EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000003703 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 423 bases
Position: chr6:107462230-107462652
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000004010	RNA_pol_L_2	PF13656.6	3e-23	1	1
ENSSSCP00000004010	RNA_pol_L	PF01193.24	3.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000004102	-	423	-	ENSSSCP00000004010	140 (aa)	-	F1SBB9

Gene Model

Click here to download ENSSSCG00000003703's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000003703's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000003703	-	83	82.906	ENSSSCG00000007688	-	100	82.906
ENSSSCG00000003703	-	56	32.051	ENSSSCG00000009310	POLR1D	59	32.051

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000003703	-	93	70.769	ENSG00000228049	POLR2J2	94	78.704	Homo_sapiens
ENSSSCG00000003703	-	83	82.906	ENSG00000005075	POLR2J	100	82.906	Homo_sapiens
ENSSSCG00000003703	-	83	78.632	ENSAPOG00000019538	polr2j	100	78.632	Acanthochromis_polyacanthus
ENSSSCG00000003703	-	83	76.378	ENSAMEG00000015480	-	100	76.378	Ailuropoda_melanoleuca
ENSSSCG00000003703	-	77	60.000	ENSACIG00000014549	POLR2J2	91	60.000	Amphilophus_citrinellus
ENSSSCG00000003703	-	83	78.632	ENSAOCG00000006937	polr2j	100	78.632	Amphiprion_ocellaris
ENSSSCG00000003703	-	83	78.632	ENSAPEG00000021761	polr2j	100	78.632	Amphiprion_percula
ENSSSCG00000003703	-	83	78.632	ENSATEG00000009731	polr2j	100	78.632	Anabas_testudineus
ENSSSCG00000003703	-	83	78.632	ENSATEG00000013312	-	100	78.632	Anabas_testudineus
ENSSSCG00000003703	-	71	84.000	ENSAPLG00000003744	-	99	84.000	Anas_platyrhynchos
ENSSSCG00000003703	-	83	76.068	ENSACAG00000000251	POLR2J	100	76.068	Anolis_carolinensis
ENSSSCG00000003703	-	83	78.632	ENSACLG00000014564	polr2j	100	78.632	Astatotilapia_calliptera
ENSSSCG00000003703	-	83	80.342	ENSAMXG00000007517	polr2j	100	80.342	Astyanax_mexicanus
ENSSSCG00000003703	-	78	63.303	WBGene00012187	rpb-11	89	63.303	Caenorhabditis_elegans
ENSSSCG00000003703	-	83	82.906	ENSCJAG00000016203	-	100	82.906	Callithrix_jacchus
ENSSSCG00000003703	-	83	82.906	ENSCAFG00000013683	-	100	82.906	Canis_familiaris
ENSSSCG00000003703	-	71	84.848	ENSTSYG00000029243	-	85	84.848	Carlito_syrichta
ENSSSCG00000003703	-	83	82.906	ENSCPOG00000001401	-	100	82.906	Cavia_porcellus
ENSSSCG00000003703	-	83	61.207	ENSCATG00000016595	-	96	71.429	Cercocebus_atys
ENSSSCG00000003703	-	83	82.906	ENSCLAG00000005238	-	100	82.906	Chinchilla_lanigera
ENSSSCG00000003703	-	83	82.906	ENSCSAG00000018092	-	100	82.906	Chlorocebus_sabaeus
ENSSSCG00000003703	-	83	66.667	ENSCING00000020531	-	100	66.667	Ciona_intestinalis
ENSSSCG00000003703	-	83	66.667	ENSCSAVG00000006948	-	100	66.667	Ciona_savignyi
ENSSSCG00000003703	-	83	82.906	ENSCGRG00001012814	Polr2j	100	82.906	Cricetulus_griseus_chok1gshd
ENSSSCG00000003703	-	83	71.795	ENSCGRG00000008433	Polr2j	100	71.795	Cricetulus_griseus_crigri
ENSSSCG00000003703	-	83	77.778	ENSCSEG00000020352	polr2j	100	77.778	Cynoglossus_semilaevis
ENSSSCG00000003703	-	83	77.778	ENSCVAG00000014267	polr2j	100	77.778	Cyprinodon_variegatus
ENSSSCG00000003703	-	83	79.487	ENSDARG00000035146	polr2j	100	79.487	Danio_rerio
ENSSSCG00000003703	-	83	82.906	ENSDORG00000005934	Polr2j	100	82.906	Dipodomys_ordii
ENSSSCG00000003703	-	81	63.478	FBgn0032634	Rpb11	98	63.478	Drosophila_melanogaster
ENSSSCG00000003703	-	83	54.310	ENSEBUG00000016100	polr2j	100	54.310	Eptatretus_burgeri
ENSSSCG00000003703	-	83	82.906	ENSEASG00005016864	-	100	82.906	Equus_asinus_asinus
ENSSSCG00000003703	-	83	79.487	ENSELUG00000012822	polr2j	100	79.487	Esox_lucius
ENSSSCG00000003703	-	83	82.906	ENSFCAG00000000377	-	100	82.906	Felis_catus
ENSSSCG00000003703	-	83	82.906	ENSFALG00000009523	POLR2J	100	82.906	Ficedula_albicollis
ENSSSCG00000003703	-	83	82.906	ENSFDAG00000010507	-	100	82.906	Fukomys_damarensis
ENSSSCG00000003703	-	83	78.632	ENSFHEG00000006625	polr2j	100	78.632	Fundulus_heteroclitus
ENSSSCG00000003703	-	83	78.632	ENSGMOG00000018207	polr2j	100	78.632	Gadus_morhua
ENSSSCG00000003703	-	83	82.906	ENSGALG00000030808	-	100	82.906	Gallus_gallus
ENSSSCG00000003703	-	83	78.632	ENSGAFG00000019555	polr2j	100	78.632	Gambusia_affinis
ENSSSCG00000003703	-	83	78.632	ENSGACG00000003310	polr2j	100	78.632	Gasterosteus_aculeatus
ENSSSCG00000003703	-	74	81.731	ENSGAGG00000018304	-	95	81.731	Gopherus_agassizii
ENSSSCG00000003703	-	71	80.000	ENSGGOG00000004519	-	80	80.000	Gorilla_gorilla
ENSSSCG00000003703	-	83	78.632	ENSHBUG00000008467	polr2j	100	78.632	Haplochromis_burtoni
ENSSSCG00000003703	-	83	82.906	ENSHGLG00000013598	POLR2J	100	82.906	Heterocephalus_glaber_female
ENSSSCG00000003703	-	83	82.906	ENSHGLG00100011242	POLR2J	100	82.906	Heterocephalus_glaber_male
ENSSSCG00000003703	-	84	77.311	ENSHCOG00000014827	polr2j	76	72.519	Hippocampus_comes
ENSSSCG00000003703	-	83	80.342	ENSIPUG00000023960	polr2j	100	80.342	Ictalurus_punctatus
ENSSSCG00000003703	-	83	82.906	ENSSTOG00000006377	POLR2J	100	82.906	Ictidomys_tridecemlineatus
ENSSSCG00000003703	-	83	82.906	ENSJJAG00000013854	-	100	82.906	Jaculus_jaculus
ENSSSCG00000003703	-	83	78.632	ENSJJAG00000018834	-	100	78.632	Jaculus_jaculus
ENSSSCG00000003703	-	83	78.632	ENSKMAG00000014581	polr2j	79	78.632	Kryptolebias_marmoratus
ENSSSCG00000003703	-	83	78.632	ENSLBEG00000005885	polr2j	100	78.632	Labrus_bergylta
ENSSSCG00000003703	-	83	80.342	ENSLOCG00000001885	polr2j	89	80.342	Lepisosteus_oculatus
ENSSSCG00000003703	-	83	82.906	ENSLAFG00000021507	-	100	82.906	Loxodonta_africana
ENSSSCG00000003703	-	83	74.615	ENSMMUG00000012019	POLR2J	100	74.615	Macaca_mulatta
ENSSSCG00000003703	-	83	78.632	ENSMAMG00000009374	polr2j	100	78.632	Mastacembelus_armatus
ENSSSCG00000003703	-	83	78.632	ENSMZEG00005011932	polr2j	100	78.632	Maylandia_zebra
ENSSSCG00000003703	-	83	82.906	ENSMGAG00000003534	POLR2J	100	82.906	Meleagris_gallopavo
ENSSSCG00000003703	-	83	82.906	ENSMAUG00000013049	Polr2j	100	82.906	Mesocricetus_auratus
ENSSSCG00000003703	-	66	81.522	ENSMICG00000026811	-	92	81.522	Microcebus_murinus
ENSSSCG00000003703	-	83	82.906	ENSMOCG00000001294	Polr2j	100	82.906	Microtus_ochrogaster
ENSSSCG00000003703	-	83	78.632	ENSMMOG00000013265	polr2j	100	78.632	Mola_mola
ENSSSCG00000003703	-	83	75.781	ENSMODG00000013617	-	100	75.781	Monodelphis_domestica
ENSSSCG00000003703	-	83	78.632	ENSMALG00000020749	polr2j	100	78.632	Monopterus_albus
ENSSSCG00000003703	-	83	82.906	MGP_CAROLIEiJ_G0027851	Polr2j	100	82.906	Mus_caroli
ENSSSCG00000003703	-	83	82.906	ENSMUSG00000039771	Polr2j	100	82.906	Mus_musculus
ENSSSCG00000003703	-	83	82.906	MGP_PahariEiJ_G0024434	Polr2j	100	82.906	Mus_pahari
ENSSSCG00000003703	-	83	82.906	MGP_SPRETEiJ_G0028853	Polr2j	100	82.906	Mus_spretus
ENSSSCG00000003703	-	83	82.906	ENSMLUG00000010467	POLR2J	100	82.906	Myotis_lucifugus
ENSSSCG00000003703	-	83	82.906	ENSNGAG00000023412	Polr2j	100	82.906	Nannospalax_galili
ENSSSCG00000003703	-	54	76.316	ENSNBRG00000006580	polr2j	59	76.316	Neolamprologus_brichardi
ENSSSCG00000003703	-	83	82.906	ENSODEG00000015648	-	100	82.906	Octodon_degus
ENSSSCG00000003703	-	83	64.957	ENSODEG00000008559	-	100	64.957	Octodon_degus
ENSSSCG00000003703	-	83	78.632	ENSONIG00000000259	polr2j	100	78.632	Oreochromis_niloticus
ENSSSCG00000003703	-	83	80.342	ENSOANG00000020912	POLR2J	100	80.342	Ornithorhynchus_anatinus
ENSSSCG00000003703	-	83	76.378	ENSOCUG00000023609	POLR2J	100	76.378	Oryctolagus_cuniculus
ENSSSCG00000003703	-	83	78.632	ENSORLG00000029046	polr2j	83	78.632	Oryzias_latipes
ENSSSCG00000003703	-	83	78.632	ENSORLG00020007625	polr2j	83	78.632	Oryzias_latipes_hni
ENSSSCG00000003703	-	83	78.632	ENSORLG00015003457	polr2j	83	78.632	Oryzias_latipes_hsok
ENSSSCG00000003703	-	83	77.778	ENSOMEG00000002097	polr2j	100	77.778	Oryzias_melastigma
ENSSSCG00000003703	-	83	57.812	ENSOGAG00000008250	-	100	57.812	Otolemur_garnettii
ENSSSCG00000003703	-	83	82.906	ENSOARG00000014204	-	98	82.906	Ovis_aries
ENSSSCG00000003703	-	83	82.906	ENSPPRG00000012439	-	100	82.906	Panthera_pardus
ENSSSCG00000003703	-	80	78.571	ENSPTIG00000018714	-	96	84.848	Panthera_tigris_altaica
ENSSSCG00000003703	-	71	84.000	ENSPSIG00000010173	-	100	84.000	Pelodiscus_sinensis
ENSSSCG00000003703	-	83	78.632	ENSPMGG00000021256	polr2j	100	78.632	Periophthalmus_magnuspinnatus
ENSSSCG00000003703	-	83	82.906	ENSPEMG00000015733	Polr2j	100	82.906	Peromyscus_maniculatus_bairdii
ENSSSCG00000003703	-	83	82.906	ENSPCIG00000009026	-	100	82.906	Phascolarctos_cinereus
ENSSSCG00000003703	-	83	78.632	ENSPFOG00000012001	polr2j	99	78.632	Poecilia_formosa
ENSSSCG00000003703	-	83	78.632	ENSPLAG00000014075	polr2j	100	78.632	Poecilia_latipinna
ENSSSCG00000003703	-	83	78.632	ENSPMEG00000020585	polr2j	100	78.632	Poecilia_mexicana
ENSSSCG00000003703	-	83	78.632	ENSPREG00000015255	polr2j	100	78.632	Poecilia_reticulata
ENSSSCG00000003703	-	83	82.906	ENSPCOG00000024573	-	100	82.906	Propithecus_coquereli
ENSSSCG00000003703	-	85	75.833	ENSPVAG00000017770	-	68	75.833	Pteropus_vampyrus
ENSSSCG00000003703	-	83	78.632	ENSPNYG00000014832	polr2j	100	78.632	Pundamilia_nyererei
ENSSSCG00000003703	-	83	77.778	ENSPNAG00000016595	polr2j	100	77.778	Pygocentrus_nattereri
ENSSSCG00000003703	-	83	82.906	ENSRNOG00000001430	Polr2j	100	82.906	Rattus_norvegicus
ENSSSCG00000003703	-	83	82.906	ENSSBOG00000025579	-	100	82.906	Saimiri_boliviensis_boliviensis
ENSSSCG00000003703	-	77	77.064	ENSSFOG00015003371	polr2j	83	77.064	Scleropages_formosus
ENSSSCG00000003703	-	83	78.632	ENSSMAG00000006729	polr2j	100	78.632	Scophthalmus_maximus
ENSSSCG00000003703	-	83	78.632	ENSSDUG00000018490	polr2j	100	78.632	Seriola_dumerili
ENSSSCG00000003703	-	83	78.632	ENSSLDG00000022354	polr2j	100	78.632	Seriola_lalandi_dorsalis
ENSSSCG00000003703	-	83	82.906	ENSSPUG00000010802	-	100	82.906	Sphenodon_punctatus
ENSSSCG00000003703	-	83	78.632	ENSSPAG00000021953	polr2j	100	78.632	Stegastes_partitus
ENSSSCG00000003703	-	71	84.000	ENSTGUG00000004501	-	100	84.000	Taeniopygia_guttata
ENSSSCG00000003703	-	83	78.632	ENSTRUG00000020842	polr2j	100	78.632	Takifugu_rubripes
ENSSSCG00000003703	-	83	77.778	ENSTNIG00000002994	polr2j	100	77.778	Tetraodon_nigroviridis
ENSSSCG00000003703	-	76	65.421	ENSTBEG00000005797	-	70	65.421	Tupaia_belangeri
ENSSSCG00000003703	-	83	82.906	ENSUAMG00000011310	-	100	82.906	Ursus_americanus
ENSSSCG00000003703	-	83	82.906	ENSUMAG00000012594	-	100	82.906	Ursus_maritimus
ENSSSCG00000003703	-	83	82.051	ENSXETG00000001108	polr2j	100	82.051	Xenopus_tropicalis
ENSSSCG00000003703	-	83	78.632	ENSXMAG00000012422	polr2j	100	78.632	Xiphophorus_maculatus