EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSSCG00000004046 (Gene tree)
Gene ID: 100152694
Gene Symbol: PNLDC1
Alias: FLJ40240|dJ195P10.2
Full Name: PARN like%2C ribonuclease domain containing 1
Gene Type: protein_coding
Species: Sus_scrofa
Status: putative
Strand: Minus strand
Length: 18272 bases
Position: chr1:7560416-7578687
Accession: 100152694
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSSCP00000004372	CAF1	PF04857.20	9.6e-71	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSSCT00000004474	PNLDC1-201	1539	XM_001926341	ENSSSCP00000004372	512 (aa)	XP_001926376	F1SB65

Gene Model

Click here to download ENSSSCG00000004046's gene model file

Pathways

Pathway ID	Pathway Name	Source
ssc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSSCG00000004046's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSSCG00000004046	PNLDC1	99	86.444	ENSG00000146453	PNLDC1	98	86.444	Homo_sapiens
ENSSSCG00000004046	PNLDC1	99	88.802	ENSAMEG00000015371	PNLDC1	96	88.802	Ailuropoda_melanoleuca
ENSSSCG00000004046	PNLDC1	98	58.008	ENSAPLG00000007014	PNLDC1	97	58.008	Anas_platyrhynchos
ENSSSCG00000004046	PNLDC1	98	59.127	ENSACAG00000013667	PNLDC1	95	59.127	Anolis_carolinensis
ENSSSCG00000004046	PNLDC1	99	85.010	ENSANAG00000034713	PNLDC1	95	85.832	Aotus_nancymaae
ENSSSCG00000004046	PNLDC1	98	90.675	ENSBTAG00000015166	PNLDC1	96	90.551	Bos_taurus
ENSSSCG00000004046	PNLDC1	99	84.418	ENSCJAG00000011865	PNLDC1	99	84.554	Callithrix_jacchus
ENSSSCG00000004046	PNLDC1	99	90.588	ENSCAFG00000000740	PNLDC1	96	90.588	Canis_familiaris
ENSSSCG00000004046	PNLDC1	99	90.766	ENSCAFG00020017742	PNLDC1	96	90.766	Canis_lupus_dingo
ENSSSCG00000004046	PNLDC1	99	89.391	ENSCHIG00000003141	PNLDC1	96	89.391	Capra_hircus
ENSSSCG00000004046	PNLDC1	99	83.922	ENSTSYG00000005606	PNLDC1	96	83.922	Carlito_syrichta
ENSSSCG00000004046	PNLDC1	90	66.307	ENSCAPG00000011893	PNLDC1	89	66.307	Cavia_aperea
ENSSSCG00000004046	PNLDC1	100	79.183	ENSCPOG00000019565	PNLDC1	97	79.183	Cavia_porcellus
ENSSSCG00000004046	PNLDC1	99	85.207	ENSCCAG00000026232	PNLDC1	95	85.207	Cebus_capucinus
ENSSSCG00000004046	PNLDC1	99	84.314	ENSCATG00000033196	PNLDC1	96	84.314	Cercocebus_atys
ENSSSCG00000004046	PNLDC1	99	83.432	ENSCLAG00000003228	PNLDC1	95	83.432	Chinchilla_lanigera
ENSSSCG00000004046	PNLDC1	100	85.243	ENSCSAG00000012478	PNLDC1	99	85.243	Chlorocebus_sabaeus
ENSSSCG00000004046	PNLDC1	95	65.102	ENSCPBG00000004050	PNLDC1	95	65.369	Chrysemys_picta_bellii
ENSSSCG00000004046	PNLDC1	100	84.600	ENSCANG00000043076	PNLDC1	99	84.600	Colobus_angolensis_palliatus
ENSSSCG00000004046	PNLDC1	99	80.392	ENSCGRG00001007470	-	96	80.392	Cricetulus_griseus_chok1gshd
ENSSSCG00000004046	PNLDC1	99	63.086	ENSCGRG00001011981	-	95	63.086	Cricetulus_griseus_chok1gshd
ENSSSCG00000004046	PNLDC1	99	80.392	ENSCGRG00000010221	-	96	80.392	Cricetulus_griseus_crigri
ENSSSCG00000004046	PNLDC1	99	65.430	ENSCGRG00000003103	-	95	65.430	Cricetulus_griseus_crigri
ENSSSCG00000004046	PNLDC1	99	85.714	ENSDNOG00000013709	PNLDC1	96	85.714	Dasypus_novemcinctus
ENSSSCG00000004046	PNLDC1	99	78.752	ENSDORG00000011517	Pnldc1	93	87.329	Dipodomys_ordii
ENSSSCG00000004046	PNLDC1	95	76.892	ENSETEG00000007587	PNLDC1	99	76.892	Echinops_telfairi
ENSSSCG00000004046	PNLDC1	99	81.766	ENSEASG00005019029	PNLDC1	96	81.766	Equus_asinus_asinus
ENSSSCG00000004046	PNLDC1	99	89.412	ENSECAG00000012898	PNLDC1	96	89.412	Equus_caballus
ENSSSCG00000004046	PNLDC1	70	84.375	ENSEEUG00000005717	-	86	84.375	Erinaceus_europaeus
ENSSSCG00000004046	PNLDC1	99	89.020	ENSFCAG00000002848	PNLDC1	96	89.020	Felis_catus
ENSSSCG00000004046	PNLDC1	98	57.115	ENSFALG00000012081	PNLDC1	99	57.115	Ficedula_albicollis
ENSSSCG00000004046	PNLDC1	99	83.333	ENSFDAG00000021334	PNLDC1	96	83.333	Fukomys_damarensis
ENSSSCG00000004046	PNLDC1	78	58.000	ENSGALG00000011624	PNLDC1	78	58.000	Gallus_gallus
ENSSSCG00000004046	PNLDC1	98	65.675	ENSGAGG00000015276	PNLDC1	100	65.979	Gopherus_agassizii
ENSSSCG00000004046	PNLDC1	99	85.686	ENSGGOG00000014077	PNLDC1	96	85.686	Gorilla_gorilla
ENSSSCG00000004046	PNLDC1	99	84.314	ENSHGLG00000006889	PNLDC1	96	84.314	Heterocephalus_glaber_female
ENSSSCG00000004046	PNLDC1	99	84.314	ENSHGLG00100018275	PNLDC1	96	84.314	Heterocephalus_glaber_male
ENSSSCG00000004046	PNLDC1	99	87.230	ENSSTOG00000005595	PNLDC1	96	87.230	Ictidomys_tridecemlineatus
ENSSSCG00000004046	PNLDC1	99	77.120	ENSJJAG00000009937	Pnldc1	96	77.120	Jaculus_jaculus
ENSSSCG00000004046	PNLDC1	57	88.095	ENSLAFG00000030189	PNLDC1	86	88.095	Loxodonta_africana
ENSSSCG00000004046	PNLDC1	99	85.294	ENSMFAG00000041296	PNLDC1	96	85.294	Macaca_fascicularis
ENSSSCG00000004046	PNLDC1	100	84.453	ENSMMUG00000004181	PNLDC1	99	84.453	Macaca_mulatta
ENSSSCG00000004046	PNLDC1	99	85.294	ENSMNEG00000034271	PNLDC1	96	85.294	Macaca_nemestrina
ENSSSCG00000004046	PNLDC1	99	81.729	ENSMLEG00000044059	PNLDC1	96	81.729	Mandrillus_leucophaeus
ENSSSCG00000004046	PNLDC1	99	57.534	ENSMGAG00000012470	PNLDC1	97	57.534	Meleagris_gallopavo
ENSSSCG00000004046	PNLDC1	99	64.062	ENSMAUG00000012298	Pnldc1	96	64.062	Mesocricetus_auratus
ENSSSCG00000004046	PNLDC1	99	84.706	ENSMICG00000008021	PNLDC1	96	84.706	Microcebus_murinus
ENSSSCG00000004046	PNLDC1	99	83.594	ENSMOCG00000014287	Pnldc1	96	83.594	Microtus_ochrogaster
ENSSSCG00000004046	PNLDC1	98	75.896	ENSMODG00000007420	PNLDC1	94	75.896	Monodelphis_domestica
ENSSSCG00000004046	PNLDC1	99	84.314	MGP_CAROLIEiJ_G0021045	Pnldc1	96	84.314	Mus_caroli
ENSSSCG00000004046	PNLDC1	99	84.314	ENSMUSG00000073460	Pnldc1	93	88.776	Mus_musculus
ENSSSCG00000004046	PNLDC1	99	84.706	MGP_PahariEiJ_G0023361	Pnldc1	96	84.706	Mus_pahari
ENSSSCG00000004046	PNLDC1	99	83.922	MGP_SPRETEiJ_G0021975	Pnldc1	96	83.922	Mus_spretus
ENSSSCG00000004046	PNLDC1	99	89.764	ENSMPUG00000004920	PNLDC1	96	89.764	Mustela_putorius_furo
ENSSSCG00000004046	PNLDC1	99	87.747	ENSMLUG00000000747	PNLDC1	95	87.747	Myotis_lucifugus
ENSSSCG00000004046	PNLDC1	99	84.118	ENSNGAG00000017714	Pnldc1	96	84.118	Nannospalax_galili
ENSSSCG00000004046	PNLDC1	100	85.185	ENSNLEG00000011282	PNLDC1	99	85.185	Nomascus_leucogenys
ENSSSCG00000004046	PNLDC1	56	68.056	ENSMEUG00000014042	-	100	68.056	Notamacropus_eugenii
ENSSSCG00000004046	PNLDC1	62	65.204	ENSMEUG00000011926	-	64	65.204	Notamacropus_eugenii
ENSSSCG00000004046	PNLDC1	73	79.733	ENSOPRG00000003813	PNLDC1	71	79.733	Ochotona_princeps
ENSSSCG00000004046	PNLDC1	99	82.549	ENSODEG00000008047	PNLDC1	96	82.549	Octodon_degus
ENSSSCG00000004046	PNLDC1	98	56.890	ENSOANG00000012199	PNLDC1	95	57.594	Ornithorhynchus_anatinus
ENSSSCG00000004046	PNLDC1	99	84.510	ENSOCUG00000013867	PNLDC1	96	84.510	Oryctolagus_cuniculus
ENSSSCG00000004046	PNLDC1	99	85.799	ENSOGAG00000007331	PNLDC1	96	85.799	Otolemur_garnettii
ENSSSCG00000004046	PNLDC1	99	89.194	ENSOARG00000004585	PNLDC1	96	89.194	Ovis_aries
ENSSSCG00000004046	PNLDC1	99	85.686	ENSPPAG00000026651	PNLDC1	96	85.686	Pan_paniscus
ENSSSCG00000004046	PNLDC1	99	88.627	ENSPPRG00000012854	PNLDC1	96	88.627	Panthera_pardus
ENSSSCG00000004046	PNLDC1	98	89.087	ENSPTIG00000011501	PNLDC1	95	89.087	Panthera_tigris_altaica
ENSSSCG00000004046	PNLDC1	99	85.938	ENSPTRG00000018762	PNLDC1	98	85.938	Pan_troglodytes
ENSSSCG00000004046	PNLDC1	99	85.294	ENSPANG00000022009	PNLDC1	96	85.294	Papio_anubis
ENSSSCG00000004046	PNLDC1	50	66.409	ENSPSIG00000011419	PNLDC1	86	66.409	Pelodiscus_sinensis
ENSSSCG00000004046	PNLDC1	99	84.314	ENSPEMG00000016301	Pnldc1	96	84.314	Peromyscus_maniculatus_bairdii
ENSSSCG00000004046	PNLDC1	86	76.712	ENSPCIG00000023412	PNLDC1	100	76.712	Phascolarctos_cinereus
ENSSSCG00000004046	PNLDC1	99	79.452	ENSPPYG00000017148	PNLDC1	96	79.452	Pongo_abelii
ENSSSCG00000004046	PNLDC1	99	76.378	ENSPCAG00000014169	PNLDC1	96	76.378	Procavia_capensis
ENSSSCG00000004046	PNLDC1	99	84.510	ENSPCOG00000025722	PNLDC1	96	84.510	Propithecus_coquereli
ENSSSCG00000004046	PNLDC1	68	94.571	ENSPVAG00000005325	PNLDC1	66	94.571	Pteropus_vampyrus
ENSSSCG00000004046	PNLDC1	99	83.694	ENSRNOG00000023140	Pnldc1	99	86.164	Rattus_norvegicus
ENSSSCG00000004046	PNLDC1	99	85.098	ENSRBIG00000033806	PNLDC1	96	85.098	Rhinopithecus_bieti
ENSSSCG00000004046	PNLDC1	100	84.990	ENSRROG00000043919	PNLDC1	99	84.990	Rhinopithecus_roxellana
ENSSSCG00000004046	PNLDC1	99	85.207	ENSSBOG00000019135	PNLDC1	95	85.207	Saimiri_boliviensis_boliviensis
ENSSSCG00000004046	PNLDC1	99	75.787	ENSSHAG00000015192	PNLDC1	97	75.787	Sarcophilus_harrisii
ENSSSCG00000004046	PNLDC1	56	68.182	ENSSPUG00000004627	PNLDC1	99	67.857	Sphenodon_punctatus
ENSSSCG00000004046	PNLDC1	95	58.197	ENSTGUG00000011418	PNLDC1	99	58.197	Taeniopygia_guttata
ENSSSCG00000004046	PNLDC1	100	76.023	ENSTBEG00000009131	PNLDC1	99	76.023	Tupaia_belangeri
ENSSSCG00000004046	PNLDC1	68	85.714	ENSTTRG00000010409	PNLDC1	66	85.714	Tursiops_truncatus
ENSSSCG00000004046	PNLDC1	99	77.220	ENSUAMG00000015783	PNLDC1	96	77.220	Ursus_americanus
ENSSSCG00000004046	PNLDC1	98	84.086	ENSUMAG00000011903	PNLDC1	99	84.086	Ursus_maritimus
ENSSSCG00000004046	PNLDC1	96	91.224	ENSVVUG00000006586	PNLDC1	99	90.965	Vulpes_vulpes