EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000003701 (Gene tree)
Gene ID: 100524872
Gene Symbol: SNRPD1
Alias: HsT2456|SNRPD|Sm-D1
Full Name: small nuclear ribonucleoprotein D1 polypeptide
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Plus strand
Length: 13593 bases
Position: chr6:106798252-106811844
Accession: 100524872
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000004008	LSM	PF01423.22	1e-18	1	1
ENSSSCP00000043551	LSM	PF01423.22	2.3e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000041907	SNRPD1-202	2622	XM_005653404	ENSSSCP00000043551	112 (aa)	XP_005653461	A0A287AHT5
ENSSSCT00000004100	SNRPD1-201	2594	XM_003127854	ENSSSCP00000004008	119 (aa)	XP_003127902	F2Z5G9

Gene Model

Click here to download ENSSSCG00000003701's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03040	Spliceosome	KEGG
ssc05322	Systemic lupus erythematosus	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000003701's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000003701	SNRPD1	63	30.667	ENSSSCG00000038916	LSM10	61	31.081

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000003701	SNRPD1	100	100.000	ENSG00000167088	SNRPD1	100	100.000	Homo_sapiens
ENSSSCG00000003701	SNRPD1	100	96.639	ENSAPOG00000019446	snrpd1	65	96.639	Acanthochromis_polyacanthus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSAMEG00000002576	SNRPD1	100	98.291	Ailuropoda_melanoleuca
ENSSSCG00000003701	SNRPD1	100	96.429	ENSACIG00000011263	snrpd1	100	96.429	Amphilophus_citrinellus
ENSSSCG00000003701	SNRPD1	100	96.639	ENSAOCG00000007406	snrpd1	100	96.639	Amphiprion_ocellaris
ENSSSCG00000003701	SNRPD1	100	96.429	ENSAPEG00000012539	SNRPD1	100	96.429	Amphiprion_percula
ENSSSCG00000003701	SNRPD1	100	92.437	ENSAPEG00000014961	snrpd1	100	92.437	Amphiprion_percula
ENSSSCG00000003701	SNRPD1	100	96.639	ENSATEG00000014399	snrpd1	100	96.639	Anabas_testudineus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSAPLG00000012256	SNRPD1	97	100.000	Anas_platyrhynchos
ENSSSCG00000003701	SNRPD1	100	100.000	ENSACAG00000006364	SNRPD1	100	100.000	Anolis_carolinensis
ENSSSCG00000003701	SNRPD1	100	100.000	ENSANAG00000025641	SNRPD1	100	100.000	Aotus_nancymaae
ENSSSCG00000003701	SNRPD1	100	96.429	ENSACLG00000017406	snrpd1	100	96.429	Astatotilapia_calliptera
ENSSSCG00000003701	SNRPD1	100	97.479	ENSAMXG00000004589	snrpd1	100	97.479	Astyanax_mexicanus
ENSSSCG00000003701	SNRPD1	100	97.321	ENSBTAG00000047266	-	94	97.321	Bos_taurus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSBTAG00000008292	SNRPD1	100	100.000	Bos_taurus
ENSSSCG00000003701	SNRPD1	97	96.522	ENSBTAG00000012376	-	86	96.522	Bos_taurus
ENSSSCG00000003701	SNRPD1	100	90.179	ENSBTAG00000055316	-	90	90.179	Bos_taurus
ENSSSCG00000003701	SNRPD1	74	80.682	WBGene00004916	snr-3	76	76.042	Caenorhabditis_elegans
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCJAG00000042955	SNRPD1	100	100.000	Callithrix_jacchus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCAFG00000018247	SNRPD1	100	100.000	Canis_familiaris
ENSSSCG00000003701	SNRPD1	80	100.000	ENSCAFG00020015914	SNRPD1	74	100.000	Canis_lupus_dingo
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCHIG00000005557	SNRPD1	100	97.479	Capra_hircus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSTSYG00000030028	SNRPD1	100	100.000	Carlito_syrichta
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCAPG00000008103	SNRPD1	99	99.130	Cavia_aperea
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCPOG00000004679	SNRPD1	100	100.000	Cavia_porcellus
ENSSSCG00000003701	SNRPD1	100	99.160	ENSCCAG00000020611	-	100	99.160	Cebus_capucinus
ENSSSCG00000003701	SNRPD1	100	96.429	ENSCCAG00000005390	-	94	96.429	Cebus_capucinus
ENSSSCG00000003701	SNRPD1	100	96.639	ENSCCAG00000016652	-	100	96.639	Cebus_capucinus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCCAG00000032658	SNRPD1	100	100.000	Cebus_capucinus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCATG00000039978	SNRPD1	100	100.000	Cercocebus_atys
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCLAG00000008691	SNRPD1	100	100.000	Chinchilla_lanigera
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCSAG00000017654	SNRPD1	100	100.000	Chlorocebus_sabaeus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCPBG00000023143	SNRPD1	100	100.000	Chrysemys_picta_bellii
ENSSSCG00000003701	SNRPD1	72	87.209	ENSCING00000024100	-	69	87.209	Ciona_intestinalis
ENSSSCG00000003701	SNRPD1	73	85.057	ENSCSAVG00000004578	-	70	85.057	Ciona_savignyi
ENSSSCG00000003701	SNRPD1	81	75.000	ENSCGRG00001009945	-	85	75.000	Cricetulus_griseus_chok1gshd
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCGRG00001021055	-	100	100.000	Cricetulus_griseus_chok1gshd
ENSSSCG00000003701	SNRPD1	81	75.000	ENSCGRG00000006224	-	85	75.000	Cricetulus_griseus_crigri
ENSSSCG00000003701	SNRPD1	100	100.000	ENSCGRG00000000490	-	100	100.000	Cricetulus_griseus_crigri
ENSSSCG00000003701	SNRPD1	80	94.737	ENSCSEG00000018141	snrpd1	81	94.792	Cynoglossus_semilaevis
ENSSSCG00000003701	SNRPD1	100	96.639	ENSCVAG00000000534	snrpd1	100	96.639	Cyprinodon_variegatus
ENSSSCG00000003701	SNRPD1	100	97.479	ENSDARG00000011648	snrpd1	100	97.479	Danio_rerio
ENSSSCG00000003701	SNRPD1	100	100.000	ENSDNOG00000040310	SNRPD1	100	100.000	Dasypus_novemcinctus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSDORG00000008349	Snrpd1	100	100.000	Dipodomys_ordii
ENSSSCG00000003701	SNRPD1	79	82.979	FBgn0261933	SmD1	76	82.979	Drosophila_melanogaster
ENSSSCG00000003701	SNRPD1	79	100.000	ENSETEG00000011689	SNRPD1	74	100.000	Echinops_telfairi
ENSSSCG00000003701	SNRPD1	94	92.857	ENSEBUG00000003170	snrpd1	94	92.857	Eptatretus_burgeri
ENSSSCG00000003701	SNRPD1	100	100.000	ENSEASG00005002433	SNRPD1	100	100.000	Equus_asinus_asinus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSECAG00000014373	SNRPD1	100	100.000	Equus_caballus
ENSSSCG00000003701	SNRPD1	78	100.000	ENSEEUG00000004987	SNRPD1	100	100.000	Erinaceus_europaeus
ENSSSCG00000003701	SNRPD1	93	85.586	ENSELUG00000000088	snrpd1	79	95.745	Esox_lucius
ENSSSCG00000003701	SNRPD1	100	100.000	ENSFCAG00000012352	SNRPD1	100	100.000	Felis_catus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSFALG00000002646	SNRPD1	100	100.000	Ficedula_albicollis
ENSSSCG00000003701	SNRPD1	100	97.479	ENSGMOG00000015607	snrpd1	100	97.479	Gadus_morhua
ENSSSCG00000003701	SNRPD1	100	100.000	ENSGALG00000041334	SNRPD1	100	100.000	Gallus_gallus
ENSSSCG00000003701	SNRPD1	100	96.639	ENSGAFG00000011171	snrpd1	100	96.639	Gambusia_affinis
ENSSSCG00000003701	SNRPD1	100	97.479	ENSGACG00000005201	SNRPD1	100	97.479	Gasterosteus_aculeatus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSGAGG00000011197	SNRPD1	100	100.000	Gopherus_agassizii
ENSSSCG00000003701	SNRPD1	100	100.000	ENSGGOG00000041053	SNRPD1	100	100.000	Gorilla_gorilla
ENSSSCG00000003701	SNRPD1	81	94.792	ENSGGOG00000026706	-	80	94.792	Gorilla_gorilla
ENSSSCG00000003701	SNRPD1	100	96.639	ENSHBUG00000003236	snrpd1	100	96.639	Haplochromis_burtoni
ENSSSCG00000003701	SNRPD1	100	100.000	ENSHGLG00000007152	SNRPD1	100	100.000	Heterocephalus_glaber_female
ENSSSCG00000003701	SNRPD1	100	100.000	ENSHGLG00100008618	SNRPD1	100	100.000	Heterocephalus_glaber_male
ENSSSCG00000003701	SNRPD1	100	96.639	ENSIPUG00000003576	snrpd1	100	96.639	Ictalurus_punctatus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSSTOG00000000485	SNRPD1	100	100.000	Ictidomys_tridecemlineatus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSJJAG00000017698	Snrpd1	100	100.000	Jaculus_jaculus
ENSSSCG00000003701	SNRPD1	100	96.639	ENSKMAG00000005987	snrpd1	100	96.639	Kryptolebias_marmoratus
ENSSSCG00000003701	SNRPD1	100	96.639	ENSLBEG00000003327	snrpd1	100	96.639	Labrus_bergylta
ENSSSCG00000003701	SNRPD1	100	100.000	ENSLACG00000001955	SNRPD1	100	100.000	Latimeria_chalumnae
ENSSSCG00000003701	SNRPD1	100	98.214	ENSLOCG00000002003	snrpd1	100	97.436	Lepisosteus_oculatus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSLAFG00000005819	SNRPD1	100	98.305	Loxodonta_africana
ENSSSCG00000003701	SNRPD1	100	100.000	ENSMFAG00000042080	SNRPD1	100	100.000	Macaca_fascicularis
ENSSSCG00000003701	SNRPD1	100	100.000	ENSMMUG00000003992	SNRPD1	97	100.000	Macaca_mulatta
ENSSSCG00000003701	SNRPD1	100	100.000	ENSMNEG00000041296	SNRPD1	100	100.000	Macaca_nemestrina
ENSSSCG00000003701	SNRPD1	100	100.000	ENSMLEG00000028659	SNRPD1	100	100.000	Mandrillus_leucophaeus
ENSSSCG00000003701	SNRPD1	100	96.639	ENSMAMG00000012971	snrpd1	100	96.639	Mastacembelus_armatus
ENSSSCG00000003701	SNRPD1	100	96.639	ENSMZEG00005004685	snrpd1	100	96.639	Maylandia_zebra
ENSSSCG00000003701	SNRPD1	100	100.000	ENSMGAG00000011598	SNRPD1	95	100.000	Meleagris_gallopavo
ENSSSCG00000003701	SNRPD1	81	83.333	ENSMAUG00000016502	-	86	83.333	Mesocricetus_auratus
ENSSSCG00000003701	SNRPD1	81	83.333	ENSMAUG00000016467	-	86	83.333	Mesocricetus_auratus
ENSSSCG00000003701	SNRPD1	84	94.681	ENSMAUG00000006829	-	62	94.845	Mesocricetus_auratus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSMICG00000044066	SNRPD1	100	100.000	Microcebus_murinus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSMOCG00000017367	Snrpd1	100	100.000	Microtus_ochrogaster
ENSSSCG00000003701	SNRPD1	100	96.639	ENSMMOG00000019089	snrpd1	100	96.639	Mola_mola
ENSSSCG00000003701	SNRPD1	100	100.000	ENSMODG00000021487	SNRPD1	100	100.000	Monodelphis_domestica
ENSSSCG00000003701	SNRPD1	100	96.639	ENSMALG00000014459	snrpd1	100	96.639	Monopterus_albus
ENSSSCG00000003701	SNRPD1	100	100.000	MGP_CAROLIEiJ_G0021994	Snrpd1	100	100.000	Mus_caroli
ENSSSCG00000003701	SNRPD1	100	100.000	ENSMUSG00000002477	Snrpd1	100	100.000	Mus_musculus
ENSSSCG00000003701	SNRPD1	100	100.000	MGP_PahariEiJ_G0018731	Snrpd1	100	100.000	Mus_pahari
ENSSSCG00000003701	SNRPD1	100	100.000	MGP_SPRETEiJ_G0022910	Snrpd1	100	100.000	Mus_spretus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSMPUG00000005567	-	100	98.291	Mustela_putorius_furo
ENSSSCG00000003701	SNRPD1	100	99.160	ENSMPUG00000020041	-	100	99.160	Mustela_putorius_furo
ENSSSCG00000003701	SNRPD1	97	100.000	ENSMLUG00000009124	SNRPD1	90	97.414	Myotis_lucifugus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSNGAG00000023946	Snrpd1	100	100.000	Nannospalax_galili
ENSSSCG00000003701	SNRPD1	79	95.745	ENSNBRG00000012119	snrpd1	78	95.745	Neolamprologus_brichardi
ENSSSCG00000003701	SNRPD1	100	97.479	ENSNLEG00000031430	SNRPD1	100	97.479	Nomascus_leucogenys
ENSSSCG00000003701	SNRPD1	100	100.000	ENSODEG00000005764	SNRPD1	100	100.000	Octodon_degus
ENSSSCG00000003701	SNRPD1	100	96.639	ENSONIG00000002486	snrpd1	100	96.639	Oreochromis_niloticus
ENSSSCG00000003701	SNRPD1	85	88.421	ENSOANG00000004638	-	82	88.776	Ornithorhynchus_anatinus
ENSSSCG00000003701	SNRPD1	100	99.160	ENSOCUG00000014399	-	100	99.160	Oryctolagus_cuniculus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSOCUG00000023761	-	100	98.291	Oryctolagus_cuniculus
ENSSSCG00000003701	SNRPD1	100	96.429	ENSORLG00000012516	snrpd1	100	96.429	Oryzias_latipes
ENSSSCG00000003701	SNRPD1	100	96.639	ENSORLG00020005743	snrpd1	100	96.639	Oryzias_latipes_hni
ENSSSCG00000003701	SNRPD1	100	96.639	ENSORLG00015013402	snrpd1	100	96.639	Oryzias_latipes_hsok
ENSSSCG00000003701	SNRPD1	100	96.639	ENSOMEG00000011571	snrpd1	100	96.639	Oryzias_melastigma
ENSSSCG00000003701	SNRPD1	100	100.000	ENSOGAG00000007833	SNRPD1	100	96.639	Otolemur_garnettii
ENSSSCG00000003701	SNRPD1	100	94.958	ENSOARG00000003413	-	85	94.958	Ovis_aries
ENSSSCG00000003701	SNRPD1	100	100.000	ENSPPAG00000042593	SNRPD1	100	100.000	Pan_paniscus
ENSSSCG00000003701	SNRPD1	94	72.321	ENSPPRG00000005009	-	92	72.321	Panthera_pardus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSPPRG00000002399	SNRPD1	100	100.000	Panthera_pardus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSPTIG00000013206	SNRPD1	100	100.000	Panthera_tigris_altaica
ENSSSCG00000003701	SNRPD1	86	94.118	ENSPTRG00000050159	-	87	94.118	Pan_troglodytes
ENSSSCG00000003701	SNRPD1	100	100.000	ENSPTRG00000009909	SNRPD1	100	100.000	Pan_troglodytes
ENSSSCG00000003701	SNRPD1	100	100.000	ENSPANG00000023478	SNRPD1	100	100.000	Papio_anubis
ENSSSCG00000003701	SNRPD1	100	97.479	ENSPKIG00000003985	SNRPD1	100	97.479	Paramormyrops_kingsleyae
ENSSSCG00000003701	SNRPD1	94	95.238	ENSPKIG00000021610	snrpd1	94	95.238	Paramormyrops_kingsleyae
ENSSSCG00000003701	SNRPD1	100	96.639	ENSPMGG00000001862	snrpd1	100	96.639	Periophthalmus_magnuspinnatus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSPEMG00000014773	-	100	100.000	Peromyscus_maniculatus_bairdii
ENSSSCG00000003701	SNRPD1	86	82.692	ENSPMAG00000003938	-	85	82.692	Petromyzon_marinus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSPCIG00000020320	SNRPD1	100	100.000	Phascolarctos_cinereus
ENSSSCG00000003701	SNRPD1	81	95.833	ENSPFOG00000012448	SNRPD1	85	95.833	Poecilia_formosa
ENSSSCG00000003701	SNRPD1	81	95.833	ENSPLAG00000006738	snrpd1	85	95.833	Poecilia_latipinna
ENSSSCG00000003701	SNRPD1	81	95.833	ENSPMEG00000021942	snrpd1	85	95.833	Poecilia_mexicana
ENSSSCG00000003701	SNRPD1	100	96.639	ENSPREG00000007094	snrpd1	100	96.639	Poecilia_reticulata
ENSSSCG00000003701	SNRPD1	100	100.000	ENSPPYG00000025874	SNRPD1	100	100.000	Pongo_abelii
ENSSSCG00000003701	SNRPD1	100	100.000	ENSPCOG00000013327	SNRPD1	100	100.000	Propithecus_coquereli
ENSSSCG00000003701	SNRPD1	100	100.000	ENSPVAG00000005511	SNRPD1	80	100.000	Pteropus_vampyrus
ENSSSCG00000003701	SNRPD1	100	96.639	ENSPNAG00000017824	snrpd1	100	96.639	Pygocentrus_nattereri
ENSSSCG00000003701	SNRPD1	100	100.000	ENSRNOG00000013714	Snrpd1	100	100.000	Rattus_norvegicus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSRBIG00000022996	SNRPD1	100	100.000	Rhinopithecus_bieti
ENSSSCG00000003701	SNRPD1	100	100.000	ENSRROG00000027640	SNRPD1	100	100.000	Rhinopithecus_roxellana
ENSSSCG00000003701	SNRPD1	100	100.000	ENSSBOG00000020998	SNRPD1	100	100.000	Saimiri_boliviensis_boliviensis
ENSSSCG00000003701	SNRPD1	100	100.000	ENSSHAG00000011791	SNRPD1	100	100.000	Sarcophilus_harrisii
ENSSSCG00000003701	SNRPD1	94	95.536	ENSSFOG00015022253	-	94	95.536	Scleropages_formosus
ENSSSCG00000003701	SNRPD1	94	95.536	ENSSFOG00015008809	-	94	95.536	Scleropages_formosus
ENSSSCG00000003701	SNRPD1	94	95.536	ENSSMAG00000008765	snrpd1	94	95.536	Scophthalmus_maximus
ENSSSCG00000003701	SNRPD1	100	96.429	ENSSDUG00000010521	snrpd1	95	96.429	Seriola_dumerili
ENSSSCG00000003701	SNRPD1	100	96.639	ENSSLDG00000011858	snrpd1	100	96.639	Seriola_lalandi_dorsalis
ENSSSCG00000003701	SNRPD1	58	100.000	ENSSARG00000004271	SNRPD1	100	100.000	Sorex_araneus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSSPUG00000002824	SNRPD1	100	100.000	Sphenodon_punctatus
ENSSSCG00000003701	SNRPD1	100	96.429	ENSSPAG00000015229	snrpd1	100	96.429	Stegastes_partitus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSTGUG00000005095	SNRPD1	97	100.000	Taeniopygia_guttata
ENSSSCG00000003701	SNRPD1	100	96.429	ENSTRUG00000008977	snrpd1	100	96.429	Takifugu_rubripes
ENSSSCG00000003701	SNRPD1	86	91.667	ENSTNIG00000001224	snrpd1	92	91.667	Tetraodon_nigroviridis
ENSSSCG00000003701	SNRPD1	79	100.000	ENSTBEG00000013776	SNRPD1	100	100.000	Tupaia_belangeri
ENSSSCG00000003701	SNRPD1	100	100.000	ENSTTRG00000002654	SNRPD1	100	100.000	Tursiops_truncatus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSUAMG00000013431	SNRPD1	97	100.000	Ursus_americanus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSUMAG00000019740	SNRPD1	100	100.000	Ursus_maritimus
ENSSSCG00000003701	SNRPD1	100	100.000	ENSVPAG00000010056	SNRPD1	80	100.000	Vicugna_pacos
ENSSSCG00000003701	SNRPD1	100	100.000	ENSVVUG00000004009	SNRPD1	100	100.000	Vulpes_vulpes
ENSSSCG00000003701	SNRPD1	100	98.319	ENSXETG00000027354	snrpd1	100	98.319	Xenopus_tropicalis
ENSSSCG00000003701	SNRPD1	100	96.639	ENSXCOG00000020108	snrpd1	100	96.639	Xiphophorus_couchianus
ENSSSCG00000003701	SNRPD1	100	96.639	ENSXMAG00000003368	snrpd1	100	96.639	Xiphophorus_maculatus