00000002807	USB1	100	80.669	ENSMUSG00000031792	Usb1	100	83.186	Mus_musculus
ENSSSCG00000002807	USB1	100	81.413	MGP_PahariEiJ_G0023019	Usb1	100	85.470	Mus_pahari
ENSSSCG00000002807	USB1	100	80.297	MGP_SPRETEiJ_G0032540	Usb1	100	80.297	Mus_spretus
ENSSSCG00000002807	USB1	100	84.015	ENSMPUG00000004684	USB1	96	84.015	Mustela_putorius_furo
ENSSSCG00000002807	USB1	86	90.043	ENSMLUG00000007400	USB1	100	90.043	Myotis_lucifugus
ENSSSCG00000002807	USB1	100	85.874	ENSNGAG00000009703	Usb1	100	85.874	Nannospalax_galili
ENSSSCG00000002807	USB1	88	48.319	ENSNBRG00000008747	usb1	99	52.336	Neolamprologus_brichardi
ENSSSCG00000002807	USB1	94	81.890	ENSNLEG00000003340	USB1	100	83.465	Nomascus_leucogenys
ENSSSCG00000002807	USB1	57	58.333	ENSMEUG00000003328	-	100	61.538	Notamacropus_eugenii
ENSSSCG00000002807	USB1	62	85.294	ENSOPRG00000011803	USB1	72	85.294	Ochotona_princeps
ENSSSCG00000002807	USB1	100	82.156	ENSODEG00000016214	USB1	100	81.041	Octodon_degus
ENSSSCG00000002807	USB1	98	48.746	ENSONIG00000011063	usb1	99	47.122	Oreochromis_niloticus
ENSSSCG00000002807	USB1	87	69.362	ENSOANG00000012118	USB1	97	69.362	Ornithorhynchus_anatinus
ENSSSCG00000002807	USB1	92	47.082	ENSORLG00000012479	usb1	99	46.715	Oryzias_latipes
ENSSSCG00000002807	USB1	87	49.362	ENSORLG00020018671	usb1	99	46.715	Oryzias_latipes_hni
ENSSSCG00000002807	USB1	92	47.082	ENSORLG00015009679	usb1	99	46.350	Oryzias_latipes_hsok
ENSSSCG00000002807	USB1	87	48.936	ENSOMEG00000012930	usb1	99	47.273	Oryzias_melastigma
ENSSSCG00000002807	USB1	100	77.695	ENSOGAG00000003273	USB1	100	79.182	Otolemur_garnettii
ENSSSCG00000002807	USB1	92	88.664	ENSOARG00000001107	USB1	94	88.980	Ovis_aries
ENSSSCG00000002807	USB1	100	81.784	ENSPPAG00000042137	USB1	100	83.271	Pan_paniscus
ENSSSCG00000002807	USB1	100	84.387	ENSPPRG00000024797	USB1	100	84.387	Panthera_pardus
ENSSSCG00000002807	USB1	100	84.387	ENSPTIG00000007506	USB1	100	84.387	Panthera_tigris_altaica
ENSSSCG00000002807	USB1	100	75.465	ENSPTRG00000008172	USB1	100	88.785	Pan_troglodytes
ENSSSCG00000002807	USB1	100	82.528	ENSPANG00000025138	USB1	100	84.015	Papio_anubis
ENSSSCG00000002807	USB1	96	50.579	ENSPKIG00000015109	usb1	75	55.605	Paramormyrops_kingsleyae
ENSSSCG00000002807	USB1	83	53.947	ENSPSIG00000004305	USB1	100	53.947	Pelodiscus_sinensis
ENSSSCG00000002807	USB1	84	52.000	ENSPMGG00000017725	usb1	97	48.669	Periophthalmus_magnuspinnatus
ENSSSCG00000002807	USB1	100	82.721	ENSPEMG00000016183	Usb1	100	81.227	Peromyscus_maniculatus_bairdii
ENSSSCG00000002807	USB1	87	50.847	ENSPMAG00000000462	usb1	99	50.847	Petromyzon_marinus
ENSSSCG00000002807	USB1	98	48.736	ENSPFOG00000011130	usb1	86	50.628	Poecilia_formosa
ENSSSCG00000002807	USB1	98	48.736	ENSPLAG00000009820	usb1	86	50.628	Poecilia_latipinna
ENSSSCG00000002807	USB1	98	49.097	ENSPMEG00000006402	usb1	99	48.375	Poecilia_mexicana
ENSSSCG00000002807	USB1	85	49.794	ENSPREG00000001047	usb1	98	49.794	Poecilia_reticulata
ENSSSCG00000002807	USB1	95	78.125	ENSPPYG00000007401	USB1	100	79.688	Pongo_abelii
ENSSSCG00000002807	USB1	100	82.528	ENSPCOG00000022612	USB1	100	84.015	Propithecus_coquereli
ENSSSCG00000002807	USB1	100	83.271	ENSPVAG00000004613	USB1	100	83.271	Pteropus_vampyrus
ENSSSCG00000002807	USB1	98	47.547	ENSPNYG00000022262	usb1	85	52.049	Pundamilia_nyererei
ENSSSCG00000002807	USB1	89	50.209	ENSPNAG00000011736	usb1	81	50.209	Pygocentrus_nattereri
ENSSSCG00000002807	USB1	100	81.784	ENSRNOG00000013216	Usb1	100	81.784	Rattus_norvegicus
ENSSSCG00000002807	USB1	100	78.439	ENSRBIG00000044466	USB1	100	90.187	Rhinopithecus_bieti
ENSSSCG00000002807	USB1	100	84.387	ENSRROG00000029211	USB1	100	84.015	Rhinopithecus_roxellana
ENSSSCG00000002807	USB1	100	83.271	ENSSBOG00000029362	USB1	100	84.758	Saimiri_boliviensis_boliviensis
ENSSSCG00000002807	USB1	81	71.101	ENSSHAG00000006993	USB1	93	68.644	Sarcophilus_harrisii
ENSSSCG00000002807	USB1	86	57.143	ENSSFOG00015023663	usb1	73	57.143	Scleropages_formosus
ENSSSCG00000002807	USB1	98	49.458	ENSSMAG00000015834	usb1	85	50.598	Scophthalmus_maximus
ENSSSCG00000002807	USB1	84	54.867	ENSSDUG00000002949	usb1	99	49.638	Seriola_dumerili
ENSSSCG00000002807	USB1	88	52.101	ENSSLDG00000014174	usb1	85	52.101	Seriola_lalandi_dorsalis
ENSSSCG00000002807	USB1	80	69.159	ENSSPUG00000006741	USB1	100	69.159	Sphenodon_punctatus
ENSSSCG00000002807	USB1	98	48.057	ENSSPAG00000007484	usb1	83	50.840	Stegastes_partitus
ENSSSCG00000002807	USB1	79	69.340	ENSTGUG00000004792	USB1	99	62.030	Taeniopygia_guttata
ENSSSCG00000002807	USB1	98	47.955	ENSTRUG00000021069	usb1	99	47.955	Takifugu_rubripes
ENSSSCG00000002807	USB1	98	47.170	ENSTNIG00000000626	usb1	98	46.212	Tetraodon_nigroviridis
ENSSSCG00000002807	USB1	86	61.638	ENSTBEG00000001507	USB1	100	61.638	Tupaia_belangeri
ENSSSCG00000002807	USB1	100	85.502	ENSUAMG00000016823	USB1	100	85.502	Ursus_americanus
ENSSSCG00000002807	USB1	80	87.383	ENSUMAG00000021369	USB1	100	87.383	Ursus_maritimus
ENSSSCG00000002807	USB1	77	62.136	ENSVPAG00000009834	-	59	90.833	Vicugna_pacos
ENSSSCG00000002807	USB1	99	85.448	ENSVVUG00000023700	USB1	93	83.817	Vulpes_vulpes
ENSSSCG00000002807	USB1	81	57.798	ENSXETG00000013795	usb1	89	57.848	Xenopus_tropicalis
ENSSSCG00000002807	USB1	93	50.400	ENSXMAG00000024687	usb1	80	49.593	Xiphophorus_maculatus