EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000002905 (Gene tree)
Gene ID: 100520432
Gene Symbol: RBM42
Alias: MGC10433
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 8702 bases
Position: chr6:45074527-45083228
Accession: 100520432
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000051831	RRM_1	PF00076.22	8.8e-18	1	1
ENSSSCP00000003129	RRM_1	PF00076.22	9.6e-18	1	1
ENSSSCP00000036397	RRM_1	PF00076.22	1.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000050822	RBM42-202	1700	XM_003127066	ENSSSCP00000036397	477 (aa)	XP_003127114	A0A286ZXI3
ENSSSCT00000060142	RBM42-203	1495	XM_021097183	ENSSSCP00000051831	423 (aa)	XP_020952842	A0A287B5V0
ENSSSCT00000003210	RBM42-201	1711	XM_003127065	ENSSSCP00000003129	448 (aa)	XP_003127113	F1RM56

Gene Model

Click here to download ENSSSCG00000002905's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000002905's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000002905	RBM42	100	97.418	ENSG00000126254	RBM42	100	100.000	Homo_sapiens
ENSSSCG00000002905	RBM42	100	97.077	ENSAMEG00000000524	RBM42	100	97.077	Ailuropoda_melanoleuca
ENSSSCG00000002905	RBM42	100	98.345	ENSANAG00000027537	RBM42	100	100.000	Aotus_nancymaae
ENSSSCG00000002905	RBM42	100	97.484	ENSBTAG00000013440	RBM42	100	97.484	Bos_taurus
ENSSSCG00000002905	RBM42	100	98.438	ENSCJAG00000010220	RBM42	100	100.000	Callithrix_jacchus
ENSSSCG00000002905	RBM42	100	90.776	ENSCAFG00020018628	RBM42	96	100.000	Canis_lupus_dingo
ENSSSCG00000002905	RBM42	100	97.991	ENSCHIG00000009518	RBM42	100	97.991	Capra_hircus
ENSSSCG00000002905	RBM42	100	97.170	ENSTSYG00000014688	RBM42	100	100.000	Carlito_syrichta
ENSSSCG00000002905	RBM42	81	97.927	ENSCAPG00000009566	RBM42	99	97.927	Cavia_aperea
ENSSSCG00000002905	RBM42	100	97.768	ENSCPOG00000012365	RBM42	99	97.768	Cavia_porcellus
ENSSSCG00000002905	RBM42	100	98.345	ENSCCAG00000034440	RBM42	100	100.000	Cebus_capucinus
ENSSSCG00000002905	RBM42	100	97.339	ENSCATG00000041924	RBM42	100	100.000	Cercocebus_atys
ENSSSCG00000002905	RBM42	100	97.098	ENSCLAG00000012865	RBM42	99	97.098	Chinchilla_lanigera
ENSSSCG00000002905	RBM42	100	97.339	ENSCSAG00000004422	RBM42	100	97.339	Chlorocebus_sabaeus
ENSSSCG00000002905	RBM42	89	98.684	ENSCANG00000030272	RBM42	100	87.631	Colobus_angolensis_palliatus
ENSSSCG00000002905	RBM42	100	96.429	ENSCGRG00001018540	Rbm42	99	96.429	Cricetulus_griseus_chok1gshd
ENSSSCG00000002905	RBM42	100	96.009	ENSDNOG00000037397	RBM42	100	96.009	Dasypus_novemcinctus
ENSSSCG00000002905	RBM42	100	97.098	ENSDORG00000013001	Rbm42	99	97.098	Dipodomys_ordii
ENSSSCG00000002905	RBM42	80	88.406	ENSETEG00000007878	RBM42	74	88.406	Echinops_telfairi
ENSSSCG00000002905	RBM42	100	97.768	ENSEASG00005001074	RBM42	100	97.768	Equus_asinus_asinus
ENSSSCG00000002905	RBM42	100	97.768	ENSECAG00000018215	RBM42	100	97.768	Equus_caballus
ENSSSCG00000002905	RBM42	100	97.636	ENSFCAG00000006376	RBM42	100	100.000	Felis_catus
ENSSSCG00000002905	RBM42	100	96.222	ENSFDAG00000007440	RBM42	99	96.222	Fukomys_damarensis
ENSSSCG00000002905	RBM42	92	58.592	ENSGAGG00000014805	RBM42	50	92.086	Gopherus_agassizii
ENSSSCG00000002905	RBM42	100	97.561	ENSGGOG00000009972	RBM42	100	100.000	Gorilla_gorilla
ENSSSCG00000002905	RBM42	98	95.444	ENSHGLG00000008418	RBM42	99	95.312	Heterocephalus_glaber_female
ENSSSCG00000002905	RBM42	98	95.444	ENSHGLG00100018667	RBM42	99	95.312	Heterocephalus_glaber_male
ENSSSCG00000002905	RBM42	100	97.545	ENSSTOG00000013050	RBM42	99	97.545	Ictidomys_tridecemlineatus
ENSSSCG00000002905	RBM42	100	95.982	ENSJJAG00000010421	Rbm42	99	95.982	Jaculus_jaculus
ENSSSCG00000002905	RBM42	98	92.521	ENSLAFG00000014993	RBM42	99	90.776	Loxodonta_africana
ENSSSCG00000002905	RBM42	100	97.339	ENSMFAG00000002758	RBM42	100	100.000	Macaca_fascicularis
ENSSSCG00000002905	RBM42	100	97.083	ENSMMUG00000018954	RBM42	100	100.000	Macaca_mulatta
ENSSSCG00000002905	RBM42	100	97.339	ENSMNEG00000030009	RBM42	100	100.000	Macaca_nemestrina
ENSSSCG00000002905	RBM42	100	97.118	ENSMLEG00000036119	RBM42	100	100.000	Mandrillus_leucophaeus
ENSSSCG00000002905	RBM42	100	97.872	ENSMICG00000009880	RBM42	100	100.000	Microcebus_murinus
ENSSSCG00000002905	RBM42	100	95.759	ENSMOCG00000000405	Rbm42	99	95.759	Microtus_ochrogaster
ENSSSCG00000002905	RBM42	100	96.652	MGP_CAROLIEiJ_G0029536	Rbm42	99	96.652	Mus_caroli
ENSSSCG00000002905	RBM42	100	96.652	ENSMUSG00000036733	Rbm42	99	96.652	Mus_musculus
ENSSSCG00000002905	RBM42	100	96.652	MGP_PahariEiJ_G0012770	Rbm42	99	96.652	Mus_pahari
ENSSSCG00000002905	RBM42	100	96.652	MGP_SPRETEiJ_G0030632	Rbm42	99	96.652	Mus_spretus
ENSSSCG00000002905	RBM42	100	97.991	ENSMPUG00000006288	RBM42	100	97.991	Mustela_putorius_furo
ENSSSCG00000002905	RBM42	100	96.855	ENSMLUG00000011334	RBM42	100	96.855	Myotis_lucifugus
ENSSSCG00000002905	RBM42	100	95.982	ENSNGAG00000019698	Rbm42	99	95.982	Nannospalax_galili
ENSSSCG00000002905	RBM42	85	85.519	ENSNLEG00000011272	-	94	91.341	Nomascus_leucogenys
ENSSSCG00000002905	RBM42	96	81.385	ENSMEUG00000016300	RBM42	100	80.453	Notamacropus_eugenii
ENSSSCG00000002905	RBM42	100	94.130	ENSOPRG00000001229	RBM42	100	91.824	Ochotona_princeps
ENSSSCG00000002905	RBM42	100	97.321	ENSODEG00000013705	RBM42	99	97.321	Octodon_degus
ENSSSCG00000002905	RBM42	100	96.896	ENSOCUG00000003337	RBM42	100	96.896	Oryctolagus_cuniculus
ENSSSCG00000002905	RBM42	100	96.436	ENSOGAG00000004144	RBM42	100	96.436	Otolemur_garnettii
ENSSSCG00000002905	RBM42	98	89.079	ENSOARG00000004926	RBM42	98	92.017	Ovis_aries
ENSSSCG00000002905	RBM42	100	97.991	ENSPPAG00000037315	RBM42	100	100.000	Pan_paniscus
ENSSSCG00000002905	RBM42	100	97.636	ENSPPRG00000016784	RBM42	100	100.000	Panthera_pardus
ENSSSCG00000002905	RBM42	100	97.163	ENSPTIG00000019270	RBM42	100	100.000	Panthera_tigris_altaica
ENSSSCG00000002905	RBM42	100	97.561	ENSPTRG00000010852	RBM42	100	100.000	Pan_troglodytes
ENSSSCG00000002905	RBM42	100	97.183	ENSPANG00000017032	RBM42	100	100.000	Papio_anubis
ENSSSCG00000002905	RBM42	100	96.875	ENSPEMG00000012065	Rbm42	99	96.875	Peromyscus_maniculatus_bairdii
ENSSSCG00000002905	RBM42	100	96.289	ENSPPYG00000009871	RBM42	100	96.289	Pongo_abelii
ENSSSCG00000002905	RBM42	93	95.724	ENSPCAG00000013053	RBM42	100	81.551	Procavia_capensis
ENSSSCG00000002905	RBM42	100	97.872	ENSPCOG00000026433	-	100	100.000	Propithecus_coquereli
ENSSSCG00000002905	RBM42	97	75.581	ENSPCOG00000020672	RBM42	81	97.898	Propithecus_coquereli
ENSSSCG00000002905	RBM42	100	97.065	ENSPVAG00000012815	RBM42	100	97.065	Pteropus_vampyrus
ENSSSCG00000002905	RBM42	100	96.875	ENSRNOG00000024278	Rbm42	99	96.875	Rattus_norvegicus
ENSSSCG00000002905	RBM42	100	97.339	ENSRBIG00000007566	RBM42	100	100.000	Rhinopithecus_bieti
ENSSSCG00000002905	RBM42	100	97.991	ENSRROG00000042313	RBM42	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000002905	RBM42	90	98.421	ENSSBOG00000030666	RBM42	100	98.522	Saimiri_boliviensis_boliviensis
ENSSSCG00000002905	RBM42	100	86.875	ENSSARG00000010724	RBM42	100	86.875	Sorex_araneus
ENSSSCG00000002905	RBM42	100	97.991	ENSUAMG00000020711	RBM42	100	97.991	Ursus_americanus
ENSSSCG00000002905	RBM42	100	97.694	ENSUMAG00000020223	RBM42	100	97.694	Ursus_maritimus
ENSSSCG00000002905	RBM42	100	97.768	ENSVVUG00000015117	RBM42	100	97.768	Vulpes_vulpes