EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000002854 (Gene tree)
Gene ID: 100523065
Gene Symbol: POP4
Alias: RPP29
Full Name: POP4 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 13740 bases
Position: chr6:39734518-39748257
Accession: 100523065
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000043499	UPF0086	PF01868.16	7.4e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000046721	POP4-201	5051	XM_003127004	ENSSSCP00000043499	220 (aa)	XP_003127052	A0A287AI04
ENSSSCT00000003155	POP4-202	2645	-	ENSSSCP00000003074	186 (aa)	-	F1RNY8

Gene Model

Click here to download ENSSSCG00000002854's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03008	Ribosome biogenesis in eukaryotes	KEGG
ssc03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000002854's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000002854	POP4	100	89.545	ENSG00000105171	POP4	100	95.833	Homo_sapiens
ENSSSCG00000002854	POP4	97	79.535	ENSAMEG00000003172	-	97	79.535	Ailuropoda_melanoleuca
ENSSSCG00000002854	POP4	99	89.908	ENSAMEG00000018329	-	99	89.908	Ailuropoda_melanoleuca
ENSSSCG00000002854	POP4	93	60.784	ENSACIG00000008358	pop4	93	63.077	Amphilophus_citrinellus
ENSSSCG00000002854	POP4	89	63.452	ENSAOCG00000010116	pop4	96	62.944	Amphiprion_ocellaris
ENSSSCG00000002854	POP4	94	60.577	ENSAPEG00000002829	pop4	87	60.096	Amphiprion_percula
ENSSSCG00000002854	POP4	94	60.577	ENSATEG00000013028	pop4	94	60.096	Anabas_testudineus
ENSSSCG00000002854	POP4	92	73.267	ENSAPLG00000014051	POP4	98	73.267	Anas_platyrhynchos
ENSSSCG00000002854	POP4	100	88.182	ENSANAG00000020295	POP4	100	88.182	Aotus_nancymaae
ENSSSCG00000002854	POP4	93	60.784	ENSACLG00000000526	pop4	88	63.077	Astatotilapia_calliptera
ENSSSCG00000002854	POP4	100	60.000	ENSAMXG00000002899	pop4	100	60.000	Astyanax_mexicanus
ENSSSCG00000002854	POP4	100	95.000	ENSBTAG00000002223	POP4	100	95.000	Bos_taurus
ENSSSCG00000002854	POP4	100	86.425	ENSCJAG00000046750	POP4	100	88.333	Callithrix_jacchus
ENSSSCG00000002854	POP4	83	90.110	ENSCAFG00000007630	POP4	100	90.110	Canis_familiaris
ENSSSCG00000002854	POP4	100	94.091	ENSCHIG00000016743	POP4	100	94.091	Capra_hircus
ENSSSCG00000002854	POP4	100	91.818	ENSTSYG00000003488	POP4	100	91.818	Carlito_syrichta
ENSSSCG00000002854	POP4	99	66.820	ENSCAPG00000011105	POP4	100	66.820	Cavia_aperea
ENSSSCG00000002854	POP4	100	88.182	ENSCPOG00000002992	POP4	100	88.182	Cavia_porcellus
ENSSSCG00000002854	POP4	100	75.909	ENSCCAG00000034244	-	100	75.909	Cebus_capucinus
ENSSSCG00000002854	POP4	100	89.545	ENSCCAG00000020285	-	100	89.545	Cebus_capucinus
ENSSSCG00000002854	POP4	100	90.909	ENSCATG00000036022	POP4	100	97.917	Cercocebus_atys
ENSSSCG00000002854	POP4	100	87.727	ENSCLAG00000013162	POP4	100	87.727	Chinchilla_lanigera
ENSSSCG00000002854	POP4	99	89.908	ENSCSAG00000004868	POP4	100	89.908	Chlorocebus_sabaeus
ENSSSCG00000002854	POP4	99	69.124	ENSCHOG00000002071	POP4	100	69.124	Choloepus_hoffmanni
ENSSSCG00000002854	POP4	100	73.636	ENSCPBG00000016132	POP4	100	73.636	Chrysemys_picta_bellii
ENSSSCG00000002854	POP4	84	33.508	ENSCING00000023871	-	94	33.508	Ciona_intestinalis
ENSSSCG00000002854	POP4	90	92.424	ENSCANG00000005924	POP4	98	92.424	Colobus_angolensis_palliatus
ENSSSCG00000002854	POP4	100	85.000	ENSCGRG00001017185	Pop4	100	85.000	Cricetulus_griseus_chok1gshd
ENSSSCG00000002854	POP4	100	85.000	ENSCGRG00000008155	Pop4	100	85.000	Cricetulus_griseus_crigri
ENSSSCG00000002854	POP4	94	52.885	ENSCSEG00000002946	pop4	94	52.885	Cynoglossus_semilaevis
ENSSSCG00000002854	POP4	98	41.743	ENSCVAG00000018602	POP4	94	41.743	Cyprinodon_variegatus
ENSSSCG00000002854	POP4	100	62.273	ENSDARG00000101472	pop4	100	62.273	Danio_rerio
ENSSSCG00000002854	POP4	100	89.091	ENSDNOG00000047663	POP4	88	89.091	Dasypus_novemcinctus
ENSSSCG00000002854	POP4	78	83.721	ENSDORG00000008577	Pop4	100	83.721	Dipodomys_ordii
ENSSSCG00000002854	POP4	86	34.000	FBgn0035831	CG8038	72	37.838	Drosophila_melanogaster
ENSSSCG00000002854	POP4	99	72.350	ENSETEG00000003607	POP4	100	72.350	Echinops_telfairi
ENSSSCG00000002854	POP4	100	42.081	ENSEBUG00000008575	pop4	100	42.081	Eptatretus_burgeri
ENSSSCG00000002854	POP4	100	42.489	ENSEBUG00000004305	pop4	100	42.060	Eptatretus_burgeri
ENSSSCG00000002854	POP4	91	48.598	ENSEBUG00000010447	pop4	82	48.571	Eptatretus_burgeri
ENSSSCG00000002854	POP4	100	90.385	ENSECAG00000020206	POP4	82	90.385	Equus_caballus
ENSSSCG00000002854	POP4	91	68.500	ENSEEUG00000013109	POP4	100	68.500	Erinaceus_europaeus
ENSSSCG00000002854	POP4	89	65.816	ENSELUG00000019812	pop4	89	65.816	Esox_lucius
ENSSSCG00000002854	POP4	100	91.818	ENSFCAG00000001619	POP4	100	91.818	Felis_catus
ENSSSCG00000002854	POP4	98	70.833	ENSFALG00000000206	POP4	96	70.833	Ficedula_albicollis
ENSSSCG00000002854	POP4	100	88.636	ENSFDAG00000017859	POP4	100	88.636	Fukomys_damarensis
ENSSSCG00000002854	POP4	90	57.500	ENSFHEG00000012745	pop4	90	57.000	Fundulus_heteroclitus
ENSSSCG00000002854	POP4	90	61.692	ENSGMOG00000000335	pop4	99	61.692	Gadus_morhua
ENSSSCG00000002854	POP4	100	69.091	ENSGALG00000041972	POP4	92	69.091	Gallus_gallus
ENSSSCG00000002854	POP4	78	48.851	ENSGAFG00000003571	pop4	96	48.851	Gambusia_affinis
ENSSSCG00000002854	POP4	99	59.193	ENSGACG00000014510	pop4	100	65.217	Gasterosteus_aculeatus
ENSSSCG00000002854	POP4	100	74.091	ENSGAGG00000024544	POP4	79	74.091	Gopherus_agassizii
ENSSSCG00000002854	POP4	99	89.450	ENSGGOG00000038346	POP4	99	89.450	Gorilla_gorilla
ENSSSCG00000002854	POP4	93	60.784	ENSHBUG00000021821	pop4	88	63.077	Haplochromis_burtoni
ENSSSCG00000002854	POP4	99	88.532	ENSHGLG00000015798	POP4	99	88.532	Heterocephalus_glaber_female
ENSSSCG00000002854	POP4	100	88.182	ENSHGLG00100009737	POP4	100	88.182	Heterocephalus_glaber_male
ENSSSCG00000002854	POP4	89	64.103	ENSHCOG00000020937	pop4	88	64.103	Hippocampus_comes
ENSSSCG00000002854	POP4	100	60.000	ENSIPUG00000013652	pop4	100	60.000	Ictalurus_punctatus
ENSSSCG00000002854	POP4	100	91.364	ENSSTOG00000011016	POP4	100	91.364	Ictidomys_tridecemlineatus
ENSSSCG00000002854	POP4	100	90.000	ENSJJAG00000013376	Pop4	100	90.000	Jaculus_jaculus
ENSSSCG00000002854	POP4	98	59.633	ENSKMAG00000012250	pop4	98	59.174	Kryptolebias_marmoratus
ENSSSCG00000002854	POP4	99	53.846	ENSLBEG00000018846	-	99	55.000	Labrus_bergylta
ENSSSCG00000002854	POP4	99	53.846	ENSLBEG00000014139	pop4	99	55.000	Labrus_bergylta
ENSSSCG00000002854	POP4	100	64.545	ENSLACG00000008581	POP4	98	65.438	Latimeria_chalumnae
ENSSSCG00000002854	POP4	100	70.000	ENSLOCG00000005597	pop4	100	70.000	Lepisosteus_oculatus
ENSSSCG00000002854	POP4	100	88.182	ENSLAFG00000000084	POP4	100	88.182	Loxodonta_africana
ENSSSCG00000002854	POP4	100	90.455	ENSMFAG00000029606	POP4	100	90.455	Macaca_fascicularis
ENSSSCG00000002854	POP4	100	88.688	ENSMMUG00000017424	POP4	100	88.688	Macaca_mulatta
ENSSSCG00000002854	POP4	100	88.688	ENSMNEG00000031374	POP4	100	88.688	Macaca_nemestrina
ENSSSCG00000002854	POP4	100	89.545	ENSMLEG00000043454	POP4	100	89.545	Mandrillus_leucophaeus
ENSSSCG00000002854	POP4	85	64.894	ENSMAMG00000011716	pop4	93	62.911	Mastacembelus_armatus
ENSSSCG00000002854	POP4	93	60.784	ENSMZEG00005002360	pop4	88	63.077	Maylandia_zebra
ENSSSCG00000002854	POP4	99	69.725	ENSMGAG00000005337	POP4	97	69.725	Meleagris_gallopavo
ENSSSCG00000002854	POP4	100	88.182	ENSMAUG00000020110	Pop4	100	88.182	Mesocricetus_auratus
ENSSSCG00000002854	POP4	99	85.321	ENSMICG00000035730	POP4	98	85.321	Microcebus_murinus
ENSSSCG00000002854	POP4	94	60.870	ENSMMOG00000015321	pop4	93	61.650	Mola_mola
ENSSSCG00000002854	POP4	98	81.019	ENSMODG00000029406	POP4	94	81.019	Monodelphis_domestica
ENSSSCG00000002854	POP4	95	62.381	ENSMALG00000012571	pop4	95	62.381	Monopterus_albus
ENSSSCG00000002854	POP4	100	84.615	MGP_CAROLIEiJ_G0029600	Pop4	100	84.615	Mus_caroli
ENSSSCG00000002854	POP4	100	84.615	ENSMUSG00000030423	Pop4	100	84.163	Mus_musculus
ENSSSCG00000002854	POP4	100	85.000	MGP_SPRETEiJ_G0030699	Pop4	100	85.000	Mus_spretus
ENSSSCG00000002854	POP4	100	90.000	ENSMPUG00000008041	-	100	90.000	Mustela_putorius_furo
ENSSSCG00000002854	POP4	100	77.376	ENSMPUG00000008063	-	100	77.376	Mustela_putorius_furo
ENSSSCG00000002854	POP4	99	71.233	ENSMLUG00000010774	POP4	99	71.233	Myotis_lucifugus
ENSSSCG00000002854	POP4	57	84.000	ENSMEUG00000003636	-	100	84.000	Notamacropus_eugenii
ENSSSCG00000002854	POP4	91	91.500	ENSOPRG00000004736	POP4	100	91.500	Ochotona_princeps
ENSSSCG00000002854	POP4	99	87.558	ENSODEG00000013025	POP4	100	88.208	Octodon_degus
ENSSSCG00000002854	POP4	89	62.564	ENSONIG00000003458	pop4	87	62.564	Oreochromis_niloticus
ENSSSCG00000002854	POP4	100	90.455	ENSOCUG00000015974	POP4	100	90.455	Oryctolagus_cuniculus
ENSSSCG00000002854	POP4	90	60.302	ENSORLG00000020317	pop4	90	60.302	Oryzias_latipes
ENSSSCG00000002854	POP4	94	58.654	ENSORLG00015011624	pop4	93	58.654	Oryzias_latipes_hsok
ENSSSCG00000002854	POP4	94	60.577	ENSOMEG00000002538	pop4	93	60.096	Oryzias_melastigma
ENSSSCG00000002854	POP4	99	87.156	ENSOGAG00000011168	POP4	99	87.156	Otolemur_garnettii
ENSSSCG00000002854	POP4	100	93.665	ENSOARG00000004041	POP4	100	93.665	Ovis_aries
ENSSSCG00000002854	POP4	100	90.000	ENSPPAG00000040372	POP4	100	90.000	Pan_paniscus
ENSSSCG00000002854	POP4	100	91.818	ENSPPRG00000010502	POP4	100	91.818	Panthera_pardus
ENSSSCG00000002854	POP4	100	91.364	ENSPTIG00000016598	POP4	100	91.364	Panthera_tigris_altaica
ENSSSCG00000002854	POP4	100	90.000	ENSPTRG00000010779	POP4	100	90.000	Pan_troglodytes
ENSSSCG00000002854	POP4	100	90.455	ENSPANG00000008546	POP4	100	90.455	Papio_anubis
ENSSSCG00000002854	POP4	89	69.849	ENSPKIG00000004468	pop4	87	69.697	Paramormyrops_kingsleyae
ENSSSCG00000002854	POP4	100	74.091	ENSPSIG00000015690	POP4	98	78.788	Pelodiscus_sinensis
ENSSSCG00000002854	POP4	90	58.128	ENSPMGG00000008608	pop4	97	58.128	Periophthalmus_magnuspinnatus
ENSSSCG00000002854	POP4	100	85.455	ENSPEMG00000014034	-	96	85.455	Peromyscus_maniculatus_bairdii
ENSSSCG00000002854	POP4	99	72.018	ENSPEMG00000019982	-	100	72.018	Peromyscus_maniculatus_bairdii
ENSSSCG00000002854	POP4	67	67.347	ENSPMAG00000006265	pop4	100	54.545	Petromyzon_marinus
ENSSSCG00000002854	POP4	100	80.909	ENSPCIG00000024738	POP4	95	80.909	Phascolarctos_cinereus
ENSSSCG00000002854	POP4	98	54.839	ENSPFOG00000000925	pop4	98	54.839	Poecilia_formosa
ENSSSCG00000002854	POP4	92	57.692	ENSPLAG00000003161	pop4	94	57.692	Poecilia_latipinna
ENSSSCG00000002854	POP4	98	54.839	ENSPMEG00000002475	pop4	98	54.839	Poecilia_mexicana
ENSSSCG00000002854	POP4	92	57.635	ENSPREG00000022403	pop4	88	57.635	Poecilia_reticulata
ENSSSCG00000002854	POP4	100	90.455	ENSPPYG00000009805	POP4	100	90.455	Pongo_abelii
ENSSSCG00000002854	POP4	99	78.539	ENSPCAG00000007737	POP4	99	78.539	Procavia_capensis
ENSSSCG00000002854	POP4	100	90.000	ENSPCOG00000018055	POP4	100	90.000	Propithecus_coquereli
ENSSSCG00000002854	POP4	100	86.818	ENSPVAG00000006069	POP4	100	86.818	Pteropus_vampyrus
ENSSSCG00000002854	POP4	93	61.275	ENSPNYG00000020038	pop4	88	63.590	Pundamilia_nyererei
ENSSSCG00000002854	POP4	100	61.818	ENSPNAG00000005591	pop4	100	61.818	Pygocentrus_nattereri
ENSSSCG00000002854	POP4	100	85.973	ENSRNOG00000027646	Pop4	100	85.973	Rattus_norvegicus
ENSSSCG00000002854	POP4	80	85.143	ENSRBIG00000044769	POP4	89	88.406	Rhinopithecus_bieti
ENSSSCG00000002854	POP4	100	90.000	ENSRROG00000028903	POP4	100	90.000	Rhinopithecus_roxellana
ENSSSCG00000002854	POP4	57	35.252	YBR257W	-	50	35.252	Saccharomyces_cerevisiae
ENSSSCG00000002854	POP4	100	89.091	ENSSBOG00000032445	POP4	100	89.091	Saimiri_boliviensis_boliviensis
ENSSSCG00000002854	POP4	99	80.734	ENSSHAG00000016888	POP4	99	80.734	Sarcophilus_harrisii
ENSSSCG00000002854	POP4	93	68.293	ENSSFOG00015014556	pop4	91	67.157	Scleropages_formosus
ENSSSCG00000002854	POP4	94	62.019	ENSSMAG00000016611	pop4	99	62.559	Scophthalmus_maximus
ENSSSCG00000002854	POP4	94	61.244	ENSSDUG00000019865	pop4	84	61.058	Seriola_dumerili
ENSSSCG00000002854	POP4	94	61.058	ENSSLDG00000001763	pop4	93	60.577	Seriola_lalandi_dorsalis
ENSSSCG00000002854	POP4	99	88.940	ENSSARG00000004748	POP4	100	88.940	Sorex_araneus
ENSSSCG00000002854	POP4	94	62.500	ENSSPAG00000014364	pop4	93	62.019	Stegastes_partitus
ENSSSCG00000002854	POP4	90	74.747	ENSTGUG00000008953	POP4	99	74.747	Taeniopygia_guttata
ENSSSCG00000002854	POP4	92	62.562	ENSTNIG00000006401	pop4	100	62.439	Tetraodon_nigroviridis
ENSSSCG00000002854	POP4	100	88.688	ENSTBEG00000002194	POP4	100	90.498	Tupaia_belangeri
ENSSSCG00000002854	POP4	100	92.273	ENSTTRG00000005882	POP4	100	92.273	Tursiops_truncatus
ENSSSCG00000002854	POP4	100	90.000	ENSUAMG00000003049	-	100	90.000	Ursus_americanus
ENSSSCG00000002854	POP4	100	90.000	ENSUMAG00000007522	-	100	90.000	Ursus_maritimus
ENSSSCG00000002854	POP4	92	89.109	ENSVVUG00000016876	-	71	89.109	Vulpes_vulpes
ENSSSCG00000002854	POP4	98	67.130	ENSXETG00000017598	pop4	98	67.130	Xenopus_tropicalis
ENSSSCG00000002854	POP4	92	57.561	ENSXCOG00000017695	pop4	88	57.561	Xiphophorus_couchianus
ENSSSCG00000002854	POP4	92	57.561	ENSXMAG00000013862	pop4	88	57.561	Xiphophorus_maculatus