EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSSCG00000003905 (Gene tree)
Gene ID: 100141305
Gene Symbol: RAD54L
Alias: -
Full Name: RAD54 like
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 31764 bases
Position: chr6:165153136-165184899
Accession: 100141305
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000004220	ResIII	PF04851.15	2.4e-08	1	1
ENSSSCP00000034469	ResIII	PF04851.15	2.6e-08	1	1
ENSSSCP00000004220	DEAD	PF00270.29	4.2e-06	1	1
ENSSSCP00000034469	DEAD	PF00270.29	4.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000004320	-	2855	-	ENSSSCP00000004220	722 (aa)	-	F1S3V8
ENSSSCT00000059309	-	6845	-	ENSSSCP00000034469	747 (aa)	-	A0A286ZS42

Gene Model

Click here to download ENSSSCG00000003905's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000003905's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSSCG00000003905	RAD54L	82	45.245	ENSSSCG00000006101	-	80	45.008
ENSSSCG00000003905	RAD54L	64	35.981	ENSSSCG00000010486	HELLS	54	35.981
ENSSSCG00000003905	RAD54L	66	30.785	ENSSSCG00000006701	CHD1L	60	30.785

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000003905	RAD54L	100	95.181	ENSG00000085999	RAD54L	100	98.667	Homo_sapiens
ENSSSCG00000003905	RAD54L	99	77.120	ENSAPOG00000011643	rad54l	99	77.120	Acanthochromis_polyacanthus
ENSSSCG00000003905	RAD54L	99	95.973	ENSAMEG00000013902	RAD54L	99	95.973	Ailuropoda_melanoleuca
ENSSSCG00000003905	RAD54L	99	77.047	ENSACIG00000001939	rad54l	99	77.047	Amphilophus_citrinellus
ENSSSCG00000003905	RAD54L	99	80.485	ENSAOCG00000017576	rad54l	99	80.485	Amphiprion_ocellaris
ENSSSCG00000003905	RAD54L	95	80.872	ENSAPEG00000020658	rad54l	97	81.676	Amphiprion_percula
ENSSSCG00000003905	RAD54L	94	82.077	ENSATEG00000006767	rad54l	99	82.077	Anabas_testudineus
ENSSSCG00000003905	RAD54L	94	86.222	ENSAPLG00000006389	RAD54L	99	86.222	Anas_platyrhynchos
ENSSSCG00000003905	RAD54L	99	84.337	ENSACAG00000002312	RAD54L	99	84.337	Anolis_carolinensis
ENSSSCG00000003905	RAD54L	100	94.645	ENSANAG00000035439	RAD54L	100	94.645	Aotus_nancymaae
ENSSSCG00000003905	RAD54L	99	76.944	ENSACLG00000018711	rad54l	99	76.944	Astatotilapia_calliptera
ENSSSCG00000003905	RAD54L	99	80.563	ENSAMXG00000012777	rad54l	99	80.563	Astyanax_mexicanus
ENSSSCG00000003905	RAD54L	99	96.118	ENSBTAG00000019901	RAD54L	99	96.118	Bos_taurus
ENSSSCG00000003905	RAD54L	98	54.499	WBGene00004298	rad-54	94	54.499	Caenorhabditis_elegans
ENSSSCG00000003905	RAD54L	99	91.845	ENSCJAG00000021080	RAD54L	94	94.504	Callithrix_jacchus
ENSSSCG00000003905	RAD54L	99	95.040	ENSCAFG00000004272	RAD54L	99	95.040	Canis_familiaris
ENSSSCG00000003905	RAD54L	99	95.034	ENSCAFG00020015066	RAD54L	99	95.034	Canis_lupus_dingo
ENSSSCG00000003905	RAD54L	99	95.845	ENSCHIG00000020118	RAD54L	99	95.845	Capra_hircus
ENSSSCG00000003905	RAD54L	100	93.316	ENSTSYG00000002032	RAD54L	100	93.316	Carlito_syrichta
ENSSSCG00000003905	RAD54L	99	94.236	ENSCPOG00000006768	RAD54L	99	94.236	Cavia_porcellus
ENSSSCG00000003905	RAD54L	100	95.315	ENSCCAG00000025783	RAD54L	100	95.315	Cebus_capucinus
ENSSSCG00000003905	RAD54L	100	95.181	ENSCATG00000030589	RAD54L	100	95.181	Cercocebus_atys
ENSSSCG00000003905	RAD54L	99	94.638	ENSCLAG00000004645	RAD54L	99	94.638	Chinchilla_lanigera
ENSSSCG00000003905	RAD54L	100	95.181	ENSCSAG00000001229	RAD54L	100	95.181	Chlorocebus_sabaeus
ENSSSCG00000003905	RAD54L	99	86.613	ENSCPBG00000005675	RAD54L	99	86.613	Chrysemys_picta_bellii
ENSSSCG00000003905	RAD54L	99	62.968	ENSCING00000024456	-	99	62.887	Ciona_intestinalis
ENSSSCG00000003905	RAD54L	99	62.842	ENSCSAVG00000010859	-	99	62.760	Ciona_savignyi
ENSSSCG00000003905	RAD54L	100	94.913	ENSCANG00000034891	RAD54L	100	94.913	Colobus_angolensis_palliatus
ENSSSCG00000003905	RAD54L	99	93.029	ENSCGRG00001014807	Rad54l	99	93.029	Cricetulus_griseus_chok1gshd
ENSSSCG00000003905	RAD54L	99	93.029	ENSCGRG00000016038	Rad54l	99	93.029	Cricetulus_griseus_crigri
ENSSSCG00000003905	RAD54L	99	77.614	ENSCSEG00000001983	rad54l	99	77.614	Cynoglossus_semilaevis
ENSSSCG00000003905	RAD54L	87	80.237	ENSCVAG00000019561	rad54l	99	80.237	Cyprinodon_variegatus
ENSSSCG00000003905	RAD54L	99	79.625	ENSDARG00000018623	rad54l	99	79.625	Danio_rerio
ENSSSCG00000003905	RAD54L	99	93.432	ENSDNOG00000003395	RAD54L	99	93.432	Dasypus_novemcinctus
ENSSSCG00000003905	RAD54L	100	84.462	ENSDORG00000002632	Rad54l	100	84.462	Dipodomys_ordii
ENSSSCG00000003905	RAD54L	99	54.775	FBgn0002989	okr	95	54.775	Drosophila_melanogaster
ENSSSCG00000003905	RAD54L	78	94.309	ENSETEG00000000550	RAD54L	78	94.309	Echinops_telfairi
ENSSSCG00000003905	RAD54L	99	95.302	ENSEASG00005004511	RAD54L	99	95.302	Equus_asinus_asinus
ENSSSCG00000003905	RAD54L	99	95.710	ENSECAG00000008760	RAD54L	99	95.710	Equus_caballus
ENSSSCG00000003905	RAD54L	99	88.338	ENSEEUG00000008113	RAD54L	99	88.338	Erinaceus_europaeus
ENSSSCG00000003905	RAD54L	99	81.041	ENSELUG00000002295	rad54l	99	81.041	Esox_lucius
ENSSSCG00000003905	RAD54L	99	94.236	ENSFCAG00000003444	RAD54L	99	94.236	Felis_catus
ENSSSCG00000003905	RAD54L	99	84.605	ENSFALG00000009480	RAD54L	99	84.605	Ficedula_albicollis
ENSSSCG00000003905	RAD54L	100	93.976	ENSFDAG00000007806	RAD54L	100	93.976	Fukomys_damarensis
ENSSSCG00000003905	RAD54L	65	74.274	ENSFHEG00000009824	rad54l	82	74.274	Fundulus_heteroclitus
ENSSSCG00000003905	RAD54L	99	78.255	ENSGMOG00000014568	rad54l	99	78.255	Gadus_morhua
ENSSSCG00000003905	RAD54L	99	84.718	ENSGALG00000010356	RAD54L	92	84.718	Gallus_gallus
ENSSSCG00000003905	RAD54L	91	79.204	ENSGAFG00000011110	rad54l	100	79.204	Gambusia_affinis
ENSSSCG00000003905	RAD54L	99	79.518	ENSGACG00000003111	rad54l	97	79.518	Gasterosteus_aculeatus
ENSSSCG00000003905	RAD54L	99	86.193	ENSGAGG00000014089	RAD54L	96	86.193	Gopherus_agassizii
ENSSSCG00000003905	RAD54L	100	95.047	ENSGGOG00000010602	RAD54L	100	95.047	Gorilla_gorilla
ENSSSCG00000003905	RAD54L	99	77.212	ENSHBUG00000007793	rad54l	99	77.212	Haplochromis_burtoni
ENSSSCG00000003905	RAD54L	100	94.779	ENSHGLG00000000753	RAD54L	100	94.779	Heterocephalus_glaber_female
ENSSSCG00000003905	RAD54L	100	94.645	ENSHGLG00100016987	RAD54L	100	94.645	Heterocephalus_glaber_male
ENSSSCG00000003905	RAD54L	99	78.905	ENSIPUG00000015999	rad54l	99	81.402	Ictalurus_punctatus
ENSSSCG00000003905	RAD54L	99	94.370	ENSSTOG00000029125	RAD54L	99	94.370	Ictidomys_tridecemlineatus
ENSSSCG00000003905	RAD54L	99	80.268	ENSJJAG00000000235	-	99	80.134	Jaculus_jaculus
ENSSSCG00000003905	RAD54L	99	78.091	ENSKMAG00000009944	rad54l	99	78.091	Kryptolebias_marmoratus
ENSSSCG00000003905	RAD54L	99	80.108	ENSLBEG00000014617	rad54l	99	82.190	Labrus_bergylta
ENSSSCG00000003905	RAD54L	99	81.233	ENSLOCG00000004144	rad54l	100	83.086	Lepisosteus_oculatus
ENSSSCG00000003905	RAD54L	99	95.034	ENSLAFG00000007583	RAD54L	99	95.034	Loxodonta_africana
ENSSSCG00000003905	RAD54L	99	95.040	ENSMFAG00000031241	RAD54L	99	95.040	Macaca_fascicularis
ENSSSCG00000003905	RAD54L	99	95.040	ENSMMUG00000011568	RAD54L	99	95.040	Macaca_mulatta
ENSSSCG00000003905	RAD54L	99	95.040	ENSMNEG00000038562	RAD54L	99	95.040	Macaca_nemestrina
ENSSSCG00000003905	RAD54L	100	95.181	ENSMLEG00000038145	RAD54L	100	95.181	Mandrillus_leucophaeus
ENSSSCG00000003905	RAD54L	99	78.954	ENSMAMG00000022180	rad54l	100	81.965	Mastacembelus_armatus
ENSSSCG00000003905	RAD54L	99	76.810	ENSMZEG00005018081	rad54l	99	76.810	Maylandia_zebra
ENSSSCG00000003905	RAD54L	99	84.564	ENSMGAG00000010634	RAD54L	99	84.564	Meleagris_gallopavo
ENSSSCG00000003905	RAD54L	99	93.029	ENSMAUG00000020076	Rad54l	99	93.029	Mesocricetus_auratus
ENSSSCG00000003905	RAD54L	99	94.906	ENSMICG00000003266	RAD54L	99	94.906	Microcebus_murinus
ENSSSCG00000003905	RAD54L	99	93.298	ENSMOCG00000001778	Rad54l	99	93.298	Microtus_ochrogaster
ENSSSCG00000003905	RAD54L	99	79.196	ENSMALG00000021148	rad54l	99	79.196	Monopterus_albus
ENSSSCG00000003905	RAD54L	99	88.918	MGP_CAROLIEiJ_G0026325	Rad54l	99	88.918	Mus_caroli
ENSSSCG00000003905	RAD54L	99	94.102	ENSMUSG00000028702	Rad54l	99	94.102	Mus_musculus
ENSSSCG00000003905	RAD54L	99	93.700	MGP_PahariEiJ_G0028657	Rad54l	99	93.700	Mus_pahari
ENSSSCG00000003905	RAD54L	99	94.236	MGP_SPRETEiJ_G0027297	Rad54l	99	94.236	Mus_spretus
ENSSSCG00000003905	RAD54L	99	95.040	ENSMPUG00000012883	RAD54L	99	95.040	Mustela_putorius_furo
ENSSSCG00000003905	RAD54L	99	96.113	ENSMLUG00000003763	RAD54L	99	96.113	Myotis_lucifugus
ENSSSCG00000003905	RAD54L	99	92.493	ENSNGAG00000024213	Rad54l	99	92.493	Nannospalax_galili
ENSSSCG00000003905	RAD54L	100	94.645	ENSNLEG00000016548	RAD54L	100	94.645	Nomascus_leucogenys
ENSSSCG00000003905	RAD54L	90	84.763	ENSMEUG00000006793	RAD54L	99	84.763	Notamacropus_eugenii
ENSSSCG00000003905	RAD54L	94	94.774	ENSOPRG00000016016	RAD54L	90	94.774	Ochotona_princeps
ENSSSCG00000003905	RAD54L	100	95.315	ENSODEG00000008519	RAD54L	99	95.315	Octodon_degus
ENSSSCG00000003905	RAD54L	99	77.078	ENSONIG00000007659	rad54l	99	77.078	Oreochromis_niloticus
ENSSSCG00000003905	RAD54L	99	94.102	ENSOCUG00000005229	RAD54L	99	94.102	Oryctolagus_cuniculus
ENSSSCG00000003905	RAD54L	99	77.584	ENSORLG00000002958	rad54l	99	78.523	Oryzias_latipes
ENSSSCG00000003905	RAD54L	99	78.658	ENSORLG00020006554	rad54l	99	81.818	Oryzias_latipes_hni
ENSSSCG00000003905	RAD54L	99	78.255	ENSORLG00015002907	rad54l	99	78.658	Oryzias_latipes_hsok
ENSSSCG00000003905	RAD54L	99	78.658	ENSOMEG00000007770	rad54l	99	78.658	Oryzias_melastigma
ENSSSCG00000003905	RAD54L	99	95.722	ENSOARG00000002264	RAD54L	99	95.722	Ovis_aries
ENSSSCG00000003905	RAD54L	100	95.047	ENSPPAG00000031222	RAD54L	100	95.047	Pan_paniscus
ENSSSCG00000003905	RAD54L	99	94.236	ENSPPRG00000010317	RAD54L	99	94.236	Panthera_pardus
ENSSSCG00000003905	RAD54L	99	94.236	ENSPTIG00000012200	RAD54L	99	94.236	Panthera_tigris_altaica
ENSSSCG00000003905	RAD54L	100	95.047	ENSPTRG00000000689	RAD54L	100	95.047	Pan_troglodytes
ENSSSCG00000003905	RAD54L	100	95.181	ENSPANG00000016295	RAD54L	100	95.181	Papio_anubis
ENSSSCG00000003905	RAD54L	99	76.478	ENSPKIG00000016172	rad54l	99	76.478	Paramormyrops_kingsleyae
ENSSSCG00000003905	RAD54L	99	86.450	ENSPSIG00000003258	RAD54L	99	86.450	Pelodiscus_sinensis
ENSSSCG00000003905	RAD54L	99	75.201	ENSPMGG00000016335	rad54l	99	75.201	Periophthalmus_magnuspinnatus
ENSSSCG00000003905	RAD54L	99	93.566	ENSPEMG00000011422	Rad54l	99	93.566	Peromyscus_maniculatus_bairdii
ENSSSCG00000003905	RAD54L	99	70.761	ENSPMAG00000007719	rad54l	99	70.761	Petromyzon_marinus
ENSSSCG00000003905	RAD54L	99	87.131	ENSPCIG00000029032	RAD54L	99	87.131	Phascolarctos_cinereus
ENSSSCG00000003905	RAD54L	85	81.890	ENSPFOG00000013732	rad54l	99	81.890	Poecilia_formosa
ENSSSCG00000003905	RAD54L	81	80.519	ENSPLAG00000023416	rad54l	99	80.519	Poecilia_latipinna
ENSSSCG00000003905	RAD54L	91	79.499	ENSPMEG00000008299	rad54l	100	79.499	Poecilia_mexicana
ENSSSCG00000003905	RAD54L	99	77.212	ENSPREG00000019955	rad54l	99	77.212	Poecilia_reticulata
ENSSSCG00000003905	RAD54L	93	89.894	ENSPPYG00000001398	RAD54L	99	89.894	Pongo_abelii
ENSSSCG00000003905	RAD54L	82	93.204	ENSPCAG00000005323	RAD54L	80	93.204	Procavia_capensis
ENSSSCG00000003905	RAD54L	99	94.906	ENSPCOG00000015423	RAD54L	99	94.906	Propithecus_coquereli
ENSSSCG00000003905	RAD54L	99	73.475	ENSPNYG00000002942	rad54l	99	73.475	Pundamilia_nyererei
ENSSSCG00000003905	RAD54L	99	80.027	ENSPNAG00000012483	rad54l	99	80.027	Pygocentrus_nattereri
ENSSSCG00000003905	RAD54L	99	93.298	ENSRNOG00000013148	Rad54l	99	93.298	Rattus_norvegicus
ENSSSCG00000003905	RAD54L	100	94.913	ENSRBIG00000043495	RAD54L	100	94.913	Rhinopithecus_bieti
ENSSSCG00000003905	RAD54L	100	95.047	ENSRROG00000020844	RAD54L	100	95.047	Rhinopithecus_roxellana
ENSSSCG00000003905	RAD54L	80	48.527	YGL163C	RAD54	71	48.837	Saccharomyces_cerevisiae
ENSSSCG00000003905	RAD54L	100	95.315	ENSSBOG00000024672	RAD54L	100	95.315	Saimiri_boliviensis_boliviensis
ENSSSCG00000003905	RAD54L	99	86.933	ENSSHAG00000000110	RAD54L	99	86.933	Sarcophilus_harrisii
ENSSSCG00000003905	RAD54L	99	80.027	ENSSDUG00000019147	rad54l	99	80.027	Seriola_dumerili
ENSSSCG00000003905	RAD54L	99	79.893	ENSSLDG00000012330	rad54l	99	79.893	Seriola_lalandi_dorsalis
ENSSSCG00000003905	RAD54L	83	88.925	ENSSARG00000006689	RAD54L	100	88.925	Sorex_araneus
ENSSSCG00000003905	RAD54L	99	79.732	ENSSPAG00000011016	rad54l	99	79.732	Stegastes_partitus
ENSSSCG00000003905	RAD54L	99	83.936	ENSTGUG00000008233	RAD54L	99	83.888	Taeniopygia_guttata
ENSSSCG00000003905	RAD54L	99	75.201	ENSTRUG00000008410	rad54l	99	75.201	Takifugu_rubripes
ENSSSCG00000003905	RAD54L	99	75.168	ENSTNIG00000004716	rad54l	99	75.737	Tetraodon_nigroviridis
ENSSSCG00000003905	RAD54L	99	87.399	ENSTTRG00000006315	RAD54L	99	87.399	Tursiops_truncatus
ENSSSCG00000003905	RAD54L	99	95.412	ENSUAMG00000011824	RAD54L	99	95.412	Ursus_americanus
ENSSSCG00000003905	RAD54L	99	94.062	ENSUMAG00000023603	RAD54L	99	94.062	Ursus_maritimus
ENSSSCG00000003905	RAD54L	99	95.040	ENSVVUG00000007201	RAD54L	99	95.040	Vulpes_vulpes
ENSSSCG00000003905	RAD54L	96	77.608	ENSXETG00000004369	rad54l	99	77.608	Xenopus_tropicalis
ENSSSCG00000003905	RAD54L	55	75.485	ENSXCOG00000016028	rad54l	82	77.836	Xiphophorus_couchianus