EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSSCG00000003660 (Gene tree)
Gene ID
100515840
Gene Symbol
-
Alias
-
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Sus_scrofa
Status
putative
Strand
Minus strand
Length
19287 bases
Position
chr6:95379777-95399063
Accession
100515840
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSSCP00000003965PABPPF00658.182.7e-3111
ENSSSCP00000031491PABPPF00658.183e-3111
ENSSSCP00000003965RRM_5PF13893.65.1e-0912
ENSSSCP00000003965RRM_5PF13893.65.1e-0922
ENSSSCP00000031491RRM_5PF13893.66.5e-0912
ENSSSCP00000031491RRM_5PF13893.66.5e-0922
ENSSSCP00000003965RRM_1PF00076.225.9e-9214
ENSSSCP00000003965RRM_1PF00076.225.9e-9224
ENSSSCP00000003965RRM_1PF00076.225.9e-9234
ENSSSCP00000003965RRM_1PF00076.225.9e-9244
ENSSSCP00000031491RRM_1PF00076.227.6e-9214
ENSSSCP00000031491RRM_1PF00076.227.6e-9224
ENSSSCP00000031491RRM_1PF00076.227.6e-9234
ENSSSCP00000031491RRM_1PF00076.227.6e-9244
ENSSSCP00000058510RRM_1PF00076.223e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSSCT00000036802-3130-ENSSSCP00000058510272 (aa)-A0A287BQ02
ENSSSCT00000004056-2763XM_005665252ENSSSCP00000003965631 (aa)XP_005665309F1SV06
ENSSSCT00000056756-4820XM_003127813ENSSSCP00000031491660 (aa)XP_003127861A0A286ZIZ4
Gene Model
Click here to download ENSSSCG00000003660's gene model file
Pathways
Pathway IDPathway NameSource
ssc03013RNA transportKEGG
ssc03015mRNA surveillance pathwayKEGG
ssc03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000003660's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSSCG00000003660-5837.500ENSSSCG00000011121-6237.500
ENSSSCG00000003660-9544.081ENSSSCG00000036199-8364.444
ENSSSCG00000003660-6168.919ENSSSCG00000009067PABPC4L9968.919
ENSSSCG00000003660-5730.370ENSSSCG00000023409TIA17030.370
ENSSSCG00000003660-6130.625ENSSSCG00000037291ELAVL48930.625
ENSSSCG00000003660-5730.220ENSSSCG00000010685-9531.507
ENSSSCG00000003660-5877.041ENSSSCG00000032167-9877.041
ENSSSCG00000003660-8950.505ENSSSCG00000036170-9650.505
ENSSSCG00000003660-5867.978ENSSSCG00000040194PABPC59667.769
ENSSSCG00000003660-5931.579ENSSSCG00000005130ELAVL28931.579
ENSSSCG00000003660-9978.627ENSSSCG00000006063PABPC19978.471
ENSSSCG00000003660-5877.041ENSSSCG00000036336-9877.041
ENSSSCG00000003660-5830.526ENSSSCG00000013592ELAVL19530.526
ENSSSCG00000003660-9767.695ENSSSCG00000007382PABPC1L9967.532
ENSSSCG00000003660-5333.735ENSSSCG00000009868RBM195131.579
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSSCG00000003660-10099.091ENSG00000090621PABPC4100100.000Homo_sapiens
ENSSSCG00000003660-9983.043ENSAPOG00000001161pabpc410082.866Acanthochromis_polyacanthus
ENSSSCG00000003660-9857.235ENSAMEG00000015083-9956.913Ailuropoda_melanoleuca
ENSSSCG00000003660-10099.242ENSAMEG00000011535-10099.242Ailuropoda_melanoleuca
ENSSSCG00000003660-10083.594ENSACIG00000023343pabpc410084.219Amphilophus_citrinellus
ENSSSCG00000003660-9983.518ENSAOCG00000021529pabpc410083.750Amphiprion_ocellaris
ENSSSCG00000003660-9983.518ENSAPEG00000019196pabpc410083.750Amphiprion_percula
ENSSSCG00000003660-9982.622ENSATEG00000007402pabpc410082.071Anabas_testudineus
ENSSSCG00000003660-9991.587ENSAPLG00000009729-10091.587Anas_platyrhynchos
ENSSSCG00000003660-9989.982ENSACAG00000002544PABPC410089.982Anolis_carolinensis
ENSSSCG00000003660-10099.242ENSANAG00000025079PABPC410099.242Aotus_nancymaae
ENSSSCG00000003660-10083.125ENSACLG00000019558pabpc410083.204Astatotilapia_calliptera
ENSSSCG00000003660-9979.081ENSAMXG00000018779pabpc49979.873Astyanax_mexicanus
ENSSSCG00000003660-5786.826ENSBTAG00000048536-9886.826Bos_taurus
ENSSSCG00000003660-10096.974ENSBTAG00000017125PABPC410096.974Bos_taurus
ENSSSCG00000003660-8985.200ENSCJAG00000045953-9289.712Callithrix_jacchus
ENSSSCG00000003660-10098.788ENSCJAG00000002512-10098.788Callithrix_jacchus
ENSSSCG00000003660-10099.525ENSCAFG00000003081PABPC410099.525Canis_familiaris
ENSSSCG00000003660-10099.394ENSCAFG00020004161PABPC410099.394Canis_lupus_dingo
ENSSSCG00000003660-10099.545ENSCHIG00000019398-10099.545Capra_hircus
ENSSSCG00000003660-10076.818ENSCHIG00000023385-10076.818Capra_hircus
ENSSSCG00000003660-10099.091ENSTSYG00000006532PABPC410099.091Carlito_syrichta
ENSSSCG00000003660-9999.088ENSCAPG00000015984PABPC410099.088Cavia_aperea
ENSSSCG00000003660-10099.091ENSCPOG00000009552PABPC410099.091Cavia_porcellus
ENSSSCG00000003660-10098.939ENSCCAG00000037306PABPC410098.939Cebus_capucinus
ENSSSCG00000003660-10099.242ENSCATG00000042164PABPC410099.242Cercocebus_atys
ENSSSCG00000003660-10098.788ENSCLAG00000011899PABPC410098.788Chinchilla_lanigera
ENSSSCG00000003660-10099.242ENSCSAG00000001135PABPC410099.242Chlorocebus_sabaeus
ENSSSCG00000003660-8697.625ENSCHOG00000005327PABPC48197.625Choloepus_hoffmanni
ENSSSCG00000003660-9991.905ENSCPBG00000001038PABPC410091.905Chrysemys_picta_bellii
ENSSSCG00000003660-9999.078ENSCANG00000034177PABPC410099.078Colobus_angolensis_palliatus
ENSSSCG00000003660-10097.590ENSCGRG00001018166Pabpc410097.590Cricetulus_griseus_chok1gshd
ENSSSCG00000003660-9995.267ENSCGRG00000009777Pabpc410095.267Cricetulus_griseus_crigri
ENSSSCG00000003660-10082.344ENSCSEG00000000130pabpc410082.737Cynoglossus_semilaevis
ENSSSCG00000003660-9983.625ENSCVAG00000019246pabpc410083.861Cyprinodon_variegatus
ENSSSCG00000003660-9985.079ENSDARG00000059259pabpc410085.855Danio_rerio
ENSSSCG00000003660-9999.464ENSDNOG00000018444-10099.464Dasypus_novemcinctus
ENSSSCG00000003660-10096.970ENSDORG00000011581Pabpc410096.970Dipodomys_ordii
ENSSSCG00000003660-100100.000ENSETEG00000018453-84100.000Echinops_telfairi
ENSSSCG00000003660-8970.588ENSETEG00000009172-9965.018Echinops_telfairi
ENSSSCG00000003660-9976.899ENSEBUG00000000992pabpc49980.346Eptatretus_burgeri
ENSSSCG00000003660-9776.737ENSEBUG00000013782pabpc49975.949Eptatretus_burgeri
ENSSSCG00000003660-10099.545ENSEASG00005014119PABPC410099.545Equus_asinus_asinus
ENSSSCG00000003660-10099.545ENSECAG00000009396PABPC410099.545Equus_caballus
ENSSSCG00000003660-10095.909ENSEEUG00000002962PABPC410095.909Erinaceus_europaeus
ENSSSCG00000003660-9983.758ENSELUG00000003195pabpc49984.202Esox_lucius
ENSSSCG00000003660-10099.545ENSFCAG00000015254-10099.545Felis_catus
ENSSSCG00000003660-9991.111ENSFALG00000000543PABPC410091.111Ficedula_albicollis
ENSSSCG00000003660-8680.851ENSFDAG00000010581-10063.361Fukomys_damarensis
ENSSSCG00000003660-10099.394ENSFDAG00000020016-10099.394Fukomys_damarensis
ENSSSCG00000003660-10083.412ENSFHEG00000007548pabpc49391.031Fundulus_heteroclitus
ENSSSCG00000003660-9982.808ENSGMOG00000019025pabpc49983.438Gadus_morhua
ENSSSCG00000003660-9991.905ENSGALG00000003800PABPC410091.905Gallus_gallus
ENSSSCG00000003660-10082.889ENSGAFG00000018195pabpc49895.556Gambusia_affinis
ENSSSCG00000003660-10081.591ENSGACG00000007179pabpc410082.215Gasterosteus_aculeatus
ENSSSCG00000003660-9991.746ENSGAGG00000001888PABPC410091.746Gopherus_agassizii
ENSSSCG00000003660-10099.091ENSGGOG00000004002PABPC410099.091Gorilla_gorilla
ENSSSCG00000003660-10083.281ENSHBUG00000020206pabpc410083.359Haplochromis_burtoni
ENSSSCG00000003660-10099.242ENSHGLG00000011162PABPC410099.242Heterocephalus_glaber_female
ENSSSCG00000003660-10099.208ENSHGLG00100001580PABPC410099.208Heterocephalus_glaber_male
ENSSSCG00000003660-10082.316ENSHCOG00000012694pabpc410082.942Hippocampus_comes
ENSSSCG00000003660-9883.307ENSIPUG00000016620pabpc49983.333Ictalurus_punctatus
ENSSSCG00000003660-10096.818ENSSTOG00000010416PABPC410096.818Ictidomys_tridecemlineatus
ENSSSCG00000003660-10095.000ENSJJAG00000007781Pabpc410095.000Jaculus_jaculus
ENSSSCG00000003660-9991.076ENSKMAG00000013597pabpc49982.188Kryptolebias_marmoratus
ENSSSCG00000003660-10082.426ENSLBEG00000013654pabpc410082.143Labrus_bergylta
ENSSSCG00000003660-9988.170ENSLACG00000011907PABPC410088.170Latimeria_chalumnae
ENSSSCG00000003660-9985.669ENSLOCG00000001877pabpc49986.457Lepisosteus_oculatus
ENSSSCG00000003660-10099.394ENSLAFG00000000151PABPC410099.394Loxodonta_africana
ENSSSCG00000003660-10099.242ENSMFAG00000041481PABPC410099.242Macaca_fascicularis
ENSSSCG00000003660-10099.242ENSMMUG00000007497PABPC410099.242Macaca_mulatta
ENSSSCG00000003660-10099.091ENSMNEG00000043054PABPC410099.091Macaca_nemestrina
ENSSSCG00000003660-10099.242ENSMLEG00000040716PABPC410099.242Mandrillus_leucophaeus
ENSSSCG00000003660-9982.884ENSMAMG00000010025pabpc49982.059Mastacembelus_armatus
ENSSSCG00000003660-10082.969ENSMZEG00005006141pabpc410083.048Maylandia_zebra
ENSSSCG00000003660-9988.075ENSMGAG00000005408PABPC410088.075Meleagris_gallopavo
ENSSSCG00000003660-7795.413ENSMAUG00000019763-8495.413Mesocricetus_auratus
ENSSSCG00000003660-7689.423ENSMAUG00000001295-9789.423Mesocricetus_auratus
ENSSSCG00000003660-5781.287ENSMAUG00000004089-9281.287Mesocricetus_auratus
ENSSSCG00000003660-8798.283ENSMICG00000016633-10096.263Microcebus_murinus
ENSSSCG00000003660-8699.142ENSMICG00000036729-10085.080Microcebus_murinus
ENSSSCG00000003660-10097.892ENSMOCG00000006763Pabpc410097.892Microtus_ochrogaster
ENSSSCG00000003660-10080.503ENSMMOG00000002363pabpc49981.790Mola_mola
ENSSSCG00000003660-9889.660ENSMODG00000017657-10089.242Monodelphis_domestica
ENSSSCG00000003660-5974.011ENSMODG00000018051-9174.011Monodelphis_domestica
ENSSSCG00000003660-9982.780ENSMALG00000011017pabpc410082.481Monopterus_albus
ENSSSCG00000003660-9984.068MGP_CAROLIEiJ_G0024864-10084.068Mus_caroli
ENSSSCG00000003660-10097.879MGP_CAROLIEiJ_G0026435-10099.291Mus_caroli
ENSSSCG00000003660-10098.333ENSMUSG00000011257Pabpc410099.405Mus_musculus
ENSSSCG00000003660-9998.003MGP_PahariEiJ_G0028765Pabpc4100100.000Mus_pahari
ENSSSCG00000003660-8797.468MGP_SPRETEiJ_G0027415Pabpc410099.291Mus_spretus
ENSSSCG00000003660-10099.545ENSMPUG00000014414-10099.545Mustela_putorius_furo
ENSSSCG00000003660-9553.477ENSMPUG00000006836-10053.311Mustela_putorius_furo
ENSSSCG00000003660-10096.672ENSMLUG00000012068PABPC410096.672Myotis_lucifugus
ENSSSCG00000003660-10096.970ENSNGAG00000018292Pabpc410096.970Nannospalax_galili
ENSSSCG00000003660-6786.441ENSNBRG00000010047-7586.441Neolamprologus_brichardi
ENSSSCG00000003660-5992.788ENSNBRG00000009708pabpc49892.788Neolamprologus_brichardi
ENSSSCG00000003660-10099.208ENSNLEG00000011928PABPC410099.208Nomascus_leucogenys
ENSSSCG00000003660-8598.526ENSOPRG00000011984PABPC48798.526Ochotona_princeps
ENSSSCG00000003660-10098.485ENSODEG00000006592-10098.485Octodon_degus
ENSSSCG00000003660-5385.714ENSODEG00000013457-10085.714Octodon_degus
ENSSSCG00000003660-9989.733ENSODEG00000017434-10089.409Octodon_degus
ENSSSCG00000003660-10083.281ENSONIG00000008176pabpc410083.906Oreochromis_niloticus
ENSSSCG00000003660-9991.429ENSOANG00000010001PABPC410091.429Ornithorhynchus_anatinus
ENSSSCG00000003660-9698.892ENSOCUG00000000562PABPC48898.892Oryctolagus_cuniculus
ENSSSCG00000003660-9991.049ENSORLG00000017479pabpc49991.049Oryzias_latipes
ENSSSCG00000003660-9991.049ENSORLG00020018644pabpc49991.049Oryzias_latipes_hni
ENSSSCG00000003660-9991.049ENSORLG00015015042pabpc49991.049Oryzias_latipes_hsok
ENSSSCG00000003660-9983.201ENSOMEG00000014410pabpc49983.468Oryzias_melastigma
ENSSSCG00000003660-10096.833ENSOGAG00000004067PABPC410096.833Otolemur_garnettii
ENSSSCG00000003660-10099.545ENSOARG00000020060PABPC410099.545Ovis_aries
ENSSSCG00000003660-10099.091ENSPPAG00000043625PABPC410099.091Pan_paniscus
ENSSSCG00000003660-10099.545ENSPPRG00000024727PABPC410099.545Panthera_pardus
ENSSSCG00000003660-10099.545ENSPTIG00000005829PABPC410099.545Panthera_tigris_altaica
ENSSSCG00000003660-10099.091ENSPTRG00000000573PABPC410099.091Pan_troglodytes
ENSSSCG00000003660-10099.394ENSPANG00000009484PABPC410099.394Papio_anubis
ENSSSCG00000003660-9984.968ENSPKIG00000025356pabpc49985.466Paramormyrops_kingsleyae
ENSSSCG00000003660-9992.063ENSPSIG00000016892PABPC410092.063Pelodiscus_sinensis
ENSSSCG00000003660-10081.732ENSPMGG00000009073pabpc49980.818Periophthalmus_magnuspinnatus
ENSSSCG00000003660-10097.424ENSPEMG00000023569-9997.424Peromyscus_maniculatus_bairdii
ENSSSCG00000003660-10091.061ENSPEMG00000024193-9991.061Peromyscus_maniculatus_bairdii
ENSSSCG00000003660-8973.484ENSPMAG00000002836pabpc410074.003Petromyzon_marinus
ENSSSCG00000003660-9571.107ENSPMAG00000007885pabpc410069.625Petromyzon_marinus
ENSSSCG00000003660-9894.033ENSPCIG00000020674PABPC410094.033Phascolarctos_cinereus
ENSSSCG00000003660-10082.786ENSPFOG00000002682pabpc410082.919Poecilia_formosa
ENSSSCG00000003660-10082.629ENSPLAG00000010112pabpc410083.333Poecilia_latipinna
ENSSSCG00000003660-9983.307ENSPMEG00000019739pabpc410083.075Poecilia_mexicana
ENSSSCG00000003660-10083.447ENSPREG00000001589pabpc410083.333Poecilia_reticulata
ENSSSCG00000003660-10099.091ENSPPYG00000001506PABPC410099.091Pongo_abelii
ENSSSCG00000003660-10094.545ENSPCAG00000003341PABPC410094.545Procavia_capensis
ENSSSCG00000003660-10099.244ENSPCOG00000023725-10099.244Propithecus_coquereli
ENSSSCG00000003660-9981.664ENSPCOG00000025882-9594.059Propithecus_coquereli
ENSSSCG00000003660-9999.328ENSPVAG00000002187PABPC410099.328Pteropus_vampyrus
ENSSSCG00000003660-10083.125ENSPNYG00000006134pabpc410083.204Pundamilia_nyererei
ENSSSCG00000003660-10083.412ENSPNAG00000024355pabpc410084.038Pygocentrus_nattereri
ENSSSCG00000003660-10093.788ENSRNOG00000028592AABR07035074.110093.788Rattus_norvegicus
ENSSSCG00000003660-10095.909ENSRNOG00000015642Pabpc410095.909Rattus_norvegicus
ENSSSCG00000003660-10099.242ENSRBIG00000039761PABPC410099.242Rhinopithecus_bieti
ENSSSCG00000003660-10099.242ENSRROG00000033355PABPC410099.242Rhinopithecus_roxellana
ENSSSCG00000003660-10099.091ENSSBOG00000026193PABPC410099.091Saimiri_boliviensis_boliviensis
ENSSSCG00000003660-9892.718ENSSHAG00000018139PABPC410092.222Sarcophilus_harrisii
ENSSSCG00000003660-9985.878ENSSFOG00015023514pabpc49985.878Scleropages_formosus
ENSSSCG00000003660-9982.437ENSSMAG00000009007pabpc49982.104Scophthalmus_maximus
ENSSSCG00000003660-9982.726ENSSDUG00000012683pabpc49588.046Seriola_dumerili
ENSSSCG00000003660-9982.726ENSSLDG00000013025pabpc410082.969Seriola_lalandi_dorsalis
ENSSSCG00000003660-10091.818ENSSARG00000000310PABPC410091.818Sorex_araneus
ENSSSCG00000003660-9990.000ENSSPUG00000003204PABPC410090.000Sphenodon_punctatus
ENSSSCG00000003660-9983.043ENSSPAG00000009252pabpc49990.359Stegastes_partitus
ENSSSCG00000003660-9987.746ENSTGUG00000001266PABPC410087.746Taeniopygia_guttata
ENSSSCG00000003660-10082.075ENSTRUG00000005907pabpc49982.316Takifugu_rubripes
ENSSSCG00000003660-10078.233ENSTNIG00000016902pabpc49978.213Tetraodon_nigroviridis
ENSSSCG00000003660-9988.067ENSTBEG00000009035PABPC410088.067Tupaia_belangeri
ENSSSCG00000003660-8799.156ENSTTRG00000014340PABPC410087.731Tursiops_truncatus
ENSSSCG00000003660-10099.366ENSUAMG00000000303PABPC410099.366Ursus_americanus
ENSSSCG00000003660-10099.242ENSUMAG00000019585PABPC410099.286Ursus_maritimus
ENSSSCG00000003660-8498.582ENSVPAG00000010041PABPC47798.582Vicugna_pacos
ENSSSCG00000003660-10099.525ENSVVUG00000005215PABPC410099.525Vulpes_vulpes
ENSSSCG00000003660-9983.016ENSXETG00000010946pabpc410083.016Xenopus_tropicalis
ENSSSCG00000003660-6197.024ENSXETG00000027221-10097.024Xenopus_tropicalis
ENSSSCG00000003660-9981.109ENSXCOG00000013190pabpc49694.118Xiphophorus_couchianus
ENSSSCG00000003660-10082.942ENSXMAG00000019007pabpc410083.178Xiphophorus_maculatus

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